Rh4BG363900

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012004
Physical Location & Seq
Forward (+)
52206973 .. 52209247
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG363900.1

Sequence Viewer

Length: 1014 bp
ATGAGAAGCGCAGGGAAAGGTAGTCAGGAGGAGGATGAGTACGAAGACGACGACTTTGGCTCCAAGAAAGATGGGCCTTCTTCCAATTCATCCAATCCCAACAGTAAAGATGCTAAGAGCAACGATAAGGCTAGTGCTATACGGTCGAAGCATTCGGTGACGGAGCAGCGGAGAAGGAGCAAGATCAATGAGAGATTCCAGATATTGAGAGATCTAATACCCCATAGTGAGCAAAAGCGAGATACGGCATCGTTCTTGCTAGAGGTGATCGAATATGTCCAGTATTTACAGGAAAGGGTCAACAAACATGAAGGTTCGTGCCAGGGGTGGAGTGCAGAGCCCACAAAGTTAATGCCATGGAGAAATAGCCACTGGCGTGTTCAGAGTTTTGTTGGTCCTCCTCAGCCGATAAAGAATGATACTGGTGTAATTTCACCATTTCCTGGAAAGTTTGATGAAAATAACATCTCTATTACTCCGAATATTCTTGCAAACAGCACAAAGAATCCCGTAGAATCTGAACCTAGCAGGGACGTTGCCTCTAAAGTCATGGATCAGCCACCTGAGATAGTGAATAAGGGACTTCCTCTGCCTATGCCTCTGCCAGAAAATCTGCTCCCCCCTGTCAGAAATGATGGTATGCTTGCCCGTCCTCTGCACGGACCAATTTCTGATGCTCAATCAACTCAATGCCCCACCACCAGTGGTGATGCACTGAATCAACGGGAGGAGCTGACTATCGAAGGTGGAACAATAAGCATCTCAAGTGTTTACTCACAAGGGTTATTGAACTCTCTGAGTCATGCACTTCAGACTGCAGGTGTAGATCTGTCACAGGCTAGTGTCTCAGTGCAGATTGATCTTGGTAATCGCGCAAACCGAGGGCTGTCTGCTGGAACACCTGCTTCTAAGGATCATGAGAATCCACATTCGAGCAATCAAACGATGGCACATTTTAGGGATGCTGGCAGTGGAGATGATTCGGATCAAGCTCATAAGCGGCTGAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

337

Amino Acids

36.89

Weight (kDa)

