FvH4_4g28690

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014472
Physical Location & Seq
Reverse (-)
29241911 .. 29243320
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28690.t1

Sequence Viewer

Length: 1014 bp
ATGGCAGCTTCCCTTTGTTTTGGACCCTTCAGACTCCATCTCATGCTTTTGCTTTTCGCCATCTTCAACACCATGTTACTTGCAACTGACCCTCCTTTAACGTTGGACTACTATGCATCCAAATGTCCCACCTTGTTCAAGATTGTAAAGAAAGAAATGGAGTGTGAAGTTCTCTCAGATCCTCGTAATGCCGCCCTGATAGTCCGGTTACACTTCCATGACTGTTTTGTTCAGGGATGTGATGGTTCAGTTCTGCTAGACGATACGATCTCACTAAAAGGAGAGAAGAAGGCTTCCACCAACATAAACTCGTTGAAAGGTTTCAGGATTATTGACAGGATAAAGAACAAGCTTGAATCAGAGTGTCCCGGAATTGTCTCTTGCGCCGATATCCTCACTATTGCAGCAAGAGATGCTGTGATTCTGGTTGGCGGACCTTATTGGGATGTTCCTCTGGGAAGAAAGGACTCTATAACTGCTAGTCCTGAACTTGCAGAAACCAACCTTCCTACTGCAGATGAAGGCCTTCTGTCTATCATCTCCAAGTTCCAGTACCAAGGCCTTTCAGTCACAGACGTGGTAGCTCTTTCAGGAGCTCACACAATTGGCATGGCACGGTGCGCGAATGTTCGATCAAGGATCTATGGTGACTATGAATCAACTTCAGGAATCGACCCTCTTTCAGAGTCATACCTCAGCAGCTTGAAGTTAACTTGCCCTATAGGTGGAGATGAAAATAACATAACAGCAATGGACTATGTCACTCCTGAACTATTTGACAATTCTTTCTATCATATACTATTGAAAGGGCAGGGACTACTCAACTCGGACCAGGAACTGTATTCTAGCTTGTTGGGGATCGAAACCAAGAAACTTGTTCATAAATATGCAGAAGACGCCGTCGCTTTCTTCCAGCAATTCTCATATTCAATGGTGAAACTGGGGAACATTACTAACGAGGACAGCTTCACCACCGGAGAGGTTAGGAAAAATTGCAGATTTGTGAACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

338

Amino Acids

37.1

Weight (kDa)

