Prupe.1G294200_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012004
Physical Location & Seq
Reverse (-)
29142789 .. 29146806
4018 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G294200.2

Sequence Viewer

Length: 1008 bp
ATGAGAACCGCAGCCAAAGGCAATCAGGAGGAGGATGACTACGACGACGAGGAATTTGGCTCCAGAAAAGAGGGCCCTTCTTCCAATTCCAACAGCAAAGATGCCAAGAACAACGATAAGGCTAGTGCTATACGATCGAAACATTCAGTCACGGAGCAGCGAAGGAGGAGCAAGATCAACGAGAGATTCCAGATATTGAGAGATTTAATACCCCATAGTGATCAAAAAAGAGATACGGCATCATTCCTGCTCGAGGTACTGTTGTTTTATGTCCAATATTTACAAGAAAAAGTCCACAAATATGAAGGTTCATACCAGGGGTGGAGTCCTGAGCCCACAAAGTTAATGCCATGGAGAAATAGTCACTGGCGTGTGCAGAGTTTTGTGGGTCATCCTCAGGCCGGAAAGAATGATACTGGTGCAGTGTCACCTTTTCCTGGAAAATTTGATGAAAATGGCATTTCTATCACCCCGAACATGCTTGCAAATAGCACACAGAATCCAGTAGAATCTGATCCTAGCAGGGATGTTGCTTCCAAAATTATGGATCGGCAACCTGAGATAGTGAACAAGGCAATTCCTCTGCCTATGCCTTTGCCAGTTAACATGGCCCCCGTCAGAAGTGATGGTATACTTGCCCATCCTCTTCAGGGACCAGTTTCTGATGCCCAATCAACTCAGTGCCCCACCACTAGTGCTAGTGATGCACTGAATCAACAGGAGGAGCTGACAATTGAAGGTGGCACAATAAGCATCTCAAGTGTTTACTCACAAGGGTTATTAAACTCTCTGAATCAAGCACTGCAGAGTGCTGGTGTTGATCTGTCACAGGCTAGTGTCTCAGTGCAGATTGATCTTGGAAATCGTGCAAACCGAGGGCTATCCTCTGGAACACCTGCTTCTAAGGATCATGAGATTCCCCATTCAAGCAATCAAACAGTGGCACATTTTAGGGATGCTGGCAGTGGAGAGGACTCAGATCAAGCTCATAAGCGCATGAAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

336

Amino Acids

36.76

Weight (kDa)

