Rh4DG357900

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0012004
Physical Location & Seq
Forward (+)
57887264 .. 57890810
3547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG357900.1

Sequence Viewer

Length: 1008 bp
ATGAGAAGCGCAGGGAAAGGTAGTCAGGAGGAGGATGAGTACGAAGACGACGACTTTGGCTCCAAGAAAGATGGGCCTTCTTCCAATTCATCCAATCCCAACAGTAAAGATGCTAAGAGCAACGATAAGGCTAGTGCTATACGGTCGAAGCATTCGGTGACGGAGCAGCGGAGAAGGAGCAAGATCAATGAGAGATTCCAGATATTGAGAGATCTAATACCCCATAGTGAGCAAAAGCGAGATACGGCATCGTTCTTGCTAGAGGTGATCGAATATGTCCAGTATTTACAGGAAAGGGTCAACAAACATGAAGGTTCTTGCCAGGGGTGGAGTGCAGAGCCCACAAAGTTAATGCCATGGAGAAATAGCCACTGGCGTGTTCAGAGTTTTGTTGGTCCTCCTCAGCCGATAAAGAATGATACTGGTGTAATTTCACCATTTCCTGGAAAGTTTGATGAAAATAACATCTCTATTACTCCGAATATTCTTGCAAACAGCACAAAGAATCCCGTAGAATCTGAACCTAGCAGGGACTCTAAAGTCATGGATCAGCCACCTGAGATAGTGAATAAGGGACTTCCTCCGCCTATGCCTCTGCCAGAAAATCTGCTTCCCCCTGTCGGAAATGATGGTATGCTTGCCCGTCCTCTGCACGGGCCAATTTCTGATGCTCAATCAACTCAATGCCCCACCACCAGTGGTGATGCACTGAATCAACGGGAGGAGCTGACTATCGAAGGTGGAACAATAAGCATCTCAAGTGTTTACTCACAAGGGTTATTGAACTCTCTGAGTCATGCACTTCAGACTGCAGGTGTAGATCTGTCACAGGCTAGTGTCTCAGTGCAGATTGATCTTGGTAATCGTGCAAACCGAGGGCTGTCTGCTGGAACACCTGCTTCTAAGGATCGTGAGAATCCACATTCGAGCAATCAAACGATGGCACATTTTAGGGATGCTGGCAGTGGAGATGATTCAGATCAAGCTCATAAGCGGCTGAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

335

Amino Acids

36.62

Weight (kDa)

5.88

Isoelectric Point (pI)

