Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012004

Physical Location & Seq

Genomic Coordinates Forward (+)

25941629 .. 25944265

Gene Structure 2637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAGAACCGGAAAAGGAAATCAAGAGGAAGAAGATTACGGAGAAGAAGACTTTAACTCTAAACGTGAAGGTCCTTCTTCCAACACTACTGTTCATAGCAACAGAGATTCAAAGGAAAATGATAAAGCTAGTGCGATACGTTCTAAACATTCGGTCACTGAGCAACGTAGAAGAAGCAAAATCAATGAAAGATTTCAGATATTGAGAGAACTAATTCCCAACAGTGAACAAAAACGTGACACTGCTTCATTCCTTTTAGAGGTGATAGATTATGTTCAGTATTTACAAGAGAAGGTGCAAAAGTATGAAGGATCGTATCCAGGTTGGAGTCAGGAACCAACAAAGTTGACGCCATGGAGGAATAATCATTGGCGAGTTCAAAGTTTGGGGAACCACCCAGTAGCTATAAATAATGGATCTGGTCCAGGGATACCTTTTCCTGGAAAGTTTGAAGACAACACTGTGACTTCGACACCTGCAATTATTGCAGAACCGCAAATCCCGATTGAATCTGACAAAGCAAGAGCTATAACCGGCATATCGATTGAAAGTCAACCTGAGTTAGACGACAAAGGATTACCACCACTACAACCAATTCTTCCAATGGTACAAGGCGAACAAGCTAATGAATGTCCTGCAACTAGTGATGGGCTAGGCCAAAGTAATGACCTGGTTATTGAAGGTGGAACCATTAGCATCTCTAGTGCCTACTCGCATGAGTTATTGAGCTCATTAACACAAGCACTCCAGAATGCAGGCATTGATCTGTCGCAAGCAAAGCTTTCTGTGCAGATCGATCTTGGGAAGCGAGCCAATCAAGGTCTAACTCATGAAGAGCCATCAAGTAAGAATCCATTATCATATGATACGCAAGGAAGGGATTCAAGCGTTGAGGAAGAATCTGAACATTCTCACAAGCGGATGAAAACACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

311

Amino Acids

34.49

Weight (kDa)