5.94

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69010
fragaria_vesca FvH4_4g29230 FvH4_4g29230
malus_domestica MD13G1056100.v1.1 MD16G1055100.v1.1
prunus_persica Prupe.1G294200_v2.0.a1 Prupe.1G294200_v2.0.a1
pyrus_communis pycom13g04970 pycom16g04800
rosa_chinensis RchiOBHm_Chr4g0437281
rosa_laevigata RLG00000006450
rosa_multiflora Rmu_sc0004339.1_g000031
rosa_roxburghii Rroxscaffold_5G00378420
rosa_rugosa Rorug04G0299200
rosa_samantha Rh4AG354000 Rh4BG363900 Rh4CG378200 Rh4DG357900
rosa_wichuraiana Rw4G031050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 904
Acc36I ACCTGC 1 cut(s) 904
AccI GTMKAC 1 cut(s) 631
AciI CCGC 1 cut(s) 9
AclWI GGATC 3 cut(s) 509, 555, 915
AcsI RAATTY 2 cut(s) 53, 443
AcuI CTGAAG 1 cut(s) 632
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 4 cut(s) 253, 401, 437, 650
AgsI TTSAA 2 cut(s) 737, 927
AhlI ACTAGT 1 cut(s) 692
AjnI CCWGG 2 cut(s) 315, 436
AleI CACNNNNGTG 1 cut(s) 369
AluBI AGCT 2 cut(s) 727, 986
AluI AGCT 2 cut(s) 727, 986
Alw26I GTCTC 1 cut(s) 844
AlwI GGATC 3 cut(s) 509, 555, 915
AlwNI CAGNNNCTG 1 cut(s) 662
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 3 cut(s) 73, 399, 609
ApaI GGGCCC 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 11, 157
ApoI RAATTY 2 cut(s) 53, 443
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AspLEI GCGC 1 cut(s) 996
AspS9I GGNCC 4 cut(s) 73, 74, 610, 653
AsuHPI GGTGA 2 cut(s) 420, 460
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 653
AxyI CCTNAGG 1 cut(s) 396
BaeGI GKGCMC 2 cut(s) 77, 686
BaeI ACNNNNGTAYC 2 cut(s) 248, 281
BanII GRGCYC 2 cut(s) 77, 336
BbvI GCAGC 2 cut(s) 23, 169
BccI CCATC 2 cut(s) 620, 648
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 2 cut(s) 317, 438
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 844
BcuI ACTAGT 1 cut(s) 692
BfaI CTAG 5 cut(s) 123, 519, 693, 699, 834
BfmI CTRYAG 1 cut(s) 803
BfuAI ACCTGC 1 cut(s) 904
BisI GCNGC 2 cut(s) 12, 158
BlsI GCNGC 2 cut(s) 13, 159
Bme1390I CCNGG 2 cut(s) 317, 438
Bme18I GGWCC 1 cut(s) 653
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 4 cut(s) 73, 74, 610, 653
BmiI GGNNCC 4 cut(s) 61, 75, 612, 654
BmrFI CCNGG 2 cut(s) 317, 438
BmsI GCATC 6 cut(s) 91, 248, 655, 694, 762, 946
BpmI CTGGAG 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 742
BsaJI CCNNGG 3 cut(s) 316, 350, 874
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bsc4I CCNNNNNNNGG 4 cut(s) 253, 401, 437, 650
Bse1I ACTGG 5 cut(s) 371, 421, 503, 599, 656
Bse21I CCTNAGG 1 cut(s) 396
BseBI CCWGG 2 cut(s) 317, 438
BseDI CCNNGG 3 cut(s) 316, 350, 874
BseGI GGATG 5 cut(s) 40, 391, 532, 640, 961
BseLI CCNNNNNNNGG 4 cut(s) 253, 401, 437, 650
BseMII CTCAG 6 cut(s) 321, 410, 549, 692, 855, 990
BseNI ACTGG 5 cut(s) 371, 421, 503, 599, 656
BseRI GAGGAG 3 cut(s) 44, 181, 737
BseSI GKGCMC 2 cut(s) 77, 686
BseXI GCAGC 2 cut(s) 23, 169
BsgI GTGCAG 3 cut(s) 395, 441, 866
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 3 cut(s) 75, 401, 611
BsiEI CGRYCG 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 4 cut(s) 253, 401, 437, 650
BsmAI GTCTC 1 cut(s) 844
BsmFI GGGAC 1 cut(s) 666
BsnI GGCC 3 cut(s) 75, 401, 611
BsoBI CYCGRG 1 cut(s) 251
Bsp120I GGGCCC 1 cut(s) 73
Bsp1286I GDGCHC 3 cut(s) 77, 336, 686
Bsp143I GATC 9 cut(s) 134, 174, 220, 514, 547, 820, 853, 907, 979
Bsp19I CCATGG 1 cut(s) 350
BspACI CCGC 1 cut(s) 9
BspANI GGCC 3 cut(s) 75, 401, 611
BspCNI CTCAG 6 cut(s) 322, 409, 550, 691, 854, 989
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 4 cut(s) 61, 75, 612, 654
