RchiOBHm_Chr4g0436811

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014472
Physical Location & Seq
Reverse (-)
60035862 .. 60037284
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40512

Sequence Viewer

Length: 1011 bp
ATGGCACCTTCCCTTTGTTTTGGTCCCTTCAGACTCCATTTCATGCTTTTAGTTTTCGCCATCTTGAACACCGGTTTACTTGCAAGTGACCCTCCTTTAACATTGGACTACTATGCATCTAATTGTCCCACTTTGTTTGATATTGTAAAGAAAGAAATGGAGTGTGAAGTTCTCTCAGATCCTCGTAATGCTGCCTTGATAGTCCGGTTACACTTCCATGACTGTTTTGTTCAGGGATGTGATGGTTCAGTTTTGCTAGACGATACGATTTCACTAAAAGGAGAGAAGAAGGCTTCCACCAACATAAACTCTTTGAAAGGTTTCAGGATTATTGACAGGATAAAGAACAAGCTTGAATCAGAGTGTCCCGGAATTGTCTCTTGTGCCGATATTCTCACTATTGCAGCAAGAGATGCTGTGATTCTGGTTGGTGGACCTTATTGGGATGTTCCTCTGGGAAGAAAGGACTCTATAACTGCTAGTCCTGAACTTGCAGAAACCAACCTTCCTACTCCAGAAGAAGGCCTTACGTCTATCATTTCCAAATTTCTTTACCAAGGCCTTTCGGTCACAGATGTGGTAGCTCTTTCAGCTCACACAATCGGTATGGCACGGTGTCAGAATGTTCGAGCAAGGATCTATGGTGACTATGAATCAACCTCAGGAATCGACCCTCTTTCAGGGTCATACCTCAGCAGCTTGAGGTCAACTTGCCCCATAGGTGGAGATGAAAATAACATTACAGCCATGGACTATGTCACTCCTGAACTATTTGACAATTCTTTCTATCATTTACTATTGAAAGGGCAGGGACTACTCAACTCAGACCAGGAAATGTATTCTAGCTTGTTGGGTATCGAAACCAAGAAACTTGTTCACAAGTATGCAGAAGACGCGATTGCTTTCTTCCAGCAATTCTCAGATTCAATGGTGAAAATGGGGAATATAACTAACGAGGACAGCTTTACCACCGGAGAGGTCAGGAAGAATTGCAGATTTGTGAACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

336

Amino Acids

36.93

Weight (kDa)