5.23

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	47 - 96	1.4e-14	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69010
fragaria_vesca	FvH4_4g29230 FvH4_4g29230
malus_domestica	MD13G1056100.v1.1 MD16G1055100.v1.1
prunus_persica	Prupe.1G294200_v2.0.a1 Prupe.1G294200_v2.0.a1
pyrus_communis	pycom13g04970 pycom16g04800
rosa_chinensis	RchiOBHm_Chr4g0437281
rosa_laevigata	RLG00000006450
rosa_multiflora	Rmu_sc0004339.1_g000031
rosa_roxburghii	Rroxscaffold_5G00378420
rosa_rugosa	Rorug04G0299200
rosa_samantha	Rh4AG354000 Rh4BG363900 Rh4CG378200 Rh4DG357900
rosa_wichuraiana	Rw4G031050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	484
Acc36I	ACCTGC	1 cut(s)	484
AciI	CCGC	2 cut(s)	494, 919
AclWI	GGATC	2 cut(s)	319, 424
AcyI	GRCGYC	1 cut(s)	350
AfaI	GTAC	1 cut(s)	609
AfiI	CCNNNNNNNGG	2 cut(s)	259, 440
AgsI	TTSAA	7 cut(s)	111, 380, 452, 509, 548, 680, 885
AhlI	ACTAGT	1 cut(s)	641
AjnI	CCWGG	4 cut(s)	319, 424, 439, 669
AloI	GAACNNNNNNTCC	2 cut(s)	483, 515
AluBI	AGCT	6 cut(s)	128, 404, 527, 623, 729, 781
AluI	AGCT	6 cut(s)	128, 404, 527, 623, 729, 781
Alw21I	GWGCWC	1 cut(s)	731
AlwI	GGATC	2 cut(s)	319, 424
AoxI	GGCC	1 cut(s)	655
Asp700I	GAANNNNTTC	3 cut(s)	192, 213, 880
AspS9I	GGNCC	2 cut(s)	71, 422
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	2 cut(s)	71, 422
BanII	GRGCYC	1 cut(s)	731
BbsI	GAAGAC	2 cut(s)	54, 459
Bbv12I	GWGCWC	1 cut(s)	731
BccI	CCATC	2 cut(s)	641, 847
BciT130I	CCWGG	4 cut(s)	321, 426, 441, 671
BciVI	GTATCC	2 cut(s)	327, 423
BcuI	ACTAGT	1 cut(s)	641
BfaI	CTAG	4 cut(s)	129, 642, 653, 702
BfuAI	ACCTGC	1 cut(s)	484
BfuI	GTATCC	2 cut(s)	327, 423
Bme1390I	CCNGG	4 cut(s)	321, 426, 441, 671
Bme18I	GGWCC	2 cut(s)	71, 422
BmgT120I	GGNCC	2 cut(s)	71, 422
BmiI	GGNNCC	3 cut(s)	336, 392, 688
BmrFI	CCNGG	4 cut(s)	321, 426, 441, 671
BmrI	ACTGGG	1 cut(s)	392
BmsI	GCATC	1 cut(s)	705
BmuI	ACTGGG	1 cut(s)	392
BpiI	GAAGAC	2 cut(s)	54, 459
BpmI	CTGGAG	1 cut(s)	731
Bsa29I	ATCGAT	2 cut(s)	542, 795
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	2 cut(s)	353, 425
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 440
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	398
BseBI	CCWGG	4 cut(s)	321, 426, 441, 671
BseCI	ATCGAT	2 cut(s)	542, 795
BseDI	CCNNGG	2 cut(s)	353, 425
BseGI	GGATG	1 cut(s)	927
BseLI	CCNNNNNNNGG	2 cut(s)	259, 440
BseMII	CTCAG	2 cut(s)	150, 549
BseNI	ACTGG	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	809
BshFI	GGCC	1 cut(s)	657
BshVI	ATCGAT	2 cut(s)	542, 795
BsiHKAI	GWGCWC	1 cut(s)	731
BsiSI	CCGG	2 cut(s)	9, 534
BslI	CCNNNNNNNGG	2 cut(s)	259, 440
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	1 cut(s)	657
Bsp1286I	GDGCHC	1 cut(s)	731
Bsp143I	GATC	5 cut(s)	311, 416, 763, 792, 796
Bsp19I	CCATGG	1 cut(s)	353
BspACI	CCGC	2 cut(s)	494, 919
BspANI	GGCC	1 cut(s)	657
BspCNI	CTCAG	2 cut(s)	151, 550
BspDI	ATCGAT	2 cut(s)	542, 795
BspHI	TCATGA	1 cut(s)	829
BspLI	GGNNCC	3 cut(s)	336, 392, 688
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	2 cut(s)	319, 424
BspQI	GCTCTTC	1 cut(s)	828
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	398
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	2 cut(s)	353, 425
BssMI	GATC	5 cut(s)	311, 416, 763, 792, 796
BssNI	GRCGYC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	4 cut(s)	321, 426, 441, 671
Bst4CI	ACNGT	4 cut(s)	91, 224, 463, 933
Bst6I	CTCTTC	1 cut(s)	828
BstACI	GRCGYC	1 cut(s)	350
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstC8I	GCNNGC	3 cut(s)	757, 774, 810
BstDEI	CTNAG	2 cut(s)	159, 558
BstDSI	CCRYGG	1 cut(s)	353
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	927
BstKTI	GATC	5 cut(s)	314, 419, 766, 795, 799
BstMBI	GATC	5 cut(s)	311, 416, 763, 792, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	485, 778, 787
BstNI	CCWGG	4 cut(s)	321, 426, 441, 671
BstSCI	CCNGG	4 cut(s)	319, 424, 439, 669
BstV2I	GAAGAC	2 cut(s)	54, 459
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
Bsu15I	ATCGAT	2 cut(s)	542, 795
BsuI	GTATCC	2 cut(s)	327, 423
BsuRI	GGCC	1 cut(s)	657
BsuTUI	ATCGAT	2 cut(s)	542, 795
BtgI	CCRYGG	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	927
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	5 cut(s)	156, 229, 240, 459, 929
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	3 cut(s)	757, 774, 810
CciI	TCATGA	1 cut(s)	829
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	2 cut(s)	71, 422
ClaI	ATCGAT	2 cut(s)	542, 795
CseI	GACGC	1 cut(s)	358
CsiI	ACCWGGT	1 cut(s)	669
Csp6I	GTAC	1 cut(s)	608
CviAII	CATG	3 cut(s)	354, 716, 830
CviQI	GTAC	1 cut(s)	608
DdeI	CTNAG	2 cut(s)	159, 558