5.23

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 49 - 299 8.3e-77 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68850
fragaria_vesca FvH4_4g28690
malus_domestica MD13G1053000.v1.1 MD16G1052000.v1.1
prunus_persica Prupe.1G299000_v2.0.a1
pyrus_communis pycom13g04750 pycom16g04570
rosa_chinensis RchiOBHm_Chr4g0436811
rosa_laevigata RLG00000006495
rosa_multiflora Rmu_sc0001837.1_g000013
rosa_roxburghii Rroxscaffold_5G00377870
rosa_rugosa Rorug04G0296400
rosa_samantha Rh4AG350700 Rh4BG359700 Rh4CG374000 Rh4DG353600
rosa_wichuraiana Rw4G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 623
AciI CCGC 2 cut(s) 192, 432
AclI AACGTT 1 cut(s) 101
AclWI GGATC 3 cut(s) 173, 647, 866
AcuI CTGAAG 2 cut(s) 13, 648
AcyI GRCGYC 1 cut(s) 897
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 1 cut(s) 725
AgsI TTSAA 7 cut(s) 67, 139, 316, 356, 706, 805, 930
AjiI CACGTC 1 cut(s) 577
AjnI CCWGG 1 cut(s) 831
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 7 cut(s) 8, 352, 584, 596, 702, 849, 966
AluI AGCT 7 cut(s) 8, 352, 584, 596, 702, 849, 966
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 3 cut(s) 173, 647, 866
AlwNI CAGNNNCTG 1 cut(s) 838
AoxI GGCC 2 cut(s) 523, 559
ApeKI GCWGC 3 cut(s) 5, 404, 699
Asp700I GAANNNNTTC 2 cut(s) 320, 525
AspLEI GCGC 2 cut(s) 386, 623
AspS9I GGNCC 3 cut(s) 23, 434, 829
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 3 cut(s) 659, 946, 961
AvaII GGWCC 3 cut(s) 23, 434, 829
BanII GRGCYC 1 cut(s) 598
BbsI GAAGAC 1 cut(s) 900
Bbv12I GWGCWC 1 cut(s) 598
BbvCI CCTCAGC 1 cut(s) 695
BbvI GCAGC 3 cut(s) 17, 416, 711
BccI CCATC 3 cut(s) 45, 68, 236
BceAI ACGGC 1 cut(s) 884
BciT130I CCWGG 1 cut(s) 833
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 3 cut(s) 257, 480, 846
BfmI CTRYAG 2 cut(s) 513, 720
BisI GCNGC 4 cut(s) 6, 192, 405, 700
BlsI GCNGC 4 cut(s) 7, 193, 406, 701
Bme1390I CCNGG 2 cut(s) 369, 833
Bme18I GGWCC 3 cut(s) 23, 434, 829
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 3 cut(s) 23, 434, 829
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 2 cut(s) 369, 833
BmrI ACTGGG 1 cut(s) 950
BmsI GCATC 2 cut(s) 125, 403
BmuI ACTGGG 1 cut(s) 950
BpiI GAAGAC 1 cut(s) 900
Bpu10I CCTNAGC 1 cut(s) 695
BpuMI CCSGG 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 897
BsaJI CCNNGG 1 cut(s) 556
BsaWI WCCGGW 2 cut(s) 204, 974
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 725
Bse1I ACTGG 2 cut(s) 550, 945
Bse3DI GCAATG 1 cut(s) 756
BseBI CCWGG 1 cut(s) 833
BseDI CCNNGG 1 cut(s) 556
BseGI GGATG 3 cut(s) 116, 242, 451
BseLI CCNNNNNNNGG 1 cut(s) 725
BseMI GCAATG 1 cut(s) 756
BseMII CTCAG 2 cut(s) 189, 709
BseNI ACTGG 2 cut(s) 550, 945
BseXI GCAGC 3 cut(s) 17, 416, 711
Bsh1236I CGCG 1 cut(s) 623
BshFI GGCC 2 cut(s) 525, 561
BsiHKAI GWGCWC 1 cut(s) 598
BsiSI CCGG 3 cut(s) 205, 369, 975
BslFI GGGAC 3 cut(s) 111, 351, 828
BslI CCNNNNNNNGG 1 cut(s) 725
BsmAI GTCTC 1 cut(s) 382
BsmFI GGGAC 3 cut(s) 111, 351, 828
BsnI GGCC 2 cut(s) 525, 561
Bsp1286I GDGCHC 1 cut(s) 598
Bsp143I GATC 5 cut(s) 178, 267, 632, 639, 858
BspACI CCGC 2 cut(s) 192, 432
BspANI GGCC 2 cut(s) 525, 561
BspCNI CTCAG 2 cut(s) 188, 708
BspFNI CGCG 1 cut(s) 623
BspLI GGNNCC 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 517
BspPI GGATC 3 cut(s) 173, 647, 866