56.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 48 - 97 2.7e-14 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69010
fragaria_vesca FvH4_4g29230 FvH4_4g29230
malus_domestica MD13G1056100.v1.1 MD16G1055100.v1.1
prunus_persica Prupe.1G294200_v2.0.a1 Prupe.1G294200_v2.0.a1
pyrus_communis pycom13g04970 pycom16g04800
rosa_chinensis RchiOBHm_Chr4g0437281
rosa_laevigata RLG00000006450
rosa_multiflora Rmu_sc0004339.1_g000031
rosa_roxburghii Rroxscaffold_5G00378420
rosa_rugosa Rorug04G0299200
rosa_samantha Rh4AG354000 Rh4BG363900 Rh4CG378200 Rh4DG357900
rosa_wichuraiana Rw4G031050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 803, 904
AasI GACNNNNNNGTC 1 cut(s) 539
Acc36I ACCTGC 2 cut(s) 803, 904
AccB7I CCANNNNNTGG 1 cut(s) 443
AciI CCGC 3 cut(s) 169, 584, 994
AclWI GGATC 2 cut(s) 555, 915
AcuI CTGAAG 1 cut(s) 788
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 3 cut(s) 443, 620, 653
AgsI TTSAA 1 cut(s) 784
AjnI CCWGG 2 cut(s) 321, 442
AleI CACNNNNGTG 1 cut(s) 375
AluBI AGCT 2 cut(s) 727, 986
AluI AGCT 2 cut(s) 727, 986
Alw26I GTCTC 1 cut(s) 844
AlwI GGATC 2 cut(s) 555, 915
AoxI GGCC 2 cut(s) 74, 656
ApeKI GCWGC 1 cut(s) 166
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 74, 395, 656
AsuHPI GGTGA 4 cut(s) 169, 277, 426, 713
AvaII GGWCC 1 cut(s) 395
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 178
BccI CCATC 3 cut(s) 65, 623, 934
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 2 cut(s) 323, 444
BcoDI GTCTC 1 cut(s) 844
BfaI CTAG 4 cut(s) 132, 260, 525, 834
BfmI CTRYAG 1 cut(s) 810
BfuAI ACCTGC 2 cut(s) 803, 904
BglII AGATCT 2 cut(s) 211, 820
BisI GCNGC 2 cut(s) 167, 995
BlsI GCNGC 2 cut(s) 168, 996
Bme1390I CCNGG 2 cut(s) 323, 444
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 3 cut(s) 74, 395, 656
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 323, 444
BmsI GCATC 6 cut(s) 100, 257, 658, 694, 762, 946
BpiI GAAGAC 1 cut(s) 51
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 742
BsaBI GATNNNNATC 1 cut(s) 978
BsaJI CCNNGG 3 cut(s) 322, 356, 874
BsaXI ACNNNNNCTCC 4 cut(s) 23, 44, 53, 74
Bsc4I CCNNNNNNNGG 3 cut(s) 443, 620, 653
Bse1I ACTGG 4 cut(s) 280, 377, 427, 696
Bse8I GATNNNNATC 1 cut(s) 978
BseBI CCWGG 2 cut(s) 323, 444
BseDI CCNNGG 3 cut(s) 322, 356, 874
BseGI GGATG 3 cut(s) 40, 89, 961
BseJI GATNNNNATC 1 cut(s) 978
BseLI CCNNNNNNNGG 3 cut(s) 443, 620, 653
BseMII CTCAG 4 cut(s) 416, 549, 782, 855
BseNI ACTGG 4 cut(s) 280, 377, 427, 696
BseRI GAGGAG 3 cut(s) 44, 390, 737
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 3 cut(s) 354, 635, 866
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 2 cut(s) 76, 658
BsiEI CGRYCG 1 cut(s) 146
BslFI GGGAC 2 cut(s) 545, 588
BslI CCNNNNNNNGG 3 cut(s) 443, 620, 653
BsmAI GTCTC 1 cut(s) 844
BsmFI GGGAC 2 cut(s) 545, 588
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 2 cut(s) 76, 658
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 8 cut(s) 183, 211, 267, 547, 820, 853, 907, 979
Bsp19I CCATGG 1 cut(s) 356
BspACI CCGC 3 cut(s) 169, 584, 994
BspANI GGCC 2 cut(s) 76, 658
BspCNI CTCAG 4 cut(s) 415, 550, 783, 854
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 814
BspMI ACCTGC 2 cut(s) 803, 904
BspPI GGATC 2 cut(s) 555, 915
BsrI ACTGG 4 cut(s) 280, 377, 427, 696
BssECI CCNNGG 3 cut(s) 322, 356, 874
BssMI GATC 8 cut(s) 183, 211, 267, 547, 820, 853, 907, 979
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 2 cut(s) 323, 444
Bst4CI ACNGT 2 cut(s) 104, 144
BstC8I GCNNGC 2 cut(s) 639, 961
BstDEI CTNAG 6 cut(s) 114, 402, 558, 791, 841, 903
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 3 cut(s) 40, 89, 961
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 8 cut(s) 186, 214, 270, 550, 823, 856, 910, 982
BstMAI GTCTC 1 cut(s) 844
BstMBI GATC 8 cut(s) 183, 211, 267, 547, 820, 853, 907, 979
BstMCI CGRYCG 1 cut(s) 146
BstNI CCWGG 2 cut(s) 323, 444
BstSCI CCNGG 2 cut(s) 321, 442
BstSFI CTRYAG 1 cut(s) 810
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 211, 820
BstYI RGATCY 2 cut(s) 211, 820
BsuRI GGCC 2 cut(s) 76, 658
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 3 cut(s) 40, 89, 961
BtsI GCAGTG 1 cut(s) 970
BtsIMutI CAGTG 5 cut(s) 370, 703, 707, 849, 970
BveI ACCTGC 2 cut(s) 803, 904
Cac8I GCNNGC 2 cut(s) 639, 961
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 3 cut(s) 74, 395, 656
