MD13G1056100.v1.1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012004
Physical Location & Seq
Forward (+)
3916947 .. 3920474
3528 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1056100.v1.1.491

Sequence Viewer

Length: 1005 bp
ATGAGAACCGCCGCGAAAGGCAACCAGGAGGAGGATGAGTACGACGAGGAGGAGTTTGGCTCCAGGAAAGAAGGTCCTTCTTCCAATTCCAACAGCAAAGATGCCAAGAACAACGATAAGGCTAGTGCTATTCGATCGAAACATTCAGTCACAGAGCAGAGGAGGAGGAGCAAGATCAATGAGAGATTCCAGATATTGAGAGATCTAATACCCAATAGTGATCAGAAAAGAGATACAGCATCATTCCTGCTAGAGGTGATCGAGTATGTCCAGTACTTACAGGAAAAAGTCCACAAATATGAAGGTTCATACCAGGGTTGGAGTCCTGAGCCCGCAAAGTTAATGCCATGGAGAAACAGTCACTGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAGAGTGACACTGCACCAGTGTCACCATTTCCTGGAAAATTTGATGAAAATAACATCTCTATCAATCCGAACATGCTGGGAAACAGCACACCGAATCCAGTAGAATCTGACCCTAGCAGGGATGTTGCCTCCAAAATAGTGGATCGGCAGCCTGAGATAGTGAACAAGGGGATTCCTCAGCCTATGCCTCTACCAAACATTACTCCCCCGGTCAGAAGTGATGGTGTGCTTGCCCATCCCCTGCAGGGACAAATTTCTGATGCTCAATCAACTCAGTGTCCCACCACTAGTGCTAGTGATGCACTGAGCCAACACGAGGGGCTGACAGTTGAAGGAGGAACAATAAGCATCTCAAGTGTTTATTCACAAGGGTTATTAAACTCTCTGAGCCAAGTGCTGCAGACTGCAGGTGTTGATCTGTCGCAGGCTAGTATCTCAGTGCAGATTGATCTTGGGAATCGTGCGAACCGAGGGCTGTCCTCTGGAACACCTGCTTCTAAGGATAATGAGAATCCCCATTCAAGCAATCAGACGATGGCGCATTTTAGGGACGCTGGCAGTGGAGAGGACTCCGATCAAGCTCATAAGCGCCTCAAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

335

Amino Acids

36.6

Weight (kDa)