BsrDI GCAATG 1 cut(s) 756
BsrI ACTGG 2 cut(s) 550, 945
BssECI CCNNGG 1 cut(s) 556
BssMI GATC 5 cut(s) 178, 267, 632, 639, 858
BssNI GRCGYC 1 cut(s) 897
BssT1I CCWWGG 1 cut(s) 556
Bst2UI CCWGG 1 cut(s) 833
Bst4CI ACNGT 3 cut(s) 224, 618, 840
BstACI GRCGYC 1 cut(s) 897
BstAPI GCANNNNNTGC 1 cut(s) 413
BstDEI CTNAG 2 cut(s) 175, 695
BstF5I GGATG 3 cut(s) 116, 242, 451
BstFNI CGCG 1 cut(s) 623
BstHHI GCGC 2 cut(s) 386, 623
BstKTI GATC 5 cut(s) 181, 270, 635, 642, 861
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 5 cut(s) 178, 267, 632, 639, 858
BstMWI GCNNNNNNNGC 3 cut(s) 413, 620, 896
BstNI CCWGG 1 cut(s) 833
BstSCI CCNGG 2 cut(s) 367, 831
BstSFI CTRYAG 2 cut(s) 513, 720
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 3 cut(s) 17, 416, 711
BstV2I GAAGAC 1 cut(s) 900
BstX2I RGATCY 2 cut(s) 178, 639
BstYI RGATCY 2 cut(s) 178, 639
BsuRI GGCC 2 cut(s) 525, 561
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 3 cut(s) 116, 242, 451
CaiI CAGNNNCTG 1 cut(s) 838
CfoI GCGC 2 cut(s) 386, 623
Cfr13I GGNCC 3 cut(s) 23, 434, 829
CseI GACGC 1 cut(s) 905
Csp6I GTAC 1 cut(s) 553
CviAII CATG 5 cut(s) 43, 73, 218, 610, 1011
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 2 cut(s) 175, 695
DpnI GATC 5 cut(s) 180, 269, 634, 641, 860
DpnII GATC 5 cut(s) 178, 267, 632, 639, 858
EciI GGCGGA 1 cut(s) 447
Ecl136II GAGCTC 1 cut(s) 596
Eco130I CCWWGG 1 cut(s) 556
Eco147I AGGCCT 2 cut(s) 525, 561
Eco24I GRGCYC 1 cut(s) 598
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 3 cut(s) 23, 434, 829
Eco53kI GAGCTC 1 cut(s) 596
Eco57I CTGAAG 2 cut(s) 13, 648
EcoICRI GAGCTC 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 831
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 556
EcoT22I ATGCAT 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 5 cut(s) 46, 76, 221, 613, 1014
FaqI GGGAC 3 cut(s) 111, 351, 828
FatI CATG 5 cut(s) 42, 72, 217, 609, 1010
Fnu4HI GCNGC 4 cut(s) 6, 192, 405, 700
FokI GGATG 3 cut(s) 103, 249, 458
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 4 cut(s) 6, 192, 405, 700
FspBI CTAG 3 cut(s) 257, 480, 846
GlaI GCGC 2 cut(s) 385, 622
GluI GCNGC 4 cut(s) 6, 192, 405, 700
HaeIII GGCC 2 cut(s) 525, 561
HapII CCGG 3 cut(s) 205, 369, 975
HgaI GACGC 1 cut(s) 905
HhaI GCGC 2 cut(s) 386, 623
Hin1I GRCGYC 1 cut(s) 897
Hin1II CATG 5 cut(s) 46, 76, 221, 613, 1014
Hin6I GCGC 2 cut(s) 384, 621
HinP1I GCGC 2 cut(s) 384, 621
HincII GTYRAC 1 cut(s) 711
HindII GTYRAC 1 cut(s) 711
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 7 cut(s) 33, 356, 421, 467, 656, 669, 686
HpaI GTTAAC 1 cut(s) 711
HpaII CCGG 3 cut(s) 205, 369, 975
HphI GGTGA 3 cut(s) 659, 946, 961
Hpy166II GTNNAC 2 cut(s) 711, 1006
Hpy188I TCNGA 5 cut(s) 32, 178, 361, 685, 829
Hpy188III TCNNGA 6 cut(s) 139, 325, 485, 591, 666, 767
Hpy8I GTNNAC 2 cut(s) 711, 1006
Hpy99I CGWCG 1 cut(s) 905
HpyAV CCTTC 5 cut(s) 37, 283, 515, 515, 536
HpyCH4III ACNGT 3 cut(s) 224, 618, 840
HpyCH4IV ACGT 2 cut(s) 101, 576
HpyCH4V TGCA 7 cut(s) 83, 116, 404, 494, 515, 890, 996
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 620, 896
HpyF3I CTNAG 2 cut(s) 175, 695
HpySE526I ACGT 2 cut(s) 101, 576
Hsp92I GRCGYC 1 cut(s) 897
Hsp92II CATG 5 cut(s) 46, 76, 221, 613, 1014
HspAI GCGC 2 cut(s) 384, 621
KspAI GTTAAC 1 cut(s) 711