4.98

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 49 - 298 2.3e-74 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68850
fragaria_vesca FvH4_4g28690
malus_domestica MD13G1053000.v1.1 MD16G1052000.v1.1
prunus_persica Prupe.1G299000_v2.0.a1
pyrus_communis pycom13g04750 pycom16g04570
rosa_chinensis RchiOBHm_Chr4g0436811
rosa_laevigata RLG00000006495
rosa_multiflora Rmu_sc0001837.1_g000013
rosa_roxburghii Rroxscaffold_5G00377870
rosa_rugosa Rorug04G0296400
rosa_samantha Rh4AG350700 Rh4BG359700 Rh4CG374000 Rh4DG353600
rosa_wichuraiana Rw4G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 896
AclWI GGATC 2 cut(s) 173, 644
AcsI RAATTY 1 cut(s) 545
AcuI CTGAAG 1 cut(s) 13
AfiI CCNNNNNNNGG 3 cut(s) 521, 680, 722
AgeI ACCGGT 1 cut(s) 71
AgsI TTSAA 5 cut(s) 67, 316, 356, 802, 927
AjnI CCWGG 1 cut(s) 828
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 6 cut(s) 352, 584, 593, 699, 846, 963
AluI AGCT 6 cut(s) 352, 584, 593, 699, 846, 963
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 2 cut(s) 173, 644
AoxI GGCC 2 cut(s) 523, 559
ApeKI GCWGC 3 cut(s) 191, 404, 696
ApoI RAATTY 1 cut(s) 545
AsiGI ACCGGT 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 23, 434
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 656, 943
AvaII GGWCC 2 cut(s) 23, 434
AxyI CCTNAGG 1 cut(s) 661
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 897
BbvCI CCTCAGC 1 cut(s) 692
BbvI GCAGC 3 cut(s) 178, 416, 708
BccI CCATC 2 cut(s) 68, 236
BciT130I CCWGG 1 cut(s) 830
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 3 cut(s) 257, 480, 843
BisI GCNGC 3 cut(s) 192, 405, 697
BlsI GCNGC 3 cut(s) 193, 406, 698
Bme1390I CCNGG 2 cut(s) 369, 830
Bme18I GGWCC 2 cut(s) 23, 434
BmgT120I GGNCC 2 cut(s) 23, 434
BmiI GGNNCC 2 cut(s) 6, 25
BmrFI CCNGG 2 cut(s) 369, 830
BmsI GCATC 2 cut(s) 125, 403
BpiI GAAGAC 1 cut(s) 897
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 692
BpuEI CTTGAG 1 cut(s) 721
BpuMI CCSGG 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 556, 747
BsaWI WCCGGW 3 cut(s) 71, 204, 971
Bsc4I CCNNNNNNNGG 3 cut(s) 521, 680, 722
Bse118I RCCGGY 1 cut(s) 71
Bse21I CCTNAGG 1 cut(s) 661
BseBI CCWGG 1 cut(s) 830
BseDI CCNNGG 2 cut(s) 556, 747
BseGI GGATG 2 cut(s) 242, 451
BseLI CCNNNNNNNGG 3 cut(s) 521, 680, 722
BseMII CTCAG 5 cut(s) 189, 675, 706, 837, 933
BseXI GCAGC 3 cut(s) 178, 416, 708
Bsh1236I CGCG 1 cut(s) 896
BshFI GGCC 2 cut(s) 525, 561
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 71
BsiSI CCGG 4 cut(s) 72, 205, 369, 972
BslFI GGGAC 4 cut(s) 9, 111, 351, 825
BslI CCNNNNNNNGG 3 cut(s) 521, 680, 722
BsmAI GTCTC 1 cut(s) 382
BsmFI GGGAC 4 cut(s) 9, 111, 351, 825
BsnI GGCC 2 cut(s) 525, 561
Bsp143I GATC 2 cut(s) 178, 636
Bsp19I CCATGG 1 cut(s) 747
BspANI GGCC 2 cut(s) 525, 561
BspCNI CTCAG 5 cut(s) 188, 674, 705, 836, 932
BspFNI CGCG 1 cut(s) 896
BspLI GGNNCC 2 cut(s) 6, 25
BspPI GGATC 2 cut(s) 173, 644
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 556, 747
BssMI GATC 2 cut(s) 178, 636
BssT1I CCWWGG 2 cut(s) 556, 747
Bst2UI CCWGG 1 cut(s) 830
Bst4CI ACNGT 2 cut(s) 224, 615
BstAPI GCANNNNNTGC 1 cut(s) 413
BstDEI CTNAG 5 cut(s) 175, 661, 692, 823, 919
BstDSI CCRYGG 1 cut(s) 747
BstENI CCTNNNNNAGG 1 cut(s) 678
BstF5I GGATG 2 cut(s) 242, 451
BstFNI CGCG 1 cut(s) 896
BstKTI GATC 2 cut(s) 181, 639
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 2 cut(s) 178, 636
BstMWI GCNNNNNNNGC 3 cut(s) 413, 590, 893
BstNI CCWGG 1 cut(s) 830
BstSCI CCNGG 2 cut(s) 367, 828
BstUI CGCG 1 cut(s) 896
BstV1I GCAGC 3 cut(s) 178, 416, 708
BstV2I GAAGAC 1 cut(s) 897
BstX2I RGATCY 2 cut(s) 178, 636
BstYI RGATCY 2 cut(s) 178, 636
Bsu36I CCTNAGG 1 cut(s) 661
BsuRI GGCC 2 cut(s) 525, 561
BtgI CCRYGG 1 cut(s) 747
BtsCI GGATG 2 cut(s) 242, 451
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 23, 434
CseI GACGC 1 cut(s) 902
CspAI ACCGGT 1 cut(s) 71
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 4 cut(s) 43, 218, 748, 1008
DdeI CTNAG 5 cut(s) 175, 661, 692, 823, 919
DpnI GATC 2 cut(s) 180, 638
DpnII GATC 2 cut(s) 178, 636
Eco130I CCWWGG 2 cut(s) 556, 747
Eco147I AGGCCT 2 cut(s) 525, 561
Eco47I GGWCC 2 cut(s) 23, 434
Eco57I CTGAAG 1 cut(s) 13