5.8

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 45 - 94 7.2e-15 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69010
fragaria_vesca FvH4_4g29230 FvH4_4g29230
malus_domestica MD13G1056100.v1.1 MD16G1055100.v1.1
prunus_persica Prupe.1G294200_v2.0.a1 Prupe.1G294200_v2.0.a1
pyrus_communis pycom13g04970 pycom16g04800
rosa_chinensis RchiOBHm_Chr4g0437281
rosa_laevigata RLG00000006450
rosa_multiflora Rmu_sc0004339.1_g000031
rosa_roxburghii Rroxscaffold_5G00378420
rosa_rugosa Rorug04G0299200
rosa_samantha Rh4AG354000 Rh4BG363900 Rh4CG378200 Rh4DG357900
rosa_wichuraiana Rw4G031050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 800, 901
Acc36I ACCTGC 2 cut(s) 800, 901
AccB7I CCANNNNNTGG 1 cut(s) 434
AccII CGCG 1 cut(s) 14
AciI CCGC 3 cut(s) 9, 12, 333
AclWI GGATC 1 cut(s) 552
AcsI RAATTY 2 cut(s) 440, 654
AfaI GTAC 2 cut(s) 41, 275
AfiI CCNNNNNNNGG 6 cut(s) 31, 253, 434, 520, 647, 718
AgsI TTSAA 2 cut(s) 734, 924
AhlI ACTAGT 1 cut(s) 689
AjnI CCWGG 4 cut(s) 24, 62, 312, 433
AleI CACNNNNGTG 1 cut(s) 366
AluBI AGCT 1 cut(s) 983
AluI AGCT 1 cut(s) 983
AlwI GGATC 1 cut(s) 552
AlwNI CAGNNNCTG 1 cut(s) 363
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 2 cut(s) 550, 799
ApoI RAATTY 2 cut(s) 440, 654
AspLEI GCGC 2 cut(s) 943, 993
AspS9I GGNCC 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 611
AsuHPI GGTGA 2 cut(s) 268, 417
AvaII GGWCC 1 cut(s) 74
AxyI CCTNAGG 1 cut(s) 393
BanII GRGCYC 1 cut(s) 333
BauI CACGAG 1 cut(s) 716
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 2 cut(s) 562, 786
BccI CCATC 3 cut(s) 617, 645, 931
BciT130I CCWGG 4 cut(s) 26, 64, 314, 435
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 1 cut(s) 611
BcuI ACTAGT 1 cut(s) 689
BfaI CTAG 6 cut(s) 123, 251, 516, 690, 696, 831
BfmI CTRYAG 3 cut(s) 644, 800, 807
BfoI RGCGCY 1 cut(s) 994
BfuAI ACCTGC 2 cut(s) 800, 901
BglII AGATCT 1 cut(s) 202
BisI GCNGC 3 cut(s) 12, 551, 800
BlsI GCNGC 3 cut(s) 13, 552, 801
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 5 cut(s) 26, 64, 314, 435, 611
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 5 cut(s) 26, 64, 314, 435, 611
BmsI GCATC 5 cut(s) 91, 248, 652, 691, 759
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpmI CTGGAG 1 cut(s) 46
Bpu10I CCTNAGC 2 cut(s) 327, 579
BpuEI CTTGAG 2 cut(s) 739, 980
BpuMI CCSGG 1 cut(s) 611
BsaJI CCNNGG 4 cut(s) 313, 347, 609, 871
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 343, 373
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 253, 434, 520, 647, 718
Bse1I ACTGG 4 cut(s) 271, 368, 419, 500
Bse21I CCTNAGG 1 cut(s) 393
BseBI CCWGG 4 cut(s) 26, 64, 314, 435
BseDI CCNNGG 4 cut(s) 313, 347, 609, 871
BseGI GGATG 3 cut(s) 40, 529, 637
BseLI CCNNNNNNNGG 6 cut(s) 31, 253, 434, 520, 647, 718
BseMII CTCAG 8 cut(s) 318, 407, 546, 593, 689, 698, 779, 852
BseNI ACTGG 4 cut(s) 271, 368, 419, 500
BseRI GAGGAG 6 cut(s) 44, 62, 65, 175, 178, 181
BseXI GCAGC 2 cut(s) 562, 786
BseYI CCCAGC 1 cut(s) 478
BsgI GTGCAG 2 cut(s) 399, 863
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 398
BsiEI CGRYCG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 611
BslFI GGGAC 3 cut(s) 663, 666, 965
BslI CCNNNNNNNGG 6 cut(s) 31, 253, 434, 520, 647, 718
BsmFI GGGAC 3 cut(s) 663, 666, 965
BsnI GGCC 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 9 cut(s) 134, 174, 202, 220, 258, 544, 817, 850, 976
Bsp19I CCATGG 1 cut(s) 347
BspACI CCGC 3 cut(s) 9, 12, 333
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 8 cut(s) 319, 406, 547, 592, 688, 699, 780, 851