DpnI	GATC	5 cut(s)	313, 418, 765, 794, 798
DpnII	GATC	5 cut(s)	311, 416, 763, 792, 796
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
Ecl136II	GAGCTC	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	731
Eco47I	GGWCC	2 cut(s)	71, 422
Eco53kI	GAGCTC	1 cut(s)	729
EcoICRI	GAGCTC	1 cut(s)	729
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	4 cut(s)	319, 424, 439, 669
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	731
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	3 cut(s)	357, 719, 833
FalI	AAGNNNNNCTT	2 cut(s)	765, 797
FatI	CATG	3 cut(s)	353, 715, 829
FauNDI	CATATG	1 cut(s)	862
FriOI	GRGCYC	1 cut(s)	731
FspBI	CTAG	4 cut(s)	129, 642, 653, 702
GsuI	CTGGAG	1 cut(s)	731
HaeIII	GGCC	1 cut(s)	657
HapII	CCGG	2 cut(s)	9, 534
HgaI	GACGC	1 cut(s)	358
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	3 cut(s)	357, 719, 833
HincII	GTYRAC	2 cut(s)	348, 554
HindII	GTYRAC	2 cut(s)	348, 554
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	6 cut(s)	107, 328, 509, 850, 881, 899
HpaII	CCGG	2 cut(s)	9, 534
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	3 cut(s)	227, 348, 554
Hpy188I	TCNGA	3 cut(s)	198, 514, 904
Hpy188III	TCNNGA	5 cut(s)	23, 332, 502, 748, 830
Hpy8I	GTNNAC	3 cut(s)	227, 348, 554
HpyAV	CCTTC	6 cut(s)	62, 84, 286, 302, 674, 870
HpyCH4III	ACNGT	4 cut(s)	91, 224, 463, 933
HpyCH4IV	ACGT	4 cut(s)	64, 139, 166, 235
HpyCH4V	TGCA	6 cut(s)	298, 479, 488, 638, 755, 790
HpyF10VI	GCNNNNNNNGC	3 cut(s)	485, 778, 787
HpyF3I	CTNAG	2 cut(s)	159, 558
HpySE526I	ACGT	4 cut(s)	64, 139, 166, 235
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	3 cut(s)	357, 719, 833
Kzo9I	GATC	5 cut(s)	311, 416, 763, 792, 796
LguI	GCTCTTC	1 cut(s)	828
LweI	GCATC	1 cut(s)	705
MabI	ACCWGGT	1 cut(s)	669
MaeI	CTAG	4 cut(s)	129, 642, 653, 702
MaeII	ACGT	4 cut(s)	64, 139, 166, 235
MaeIII	GTNAC	3 cut(s)	154, 236, 463
MalI	GATC	5 cut(s)	313, 418, 765, 794, 798
MboI	GATC	5 cut(s)	311, 416, 763, 792, 796
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	731
MluCI	AATT	3 cut(s)	213, 480, 594
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	2 cut(s)	105, 305
MnlI	CCTC	4 cut(s)	19, 253, 351, 886
MroXI	GAANNNNTTC	3 cut(s)	192, 213, 880
MseI	TTAA	2 cut(s)	54, 734
MspI	CCGG	2 cut(s)	9, 534
MspR9I	CCNGG	4 cut(s)	321, 426, 441, 671
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	4 cut(s)	321, 426, 441, 671
MwoI	GCNNNNNNNGC	3 cut(s)	485, 778, 787
NcoI	CCATGG	1 cut(s)	353
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	5 cut(s)	311, 416, 763, 792, 796
NlaIII	CATG	3 cut(s)	357, 719, 833
NlaIV	GGNNCC	3 cut(s)	336, 392, 688
NmuCI	GTSAC	3 cut(s)	154, 236, 463
PagI	TCATGA	1 cut(s)	829
PaqCI	CACCTGC	1 cut(s)	484
PciSI	GCTCTTC	1 cut(s)	828
PctI	GAATGC	1 cut(s)	757
PdmI	GAANNNNTTC	3 cut(s)	192, 213, 880
PfeI	GAWTC	5 cut(s)	107, 509, 850, 881, 899
PfoI	TCCNGGA	1 cut(s)	439
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PpuMI	RGGWCCY	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	731
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	4 cut(s)	319, 424, 439, 669
PspGI	CCWGG	4 cut(s)	319, 424, 439, 669
PspN4I	GGNNCC	3 cut(s)	336, 392, 688
PspPI	GGNCC	2 cut(s)	71, 422
PspPPI	RGGWCCY	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
SacI	GAGCTC	1 cut(s)	731
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	2 cut(s)	54, 734
Sau3AI	GATC	5 cut(s)	311, 416, 763, 792, 796
Sau96I	GGNCC	2 cut(s)	71, 422
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	4 cut(s)	321, 426, 441, 671
SduI	GDGCHC	1 cut(s)	731
SexAI	ACCWGGT	1 cut(s)	669
SfaNI	GCATC	1 cut(s)	705
SinI	GGWCC	2 cut(s)	71, 422
SpeI	ACTAGT	1 cut(s)	641
Sse9I	AATT	3 cut(s)	213, 480, 594
SsiI	CCGC	2 cut(s)	494, 919
SspMI	CTAG	4 cut(s)	129, 642, 653, 702
SstI	GAGCTC	1 cut(s)	731
StyD4I	CCNGG	4 cut(s)	319, 424, 439, 669
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	4 cut(s)	91, 224, 463, 933
TaiI	ACGT	4 cut(s)	67, 142, 169, 238
TaqI	TCGA	3 cut(s)	470, 542, 795
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	3 cut(s)	213, 480, 594
TfiI	GAWTC	5 cut(s)	107, 509, 850, 881, 899
Tru1I	TTAA	2 cut(s)	54, 734
Tru9I	TTAA	2 cut(s)	54, 734
TscAI	CASTG	5 cut(s)	163, 229, 247, 466, 936
TseFI	GTSAC	3 cut(s)	154, 236, 463
Tsp45I	GTSAC	3 cut(s)	154, 236, 463
TspDTI	ATGAA	6 cut(s)	83, 201, 237, 321, 642, 846
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	5 cut(s)	163, 229, 247, 466, 936
VpaK11BI	GGWCC	2 cut(s)	71, 422
XagI	CCTNNNNNAGG	1 cut(s)	257
XmnI	GAANNNNTTC	3 cut(s)	192, 213, 880
XspI	CTAG	4 cut(s)	129, 642, 653, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.