Eco81I CCTNAGG 1 cut(s) 661
EcoNI CCTNNNNNAGG 1 cut(s) 678
EcoRII CCWGG 1 cut(s) 828
EcoT14I CCWWGG 2 cut(s) 556, 747
EcoT22I ATGCAT 1 cut(s) 118
ErhI CCWWGG 2 cut(s) 556, 747
FaeI CATG 4 cut(s) 46, 221, 751, 1011
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FaqI GGGAC 4 cut(s) 9, 111, 351, 825
FatI CATG 4 cut(s) 42, 217, 747, 1007
Fnu4HI GCNGC 3 cut(s) 192, 405, 697
FokI GGATG 2 cut(s) 249, 458
Fsp4HI GCNGC 3 cut(s) 192, 405, 697
FspBI CTAG 3 cut(s) 257, 480, 843
GluI GCNGC 3 cut(s) 192, 405, 697
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 2 cut(s) 525, 561
HapII CCGG 4 cut(s) 72, 205, 369, 972
HgaI GACGC 1 cut(s) 902
Hin1II CATG 4 cut(s) 46, 221, 751, 1011
HincII GTYRAC 1 cut(s) 708
HindII GTYRAC 1 cut(s) 708
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 7 cut(s) 33, 356, 421, 467, 653, 666, 923
HpaII CCGG 4 cut(s) 72, 205, 369, 972
HphI GGTGA 2 cut(s) 656, 943
Hpy166II GTNNAC 5 cut(s) 77, 434, 708, 877, 1003
Hpy188I TCNGA 6 cut(s) 32, 178, 361, 621, 826, 922
Hpy188III TCNNGA 7 cut(s) 64, 325, 485, 515, 663, 764, 982
Hpy8I GTNNAC 5 cut(s) 77, 434, 708, 877, 1003
HpyAV CCTTC 5 cut(s) 18, 37, 283, 515, 515
HpyCH4III ACNGT 2 cut(s) 224, 615
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 6 cut(s) 83, 116, 404, 494, 887, 993
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 590, 893
HpyF3I CTNAG 5 cut(s) 175, 661, 692, 823, 919
HpySE526I ACGT 1 cut(s) 530
Hsp92II CATG 4 cut(s) 46, 221, 751, 1011
Kzo9I GATC 2 cut(s) 178, 636
Lsp1109I GCAGC 3 cut(s) 178, 416, 708
LweI GCATC 2 cut(s) 125, 403
MaeI CTAG 3 cut(s) 257, 480, 843
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 5 cut(s) 86, 207, 568, 644, 757
MalI GATC 2 cut(s) 180, 638
MboI GATC 2 cut(s) 178, 636
MboII GAAGA 6 cut(s) 298, 471, 530, 898, 902, 997
MflI RGATCY 2 cut(s) 178, 636
MluCI AATT 6 cut(s) 121, 372, 545, 778, 914, 988
MlyI GAGTC 2 cut(s) 27, 461
MnlI CCTC 9 cut(s) 102, 192, 462, 670, 684, 696, 701, 949, 970
Mph1103I ATGCAT 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 1 cut(s) 98
MslI CAYNNNNRTG 3 cut(s) 216, 575, 882
MspI CCGG 4 cut(s) 72, 205, 369, 972
MspR9I CCNGG 2 cut(s) 369, 830
MvaI CCWGG 1 cut(s) 830
MvnI CGCG 1 cut(s) 896
MwoI GCNNNNNNNGC 3 cut(s) 413, 590, 893
NciI CCSGG 1 cut(s) 369
NcoI CCATGG 1 cut(s) 747
NdeII GATC 2 cut(s) 178, 636
NlaIII CATG 4 cut(s) 46, 221, 751, 1011
NlaIV GGNNCC 2 cut(s) 6, 25
NmuCI GTSAC 4 cut(s) 86, 568, 644, 757
NsiI ATGCAT 1 cut(s) 118
OliI CACNNNNGTG 1 cut(s) 575
PceI AGGCCT 2 cut(s) 525, 561
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 5 cut(s) 356, 421, 653, 666, 923
PflFI GACNNNGTC 1 cut(s) 755
PfoI TCCNGGA 1 cut(s) 367
PinAI ACCGGT 1 cut(s) 71
PkrI GCNGC 3 cut(s) 193, 406, 698
PleI GAGTC 2 cut(s) 27, 461
PpsI GAGTC 2 cut(s) 27, 461
Psp6I CCWGG 1 cut(s) 828
PspGI CCWGG 1 cut(s) 828
PspN4I GGNNCC 2 cut(s) 6, 25
PspPI GGNCC 2 cut(s) 23, 434
PsuI RGATCY 2 cut(s) 178, 636
PsyI GACNNNGTC 1 cut(s) 755
RseI CAYNNNNRTG 3 cut(s) 216, 575, 882
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 3 cut(s) 192, 405, 697
Sau3AI GATC 2 cut(s) 178, 636
Sau96I GGNCC 2 cut(s) 23, 434
SchI GAGTC 2 cut(s) 27, 461
ScrFI CCNGG 2 cut(s) 369, 830
SfaNI GCATC 2 cut(s) 125, 403
SinI GGWCC 2 cut(s) 23, 434
SmiMI CAYNNNNRTG 3 cut(s) 216, 575, 882
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
Sse9I AATT 6 cut(s) 121, 372, 545, 778, 914, 988
SseBI AGGCCT 2 cut(s) 525, 561
SspMI CTAG 3 cut(s) 257, 480, 843
StuI AGGCCT 2 cut(s) 525, 561
StyD4I CCNGG 2 cut(s) 367, 828
StyI CCWWGG 2 cut(s) 556, 747
TaaI ACNGT 2 cut(s) 224, 615
TaiI ACGT 1 cut(s) 533
TaqI TCGA 3 cut(s) 628, 669, 858
TaqII GACCGA 1 cut(s) 556
TasI AATT 6 cut(s) 121, 372, 545, 778, 914, 988
TfiI GAWTC 5 cut(s) 356, 421, 653, 666, 923
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TseFI GTSAC 4 cut(s) 86, 568, 644, 757
TseI GCWGC 3 cut(s) 191, 404, 696
Tsp45I GTSAC 4 cut(s) 86, 568, 644, 757
TspDTI ATGAA 3 cut(s) 31, 666, 744
Tth111I GACNNNGTC 1 cut(s) 755
VpaK11BI GGWCC 2 cut(s) 23, 434
XagI CCTNNNNNAGG 1 cut(s) 678
XapI RAATTY 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 3 cut(s) 257, 480, 843
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.