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 3 cut(s) 648, 804, 811
BspMI ACCTGC 2 cut(s) 800, 901
BspPI GGATC 1 cut(s) 552
BsrI ACTGG 4 cut(s) 271, 368, 419, 500
BssECI CCNNGG 4 cut(s) 313, 347, 609, 871
BssMI GATC 9 cut(s) 134, 174, 202, 220, 258, 544, 817, 850, 976
BssSI CACGAG 1 cut(s) 716
BssT1I CCWWGG 1 cut(s) 347
Bst2BI CACGAG 1 cut(s) 716
Bst2UI CCWGG 4 cut(s) 26, 64, 314, 435
Bst4CI ACNGT 2 cut(s) 359, 730
BstC8I GCNNGC 4 cut(s) 333, 633, 828, 958
BstDEI CTNAG 9 cut(s) 327, 393, 555, 579, 675, 707, 788, 838, 900
BstDSI CCRYGG 1 cut(s) 347
BstENI CCTNNNNNAGG 1 cut(s) 251
BstF5I GGATG 3 cut(s) 40, 529, 637
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 994
BstHHI GCGC 2 cut(s) 943, 993
BstKTI GATC 9 cut(s) 137, 177, 205, 223, 261, 547, 820, 853, 979
BstMBI GATC 9 cut(s) 134, 174, 202, 220, 258, 544, 817, 850, 976
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 701
BstNI CCWGG 4 cut(s) 26, 64, 314, 435
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 5 cut(s) 24, 62, 312, 433, 609
BstSFI CTRYAG 3 cut(s) 644, 800, 807
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 562, 786
BstX2I RGATCY 1 cut(s) 202
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 1 cut(s) 202
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 1 cut(s) 398
BtgI CCRYGG 1 cut(s) 347
BtsCI GGATG 3 cut(s) 40, 529, 637
BtsI GCAGTG 2 cut(s) 411, 967
BtsIMutI CAGTG 7 cut(s) 361, 411, 426, 683, 704, 846, 967
BveI ACCTGC 2 cut(s) 800, 901
Cac8I GCNNGC 4 cut(s) 333, 633, 828, 958
CaiI CAGNNNCTG 1 cut(s) 363
CfoI GCGC 2 cut(s) 943, 993
Cfr13I GGNCC 1 cut(s) 74
CseI GACGC 1 cut(s) 962
Csp6I GTAC 2 cut(s) 40, 274
CviAII CATG 2 cut(s) 348, 475
CviQI GTAC 2 cut(s) 40, 274
DdeI CTNAG 9 cut(s) 327, 393, 555, 579, 675, 707, 788, 838, 900
DpnI GATC 9 cut(s) 136, 176, 204, 222, 260, 546, 819, 852, 978
DpnII GATC 9 cut(s) 134, 174, 202, 220, 258, 544, 817, 850, 976
Eco130I CCWWGG 1 cut(s) 347
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 74
Eco81I CCTNAGG 1 cut(s) 393
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 4 cut(s) 24, 62, 312, 433
EcoT14I CCWWGG 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 2 cut(s) 351, 478
FaiI YATR 9 cut(s) 267, 300, 310, 349, 401, 476, 587, 987, 1003
FaqI GGGAC 3 cut(s) 663, 666, 965
FatI CATG 2 cut(s) 347, 474
FauI CCCGC 1 cut(s) 340
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 12, 551, 800
FokI GGATG 3 cut(s) 47, 536, 624
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 3 cut(s) 12, 551, 800
FspBI CTAG 6 cut(s) 123, 251, 516, 690, 696, 831
GlaI GCGC 2 cut(s) 942, 992
GluI GCNGC 3 cut(s) 12, 551, 800
GsaI CCCAGC 1 cut(s) 482
GsuI CTGGAG 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 994
HaeIII GGCC 1 cut(s) 398
HapII CCGG 1 cut(s) 611
HgaI GACGC 1 cut(s) 962
HhaI GCGC 2 cut(s) 943, 993
Hin1II CATG 2 cut(s) 351, 478
Hin6I GCGC 2 cut(s) 941, 991
HinP1I GCGC 2 cut(s) 941, 991
HinfI GANTC 8 cut(s) 186, 322, 496, 506, 574, 859, 913, 971
HpaII CCGG 1 cut(s) 611
HphI GGTGA 2 cut(s) 268, 417
Hpy166II GTNNAC 2 cut(s) 292, 565
Hpy188I TCNGA 9 cut(s) 225, 375, 471, 511, 617, 661, 789, 933, 976
Hpy188III TCNNGA 4 cut(s) 190, 326, 885, 997
Hpy8I GTNNAC 2 cut(s) 292, 565
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 4 cut(s) 65, 87, 296, 728
HpyCH4III ACNGT 2 cut(s) 359, 730
HpyCH4V TGCA 6 cut(s) 416, 646, 704, 802, 809, 844
HpyF10VI GCNNNNNNNGC 1 cut(s) 701
HpyF3I CTNAG 9 cut(s) 327, 393, 555, 579, 675, 707, 788, 838, 900