BspMAI CTGCAG 1 cut(s) 807
BspMI ACCTGC 1 cut(s) 904
BspPI GGATC 3 cut(s) 509, 555, 915
BsrI ACTGG 5 cut(s) 371, 421, 503, 599, 656
BssECI CCNNGG 3 cut(s) 316, 350, 874
BssMI GATC 9 cut(s) 134, 174, 220, 514, 547, 820, 853, 907, 979
BssNAI GTATAC 1 cut(s) 632
BssT1I CCWWGG 1 cut(s) 350
Bst1107I GTATAC 1 cut(s) 632
Bst2UI CCWGG 2 cut(s) 317, 438
Bst4CI ACNGT 2 cut(s) 261, 940
Bst6I CTCTTC 1 cut(s) 651
BstC8I GCNNGC 2 cut(s) 483, 961
BstDEI CTNAG 7 cut(s) 330, 396, 558, 678, 841, 903, 976
BstDSI CCRYGG 1 cut(s) 350
BstENI CCTNNNNNAGG 1 cut(s) 251
BstF5I GGATG 5 cut(s) 40, 391, 532, 640, 961
BstHHI GCGC 1 cut(s) 996
BstKTI GATC 9 cut(s) 137, 177, 223, 517, 550, 823, 856, 910, 982
BstMAI GTCTC 1 cut(s) 844
BstMBI GATC 9 cut(s) 134, 174, 220, 514, 547, 820, 853, 907, 979
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 2 cut(s) 704, 750
BstNI CCWGG 2 cut(s) 317, 438
BstNSI RCATGY 1 cut(s) 481
BstSCI CCNGG 2 cut(s) 315, 436
BstSFI CTRYAG 1 cut(s) 803
BstSLI GKGCMC 2 cut(s) 77, 686
BstV1I GCAGC 2 cut(s) 23, 169
BstXI CCANNNNNNTGG 1 cut(s) 544
BstZ17I GTATAC 1 cut(s) 632
Bsu36I CCTNAGG 1 cut(s) 396
BsuRI GGCC 3 cut(s) 75, 401, 611
BtgI CCRYGG 1 cut(s) 350
BtsCI GGATG 5 cut(s) 40, 391, 532, 640, 961
BtsI GCAGTG 3 cut(s) 429, 800, 970
BtsIMutI CAGTG 8 cut(s) 364, 429, 686, 707, 800, 849, 945, 970
BveI ACCTGC 1 cut(s) 904
Cac8I GCNNGC 2 cut(s) 483, 961
CaiI CAGNNNCTG 1 cut(s) 662
CciI TCATGA 1 cut(s) 910
CfoI GCGC 1 cut(s) 996
Cfr13I GGNCC 4 cut(s) 73, 74, 610, 653
Csp6I GTAC 1 cut(s) 257
CviAII CATG 5 cut(s) 351, 478, 607, 911, 997
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 7 cut(s) 330, 396, 558, 678, 841, 903, 976
DpnI GATC 9 cut(s) 136, 176, 222, 516, 549, 822, 855, 909, 981
DpnII GATC 9 cut(s) 134, 174, 220, 514, 547, 820, 853, 907, 979
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
Eco130I CCWWGG 1 cut(s) 350
Eco24I GRGCYC 2 cut(s) 77, 336
Eco47I GGWCC 1 cut(s) 653
Eco57I CTGAAG 1 cut(s) 632
Eco81I CCTNAGG 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoO109I RGGNCCY 2 cut(s) 73, 74
EcoRII CCWGG 2 cut(s) 315, 436
EcoT14I CCWWGG 1 cut(s) 350
EcoT38I GRGCYC 2 cut(s) 77, 336
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 5 cut(s) 354, 481, 610, 914, 1000
FaqI GGGAC 1 cut(s) 666
FatI CATG 5 cut(s) 350, 477, 606, 910, 996
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 1 cut(s) 631
Fnu4HI GCNGC 2 cut(s) 12, 158
FokI GGATG 5 cut(s) 47, 378, 539, 627, 968
FriOI GRGCYC 2 cut(s) 77, 336
Fsp4HI GCNGC 2 cut(s) 12, 158
FspBI CTAG 5 cut(s) 123, 519, 693, 699, 834
GlaI GCGC 1 cut(s) 995
GluI GCNGC 2 cut(s) 12, 158
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 3 cut(s) 75, 401, 611
HapII CCGG 1 cut(s) 402
HhaI GCGC 1 cut(s) 996
Hin1II CATG 5 cut(s) 354, 481, 610, 914, 1000
Hin6I GCGC 1 cut(s) 994
HinP1I GCGC 1 cut(s) 994
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 8 cut(s) 186, 325, 499, 509, 712, 793, 916, 974
HpaI GTTAAC 1 cut(s) 604
HpaII CCGG 1 cut(s) 402
HphI GGTGA 2 cut(s) 420, 460
Hpy166II GTNNAC 5 cut(s) 295, 568, 604, 632, 766
Hpy188I TCNGA 5 cut(s) 514, 620, 664, 792, 979
Hpy188III TCNNGA 6 cut(s) 26, 63, 190, 329, 888, 911
Hpy8I GTNNAC 5 cut(s) 295, 568, 604, 632, 766
Hpy99I CGWCG 2 cut(s) 47, 50
HpyAV CCTTC 4 cut(s) 87, 156, 299, 731
HpyCH4III ACNGT 2 cut(s) 261, 940
HpyCH4V TGCA 7 cut(s) 376, 422, 485, 707, 805, 847, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 704, 750
HpyF3I CTNAG 7 cut(s) 330, 396, 558, 678, 841, 903, 976