5.95

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 48 - 97 2.7e-14 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69010
fragaria_vesca FvH4_4g29230 FvH4_4g29230
malus_domestica MD13G1056100.v1.1 MD16G1055100.v1.1
prunus_persica Prupe.1G294200_v2.0.a1 Prupe.1G294200_v2.0.a1
pyrus_communis pycom13g04970 pycom16g04800
rosa_chinensis RchiOBHm_Chr4g0437281
rosa_laevigata RLG00000006450
rosa_multiflora Rmu_sc0004339.1_g000031
rosa_roxburghii Rroxscaffold_5G00378420
rosa_rugosa Rorug04G0299200
rosa_samantha Rh4AG354000 Rh4BG363900 Rh4CG378200 Rh4DG357900
rosa_wichuraiana Rw4G031050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 809, 910
Acc36I ACCTGC 2 cut(s) 809, 910
AccB7I CCANNNNNTGG 1 cut(s) 443
AccII CGCG 1 cut(s) 873
AciI CCGC 2 cut(s) 169, 1000
AclWI GGATC 3 cut(s) 561, 921, 993
AcuI CTGAAG 1 cut(s) 794
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 443, 659
AgsI TTSAA 1 cut(s) 790
AjnI CCWGG 2 cut(s) 321, 442
AleI CACNNNNGTG 1 cut(s) 375
AluBI AGCT 2 cut(s) 733, 992
AluI AGCT 2 cut(s) 733, 992
Alw26I GTCTC 1 cut(s) 850
AlwI GGATC 3 cut(s) 561, 921, 993
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 166
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AspLEI GCGC 2 cut(s) 11, 875
AspS9I GGNCC 3 cut(s) 74, 395, 662
AsuHPI GGTGA 4 cut(s) 169, 277, 426, 719
AvaII GGWCC 2 cut(s) 395, 662
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 178
BccI CCATC 3 cut(s) 65, 629, 940
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 2 cut(s) 323, 444
BcoDI GTCTC 1 cut(s) 850
BfaI CTAG 4 cut(s) 132, 260, 525, 840
BfmI CTRYAG 1 cut(s) 816
BfuAI ACCTGC 2 cut(s) 809, 910
BglII AGATCT 2 cut(s) 211, 826
BisI GCNGC 2 cut(s) 167, 1001
BlsI GCNGC 2 cut(s) 168, 1002
Bme1390I CCNGG 2 cut(s) 323, 444
Bme18I GGWCC 2 cut(s) 395, 662
BmgT120I GGNCC 3 cut(s) 74, 395, 662
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 323, 444
BmsI GCATC 6 cut(s) 100, 257, 664, 700, 768, 952
BpiI GAAGAC 1 cut(s) 51
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 748
BsaBI GATNNNNATC 1 cut(s) 984
BsaJI CCNNGG 3 cut(s) 322, 356, 880
BsaXI ACNNNNNCTCC 4 cut(s) 23, 44, 53, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 443, 659
Bse1I ACTGG 4 cut(s) 280, 377, 427, 702
Bse8I GATNNNNATC 1 cut(s) 984
BseBI CCWGG 2 cut(s) 323, 444
BseDI CCNNGG 3 cut(s) 322, 356, 880
BseGI GGATG 3 cut(s) 40, 89, 967
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 2 cut(s) 443, 659
BseMII CTCAG 4 cut(s) 416, 555, 788, 861
BseNI ACTGG 4 cut(s) 280, 377, 427, 702
BseRI GAGGAG 3 cut(s) 44, 390, 743
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 3 cut(s) 354, 641, 872
Bsh1236I CGCG 1 cut(s) 873
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 1 cut(s) 76
BsiEI CGRYCG 1 cut(s) 146
BslFI GGGAC 2 cut(s) 545, 594
BslI CCNNNNNNNGG 2 cut(s) 443, 659
BsmAI GTCTC 1 cut(s) 850
BsmFI GGGAC 2 cut(s) 545, 594
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 8 cut(s) 183, 211, 267, 553, 826, 859, 913, 985
Bsp19I CCATGG 1 cut(s) 356
BspACI CCGC 2 cut(s) 169, 1000
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 4 cut(s) 415, 556, 789, 860
BspFNI CGCG 1 cut(s) 873
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 820
BspMI ACCTGC 2 cut(s) 809, 910
BspPI GGATC 3 cut(s) 561, 921, 993
BsrI ACTGG 4 cut(s) 280, 377, 427, 702
BssECI CCNNGG 3 cut(s) 322, 356, 880
BssMI GATC 8 cut(s) 183, 211, 267, 553, 826, 859, 913, 985
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 2 cut(s) 323, 444
Bst4CI ACNGT 2 cut(s) 104, 144
BstC8I GCNNGC 2 cut(s) 645, 967
BstDEI CTNAG 6 cut(s) 114, 402, 564, 797, 847, 909
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 3 cut(s) 40, 89, 967
BstFNI CGCG 1 cut(s) 873
BstHHI GCGC 2 cut(s) 11, 875
BstKTI GATC 8 cut(s) 186, 214, 270, 556, 829, 862, 916, 988
BstMAI GTCTC 1 cut(s) 850
BstMBI GATC 8 cut(s) 183, 211, 267, 553, 826, 859, 913, 985
BstMCI CGRYCG 1 cut(s) 146
BstNI CCWGG 2 cut(s) 323, 444
BstSCI CCNGG 2 cut(s) 321, 442
BstSFI CTRYAG 1 cut(s) 816
BstUI CGCG 1 cut(s) 873
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 211, 826
BstYI RGATCY 2 cut(s) 211, 826
BsuRI GGCC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 3 cut(s) 40, 89, 967
BtsI GCAGTG 1 cut(s) 976
BtsIMutI CAGTG 5 cut(s) 370, 709, 713, 855, 976
BveI ACCTGC 2 cut(s) 809, 910
Cac8I GCNNGC 2 cut(s) 645, 967
CciI TCATGA 1 cut(s) 916
CfoI GCGC 2 cut(s) 11, 875
Cfr13I GGNCC 3 cut(s) 74, 395, 662
Csp6I GTAC 1 cut(s) 40
CviAII CATG 5 cut(s) 308, 357, 550, 803, 917