Hsp92II CATG 2 cut(s) 351, 478
HspAI GCGC 2 cut(s) 941, 991
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 9 cut(s) 134, 174, 202, 220, 258, 544, 817, 850, 976
LmnI GCTCC 2 cut(s) 65, 168
Lsp1109I GCAGC 2 cut(s) 562, 786
LweI GCATC 5 cut(s) 91, 248, 652, 691, 759
MaeI CTAG 6 cut(s) 123, 251, 516, 690, 696, 831
MaeIII GTNAC 4 cut(s) 148, 359, 407, 423
MalI GATC 9 cut(s) 136, 176, 204, 222, 260, 546, 819, 852, 978
MboI GATC 9 cut(s) 134, 174, 202, 220, 258, 544, 817, 850, 976
MboII GAAGA 1 cut(s) 72
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 3 cut(s) 85, 440, 654
MlyI GAGTC 2 cut(s) 331, 965
MmeI TCCRAC 2 cut(s) 114, 299
MseI TTAA 2 cut(s) 341, 779
MslI CAYNNNNRTG 2 cut(s) 297, 366
MspI CCGG 1 cut(s) 611
MspR9I CCNGG 5 cut(s) 26, 64, 314, 435, 611
MvaI CCWGG 4 cut(s) 26, 64, 314, 435
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 701
NciI CCSGG 1 cut(s) 611
NcoI CCATGG 1 cut(s) 347
NdeII GATC 9 cut(s) 134, 174, 202, 220, 258, 544, 817, 850, 976
NlaIII CATG 2 cut(s) 351, 478
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 4 cut(s) 148, 359, 407, 423
NspI RCATGY 1 cut(s) 478
OliI CACNNNNGTG 1 cut(s) 366
PaqCI CACCTGC 2 cut(s) 800, 901
PcsI WCGNNNNNNNCGW 1 cut(s) 868
PfeI GAWTC 6 cut(s) 186, 496, 506, 574, 859, 913
PflMI CCANNNNNTGG 1 cut(s) 434
PfoI TCCNGGA 2 cut(s) 62, 433
PkrI GCNGC 3 cut(s) 13, 552, 801
Ple19I CGATCG 1 cut(s) 137
PleI GAGTC 2 cut(s) 330, 965
PpsI GAGTC 2 cut(s) 330, 965
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 4 cut(s) 24, 62, 312, 433
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 4 cut(s) 24, 62, 312, 433
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
PstI CTGCAG 3 cut(s) 648, 804, 811
PstNI CAGNNNCTG 1 cut(s) 363
PsuI RGATCY 1 cut(s) 202
PvuI CGATCG 1 cut(s) 137
RsaI GTAC 2 cut(s) 41, 275
RsaNI GTAC 2 cut(s) 40, 274
RseI CAYNNNNRTG 2 cut(s) 297, 366
SaqAI TTAA 2 cut(s) 341, 779
SatI GCNGC 3 cut(s) 12, 551, 800
Sau3AI GATC 9 cut(s) 134, 174, 202, 220, 258, 544, 817, 850, 976
Sau96I GGNCC 1 cut(s) 74
SbfI CCTGCAGG 1 cut(s) 648
ScaI AGTACT 1 cut(s) 275
SchI GAGTC 2 cut(s) 331, 965
ScrFI CCNGG 5 cut(s) 26, 64, 314, 435, 611
SdaI CCTGCAGG 1 cut(s) 648
SduI GDGCHC 1 cut(s) 333
SetI ASST 6 cut(s) 76, 258, 307, 814, 895, 985
SfaNI GCATC 5 cut(s) 91, 248, 652, 691, 759
SfcI CTRYAG 3 cut(s) 644, 800, 807
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 2 cut(s) 297, 366
SmlI CTYRAG 2 cut(s) 754, 995
SmoI CTYRAG 2 cut(s) 754, 995
SpeI ACTAGT 1 cut(s) 689
Sse8387I CCTGCAGG 1 cut(s) 648
Sse9I AATT 3 cut(s) 85, 440, 654
SsiI CCGC 3 cut(s) 9, 12, 333
SspMI CTAG 6 cut(s) 123, 251, 516, 690, 696, 831
StyD4I CCNGG 5 cut(s) 24, 62, 312, 433, 609
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 2 cut(s) 359, 730
TaqI TCGA 3 cut(s) 133, 137, 261
TasI AATT 3 cut(s) 85, 440, 654
TatI WGTACW 1 cut(s) 273
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 6 cut(s) 186, 496, 506, 574, 859, 913
Tru1I TTAA 2 cut(s) 341, 779
Tru9I TTAA 2 cut(s) 341, 779
TscAI CASTG 7 cut(s) 368, 418, 426, 683, 711, 846, 967
TseFI GTSAC 4 cut(s) 148, 359, 407, 423
TseI GCWGC 2 cut(s) 550, 799
Tsp45I GTSAC 4 cut(s) 148, 359, 407, 423
TspDTI ATGAA 3 cut(s) 297, 315, 462
TspRI CASTG 7 cut(s) 368, 418, 426, 683, 711, 846, 967
Van91I CCANNNNNTGG 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 74
XagI CCTNNNNNAGG 1 cut(s) 251
XapI RAATTY 2 cut(s) 440, 654
XceI RCATGY 1 cut(s) 478
XspI CTAG 6 cut(s) 123, 251, 516, 690, 696, 831
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.