Hsp92II CATG 5 cut(s) 354, 481, 610, 914, 1000
HspAI GCGC 1 cut(s) 994
Ksp22I TGATCA 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 604
Kzo9I GATC 9 cut(s) 134, 174, 220, 514, 547, 820, 853, 907, 979
LmnI GCTCC 4 cut(s) 65, 154, 168, 724
Lsp1109I GCAGC 2 cut(s) 23, 169
LweI GCATC 6 cut(s) 91, 248, 655, 694, 762, 946
MaeI CTAG 5 cut(s) 123, 519, 693, 699, 834
MaeIII GTNAC 4 cut(s) 148, 362, 426, 825
MalI GATC 9 cut(s) 136, 176, 222, 516, 549, 822, 855, 909, 981
MboI GATC 9 cut(s) 134, 174, 220, 514, 547, 820, 853, 907, 979
MboII GAAGA 2 cut(s) 72, 638
MfeI CAATTG 1 cut(s) 732
MhlI GDGCHC 3 cut(s) 77, 336, 686
MluCI AATT 6 cut(s) 53, 85, 443, 540, 576, 732
MlyI GAGTC 2 cut(s) 334, 968
MmeI TCCRAC 1 cut(s) 114
MseI TTAA 4 cut(s) 206, 344, 603, 782
MslI CAYNNNNRTG 2 cut(s) 300, 369
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 2 cut(s) 317, 438
MunI CAATTG 1 cut(s) 732
MvaI CCWGG 2 cut(s) 317, 438
MwoI GCNNNNNNNGC 2 cut(s) 704, 750
NcoI CCATGG 1 cut(s) 350
NdeII GATC 9 cut(s) 134, 174, 220, 514, 547, 820, 853, 907, 979
NlaIII CATG 5 cut(s) 354, 481, 610, 914, 1000
NlaIV GGNNCC 4 cut(s) 61, 75, 612, 654
NmuCI GTSAC 4 cut(s) 148, 362, 426, 825
NspI RCATGY 1 cut(s) 481
OliI CACNNNNGTG 1 cut(s) 369
PaeR7I CTCGAG 1 cut(s) 251
PagI TCATGA 1 cut(s) 910
PaqCI CACCTGC 1 cut(s) 904
PcsI WCGNNNNNNNCGW 1 cut(s) 871
PfeI GAWTC 6 cut(s) 186, 499, 509, 712, 793, 916
PfoI TCCNGGA 1 cut(s) 436
PkrI GCNGC 2 cut(s) 13, 159
Ple19I CGATCG 1 cut(s) 137
PleI GAGTC 2 cut(s) 333, 968
PpsI GAGTC 2 cut(s) 333, 968
Psp6I CCWGG 2 cut(s) 315, 436
PspGI CCWGG 2 cut(s) 315, 436
PspN4I GGNNCC 4 cut(s) 61, 75, 612, 654
PspOMI GGGCCC 1 cut(s) 73
PspPI GGNCC 4 cut(s) 73, 74, 610, 653
PspXI VCTCGAGB 1 cut(s) 251
PstI CTGCAG 1 cut(s) 807
PstNI CAGNNNCTG 1 cut(s) 662
PvuI CGATCG 1 cut(s) 137
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 2 cut(s) 300, 369
SaqAI TTAA 4 cut(s) 206, 344, 603, 782
SatI GCNGC 2 cut(s) 12, 158
Sau3AI GATC 9 cut(s) 134, 174, 220, 514, 547, 820, 853, 907, 979
Sau96I GGNCC 4 cut(s) 73, 74, 610, 653
SchI GAGTC 2 cut(s) 334, 968
ScrFI CCNGG 2 cut(s) 317, 438
SduI GDGCHC 3 cut(s) 77, 336, 686
SetI ASST 8 cut(s) 258, 310, 433, 559, 729, 742, 898, 988
SfaNI GCATC 6 cut(s) 91, 248, 655, 694, 762, 946
SfcI CTRYAG 1 cut(s) 803
Sfr274I CTCGAG 1 cut(s) 251
SinI GGWCC 1 cut(s) 653
SlaI CTCGAG 1 cut(s) 251
SmiMI CAYNNNNRTG 2 cut(s) 300, 369
SmlI CTYRAG 2 cut(s) 251, 757
SmoI CTYRAG 2 cut(s) 251, 757
SpeI ACTAGT 1 cut(s) 692
Sse9I AATT 6 cut(s) 53, 85, 443, 540, 576, 732
SsiI CCGC 1 cut(s) 9
SspI AATATT 1 cut(s) 278
SspMI CTAG 5 cut(s) 123, 519, 693, 699, 834
StyD4I CCNGG 2 cut(s) 315, 436
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 2 cut(s) 261, 940
TaqI TCGA 2 cut(s) 137, 252
TasI AATT 6 cut(s) 53, 85, 443, 540, 576, 732
TfiI GAWTC 6 cut(s) 186, 499, 509, 712, 793, 916
Tru1I TTAA 4 cut(s) 206, 344, 603, 782
Tru9I TTAA 4 cut(s) 206, 344, 603, 782
TscAI CASTG 8 cut(s) 371, 429, 686, 714, 807, 849, 945, 970
TseFI GTSAC 4 cut(s) 148, 362, 426, 825
TseI GCWGC 2 cut(s) 11, 157
Tsp45I GTSAC 4 cut(s) 148, 362, 426, 825
TspDTI ATGAA 3 cut(s) 300, 318, 465
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 8 cut(s) 371, 429, 686, 714, 807, 849, 945, 970
VpaK11BI GGWCC 1 cut(s) 653
XagI CCTNNNNNAGG 1 cut(s) 251
XapI RAATTY 2 cut(s) 53, 443
XceI RCATGY 1 cut(s) 481
XhoI CTCGAG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 631
XspI CTAG 5 cut(s) 123, 519, 693, 699, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.