Kzo9I GATC 5 cut(s) 178, 267, 632, 639, 858
LmnI GCTCC 1 cut(s) 593
Lsp1109I GCAGC 3 cut(s) 17, 416, 711
LweI GCATC 2 cut(s) 125, 403
MaeI CTAG 3 cut(s) 257, 480, 846
MaeII ACGT 2 cut(s) 101, 576
MaeIII GTNAC 5 cut(s) 75, 207, 568, 647, 760
MalI GATC 5 cut(s) 180, 269, 634, 641, 860
MboI GATC 5 cut(s) 178, 267, 632, 639, 858
MboII GAAGA 5 cut(s) 55, 298, 471, 901, 905
MfeI CAATTG 1 cut(s) 603
MflI RGATCY 2 cut(s) 178, 639
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 5 cut(s) 372, 603, 781, 917, 991
MlyI GAGTC 3 cut(s) 27, 461, 695
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 8 cut(s) 102, 192, 404, 462, 687, 704, 952, 973
Mph1103I ATGCAT 1 cut(s) 118
MroXI GAANNNNTTC 2 cut(s) 320, 525
MseI TTAA 2 cut(s) 98, 710
MslI CAYNNNNRTG 4 cut(s) 121, 216, 575, 885
MspI CCGG 3 cut(s) 205, 369, 975
MspR9I CCNGG 2 cut(s) 369, 833
MunI CAATTG 1 cut(s) 603
MvaI CCWGG 1 cut(s) 833
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 3 cut(s) 413, 620, 896
NciI CCSGG 1 cut(s) 369
NdeII GATC 5 cut(s) 178, 267, 632, 639, 858
NlaIII CATG 5 cut(s) 46, 76, 221, 613, 1014
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 3 cut(s) 568, 647, 760
NsiI ATGCAT 1 cut(s) 118
OliI CACNNNNGTG 1 cut(s) 575
PceI AGGCCT 2 cut(s) 525, 561
PdmI GAANNNNTTC 2 cut(s) 320, 525
PfeI GAWTC 4 cut(s) 356, 421, 656, 669
PflFI GACNNNGTC 2 cut(s) 758, 899
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 4 cut(s) 7, 193, 406, 701
PleI GAGTC 3 cut(s) 27, 461, 694
PpsI GAGTC 3 cut(s) 27, 461, 694
Psp124BI GAGCTC 1 cut(s) 598
Psp1406I AACGTT 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 831
PspGI CCWGG 1 cut(s) 831
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 3 cut(s) 23, 434, 829
PstI CTGCAG 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 838
PsuI RGATCY 2 cut(s) 178, 639
PsyI GACNNNGTC 2 cut(s) 758, 899
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
RseI CAYNNNNRTG 4 cut(s) 121, 216, 575, 885
SacI GAGCTC 1 cut(s) 598
SaqAI TTAA 2 cut(s) 98, 710
SatI GCNGC 4 cut(s) 6, 192, 405, 700
Sau3AI GATC 5 cut(s) 178, 267, 632, 639, 858
Sau96I GGNCC 3 cut(s) 23, 434, 829
SchI GAGTC 3 cut(s) 27, 461, 695
ScrFI CCNGG 2 cut(s) 369, 833
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 2 cut(s) 125, 403
SfcI CTRYAG 2 cut(s) 513, 720
SinI GGWCC 3 cut(s) 23, 434, 829
SmiMI CAYNNNNRTG 4 cut(s) 121, 216, 575, 885
Sse9I AATT 5 cut(s) 372, 603, 781, 917, 991
SseBI AGGCCT 2 cut(s) 525, 561
SsiI CCGC 2 cut(s) 192, 432
SspMI CTAG 3 cut(s) 257, 480, 846
SstI GAGCTC 1 cut(s) 598
StuI AGGCCT 2 cut(s) 525, 561
StyD4I CCNGG 2 cut(s) 367, 831
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 3 cut(s) 224, 618, 840
TaiI ACGT 2 cut(s) 104, 579
TaqI TCGA 3 cut(s) 631, 672, 861
TasI AATT 5 cut(s) 372, 603, 781, 917, 991
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 4 cut(s) 356, 421, 656, 669
Tru1I TTAA 2 cut(s) 98, 710
Tru9I TTAA 2 cut(s) 98, 710
TseFI GTSAC 3 cut(s) 568, 647, 760
TseI GCWGC 3 cut(s) 5, 404, 699
Tsp45I GTSAC 3 cut(s) 568, 647, 760
TspDTI ATGAA 4 cut(s) 534, 669, 747, 869
Tth111I GACNNNGTC 2 cut(s) 758, 899
VpaK11BI GGWCC 3 cut(s) 23, 434, 829
XmnI GAANNNNTTC 2 cut(s) 320, 525
XspI CTAG 3 cut(s) 257, 480, 846
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.