Csp6I GTAC 1 cut(s) 40
CviAII CATG 4 cut(s) 308, 357, 544, 797
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 6 cut(s) 114, 402, 558, 791, 841, 903
DpnI GATC 8 cut(s) 185, 213, 269, 549, 822, 855, 909, 981
DpnII GATC 8 cut(s) 183, 211, 267, 547, 820, 853, 907, 979
DrdI GACNNNNNNGTC 1 cut(s) 539
DseDI GACNNNNNNGTC 1 cut(s) 539
EciI GGCGGA 1 cut(s) 573
Eco130I CCWWGG 1 cut(s) 356
Eco24I GRGCYC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 788
EcoRII CCWGG 2 cut(s) 321, 442
EcoT14I CCWWGG 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 4 cut(s) 311, 360, 547, 800
FaqI GGGAC 2 cut(s) 545, 588
FatI CATG 4 cut(s) 307, 356, 543, 796
Fnu4HI GCNGC 2 cut(s) 167, 995
FokI GGATG 3 cut(s) 47, 76, 968
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 2 cut(s) 167, 995
FspBI CTAG 4 cut(s) 132, 260, 525, 834
GlaI GCGC 1 cut(s) 10
GluI GCNGC 2 cut(s) 167, 995
HaeIII GGCC 2 cut(s) 76, 658
HhaI GCGC 1 cut(s) 11
Hin1II CATG 4 cut(s) 311, 360, 547, 800
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 8 cut(s) 195, 505, 515, 533, 712, 793, 916, 974
HphI GGTGA 4 cut(s) 169, 277, 426, 713
Hpy166II GTNNAC 2 cut(s) 301, 766
Hpy188I TCNGA 8 cut(s) 384, 480, 520, 623, 667, 792, 807, 979
Hpy188III TCNNGA 3 cut(s) 26, 199, 911
Hpy8I GTNNAC 2 cut(s) 301, 766
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 4 cut(s) 87, 168, 305, 731
HpyCH4III ACNGT 2 cut(s) 104, 144
HpyCH4V TGCA 8 cut(s) 335, 491, 652, 707, 800, 812, 847, 869
HpyF3I CTNAG 6 cut(s) 114, 402, 558, 791, 841, 903
Hsp92II CATG 4 cut(s) 311, 360, 547, 800
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 8 cut(s) 183, 211, 267, 547, 820, 853, 907, 979
LmnI GCTCC 4 cut(s) 65, 163, 177, 724
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 6 cut(s) 100, 257, 658, 694, 762, 946
MaeI CTAG 4 cut(s) 132, 260, 525, 834
MaeIII GTNAC 2 cut(s) 157, 825
MalI GATC 8 cut(s) 185, 213, 269, 549, 822, 855, 909, 981
MboI GATC 8 cut(s) 183, 211, 267, 547, 820, 853, 907, 979
MboII GAAGA 2 cut(s) 56, 72
MflI RGATCY 2 cut(s) 211, 820
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 3 cut(s) 85, 429, 660
MlyI GAGTC 2 cut(s) 527, 802
MmeI TCCRAC 1 cut(s) 601
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 169
MspR9I CCNGG 2 cut(s) 323, 444
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 2 cut(s) 323, 444
NcoI CCATGG 1 cut(s) 356
NdeII GATC 8 cut(s) 183, 211, 267, 547, 820, 853, 907, 979
NlaIII CATG 4 cut(s) 311, 360, 547, 800
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 157, 825
OliI CACNNNNGTG 1 cut(s) 375
PaqCI CACCTGC 2 cut(s) 803, 904
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 871
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 6 cut(s) 195, 505, 515, 712, 916, 974
PflMI CCANNNNNTGG 1 cut(s) 443
PfoI TCCNGGA 1 cut(s) 442
PkrI GCNGC 2 cut(s) 168, 996
PleI GAGTC 2 cut(s) 527, 801
PpsI GAGTC 2 cut(s) 527, 801
Psp6I CCWGG 2 cut(s) 321, 442
PspGI CCWGG 2 cut(s) 321, 442
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 3 cut(s) 74, 395, 656
PstI CTGCAG 1 cut(s) 814
PsuI RGATCY 2 cut(s) 211, 820
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 2 cut(s) 167, 995
Sau3AI GATC 8 cut(s) 183, 211, 267, 547, 820, 853, 907, 979
Sau96I GGNCC 3 cut(s) 74, 395, 656
SchI GAGTC 2 cut(s) 527, 802
ScrFI CCNGG 2 cut(s) 323, 444
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 6 cut(s) 100, 257, 658, 694, 762, 946
SfcI CTRYAG 1 cut(s) 810
SinI GGWCC 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 757
SmoI CTYRAG 1 cut(s) 757
Sse9I AATT 3 cut(s) 85, 429, 660
SsiI CCGC 3 cut(s) 169, 584, 994
SspI AATATT 1 cut(s) 484
SspMI CTAG 4 cut(s) 132, 260, 525, 834
StyD4I CCNGG 2 cut(s) 321, 442
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 104, 144
TaqI TCGA 4 cut(s) 146, 270, 735, 926
TasI AATT 3 cut(s) 85, 429, 660
TauI GCSGC 1 cut(s) 997
TfiI GAWTC 6 cut(s) 195, 505, 515, 712, 916, 974
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 5 cut(s) 377, 703, 714, 849, 970
TseFI GTSAC 2 cut(s) 157, 825
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 2 cut(s) 157, 825
TspDTI ATGAA 3 cut(s) 78, 324, 471
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 5 cut(s) 377, 703, 714, 849, 970
Van91I CCANNNNNTGG 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 395
XspI CTAG 4 cut(s) 132, 260, 525, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.