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 6 cut(s) 114, 402, 564, 797, 847, 909
DpnI GATC 8 cut(s) 185, 213, 269, 555, 828, 861, 915, 987
DpnII GATC 8 cut(s) 183, 211, 267, 553, 826, 859, 913, 985
Eco130I CCWWGG 1 cut(s) 356
Eco24I GRGCYC 1 cut(s) 342
Eco47I GGWCC 2 cut(s) 395, 662
Eco57I CTGAAG 1 cut(s) 794
EcoRII CCWGG 2 cut(s) 321, 442
EcoT14I CCWWGG 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 5 cut(s) 311, 360, 553, 806, 920
FaqI GGGAC 2 cut(s) 545, 594
FatI CATG 5 cut(s) 307, 356, 549, 802, 916
Fnu4HI GCNGC 2 cut(s) 167, 1001
FokI GGATG 3 cut(s) 47, 76, 974
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 2 cut(s) 167, 1001
FspBI CTAG 4 cut(s) 132, 260, 525, 840
GlaI GCGC 2 cut(s) 10, 874
GluI GCNGC 2 cut(s) 167, 1001
HaeIII GGCC 1 cut(s) 76
HhaI GCGC 2 cut(s) 11, 875
Hin1II CATG 5 cut(s) 311, 360, 553, 806, 920
Hin6I GCGC 2 cut(s) 9, 873
HinP1I GCGC 2 cut(s) 9, 873
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 7 cut(s) 195, 505, 515, 718, 799, 922, 980
HphI GGTGA 4 cut(s) 169, 277, 426, 719
Hpy166II GTNNAC 2 cut(s) 301, 772
Hpy188I TCNGA 8 cut(s) 384, 480, 520, 629, 673, 798, 813, 985
Hpy188III TCNNGA 3 cut(s) 26, 199, 917
Hpy8I GTNNAC 2 cut(s) 301, 772
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 4 cut(s) 87, 168, 305, 737
HpyCH4III ACNGT 2 cut(s) 104, 144
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 7 cut(s) 335, 491, 658, 713, 806, 818, 853
HpyF3I CTNAG 6 cut(s) 114, 402, 564, 797, 847, 909
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 5 cut(s) 311, 360, 553, 806, 920
HspAI GCGC 2 cut(s) 9, 873
Kzo9I GATC 8 cut(s) 183, 211, 267, 553, 826, 859, 913, 985
LmnI GCTCC 5 cut(s) 65, 163, 177, 621, 730
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 6 cut(s) 100, 257, 664, 700, 768, 952
MaeI CTAG 4 cut(s) 132, 260, 525, 840
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 2 cut(s) 157, 831
MalI GATC 8 cut(s) 185, 213, 269, 555, 828, 861, 915, 987
MboI GATC 8 cut(s) 183, 211, 267, 553, 826, 859, 913, 985
MboII GAAGA 2 cut(s) 56, 72
MflI RGATCY 2 cut(s) 211, 826
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 3 cut(s) 85, 429, 666
MlyI GAGTC 1 cut(s) 808
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 169
MspR9I CCNGG 2 cut(s) 323, 444
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 2 cut(s) 323, 444
MvnI CGCG 1 cut(s) 873
NcoI CCATGG 1 cut(s) 356
NdeII GATC 8 cut(s) 183, 211, 267, 553, 826, 859, 913, 985
NlaIII CATG 5 cut(s) 311, 360, 553, 806, 920
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 157, 831
OliI CACNNNNGTG 1 cut(s) 375
PagI TCATGA 1 cut(s) 916
PaqCI CACCTGC 2 cut(s) 809, 910
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 877
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 6 cut(s) 195, 505, 515, 718, 922, 980
PflMI CCANNNNNTGG 1 cut(s) 443
PfoI TCCNGGA 1 cut(s) 442
PkrI GCNGC 2 cut(s) 168, 1002
PleI GAGTC 1 cut(s) 807
PpsI GAGTC 1 cut(s) 807
Psp6I CCWGG 2 cut(s) 321, 442
PspGI CCWGG 2 cut(s) 321, 442
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 3 cut(s) 74, 395, 662
PstI CTGCAG 1 cut(s) 820
PsuI RGATCY 2 cut(s) 211, 826
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 2 cut(s) 167, 1001
Sau3AI GATC 8 cut(s) 183, 211, 267, 553, 826, 859, 913, 985
Sau96I GGNCC 3 cut(s) 74, 395, 662
SchI GAGTC 1 cut(s) 808
ScrFI CCNGG 2 cut(s) 323, 444
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 6 cut(s) 100, 257, 664, 700, 768, 952
SfcI CTRYAG 1 cut(s) 816
SinI GGWCC 2 cut(s) 395, 662
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 763
SmoI CTYRAG 1 cut(s) 763
Sse9I AATT 3 cut(s) 85, 429, 666
SsiI CCGC 2 cut(s) 169, 1000
SspI AATATT 1 cut(s) 484
SspMI CTAG 4 cut(s) 132, 260, 525, 840
StyD4I CCNGG 2 cut(s) 321, 442
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 104, 144
TaiI ACGT 1 cut(s) 537
TaqI TCGA 4 cut(s) 146, 270, 741, 932
TasI AATT 3 cut(s) 85, 429, 666
TauI GCSGC 1 cut(s) 1003
TfiI GAWTC 6 cut(s) 195, 505, 515, 718, 922, 980
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 5 cut(s) 377, 709, 720, 855, 976
TseFI GTSAC 2 cut(s) 157, 831
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 2 cut(s) 157, 831
TspDTI ATGAA 3 cut(s) 78, 324, 471
TspGWI ACGGA 2 cut(s) 176, 675
TspRI CASTG 5 cut(s) 377, 709, 720, 855, 976
Van91I CCANNNNNTGG 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 395, 662
XspI CTAG 4 cut(s) 132, 260, 525, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.