Rorug04G0299200

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012004
Physical Location & Seq
Forward (+)
47386519 .. 47388571
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0299200.1

Sequence Viewer

Length: 945 bp
ATGGCCTTAGAAAAAGATGGAATTTTAAAATCATTTTCAGATTCACCGCCAACTCATTACACTGTAAAAATAGAGTTATTTTCGATGATAACTGAACTTTTTTCAGAGGATGGATATGAATCATCACAATTTGAAACCGGAGGATACAAATGGAAACTGGTGTTGTACCCAAATGGAAACATGAGGAGGAATGTGGGAGACCACATCTCTATCTACTTGGTAATAGCTGGAACAGATTCACTTCCAACTGGTTGGGAGGTATATGTTGATTTCAGATTGTTTTTGCTCGATCAGAATAAGAAAGCCTACTCGGTTTTTGAAGATGCTTTTACAAAGCAAAAGTGCTTTAATGGAGCTATGCTTGATGCGGCTGGTTTTGATAAACTTATCCCCGTTAAAGATTTTACTGATGTTTCCAATGGATATCTTATTGATGATACATGCGTGTATGGAGCTGAGGTCTTTGTTTGTAAAGAAAGGAGAACAGGGAAAGGAGAGTGTCTATCAAGGATAAGAAATGCCTCCGCGTACAAGCATGTTTGGAAGATTGATAATTTTTCAGAATTGGACGCTGAATCCTATTCATCGGAACCCTTTAATGCTGGAGGCTATGAATGGAAGATAAAGCTCTATCCCAAGGGAACCGGTGATGGAAAGGATAGTCATCTTTCTCTGTTTTTCATATTGGCAAATCCTGAGACCCTTCCTCCTGGCTCTAGTATATTTGCAGATTATACATCGCGCATCCTAGATCAGATTCATGACAGGCATCACTCTAAAAGGGCAACTAATGGCAGGATCTTCAGTGCCTTGCATCCGAGTTGGGGTTACGATAAATTCATTGCACTGGAGATGTTCAGTCCGGCAGACAAGGGTTTTTTGATGAATGACACTTGCATAGTGGAGGTAGAGGTCACTGTCCGTGGAATTACTGGAGTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

314

Amino Acids

35.41

Weight (kDa)

5.43

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 19 - 154 2.3e-33 MATH domain
MATH PF00917 35 - 156 1.4e-11 MATH domain
MATH_2 PF22486 178 - 305 3.5e-36 MATH domain
MATH PF00917 183 - 307 5.5e-13 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69010
fragaria_vesca FvH4_4g29230 FvH4_4g29230
malus_domestica MD13G1056100.v1.1 MD16G1055100.v1.1
prunus_persica Prupe.1G294200_v2.0.a1 Prupe.1G294200_v2.0.a1
pyrus_communis pycom13g04970 pycom16g04800
rosa_chinensis RchiOBHm_Chr4g0437281
rosa_laevigata RLG00000006450
rosa_multiflora Rmu_sc0004339.1_g000031
rosa_roxburghii Rroxscaffold_5G00378420
rosa_rugosa Rorug04G0299200
rosa_samantha Rh4AG354000 Rh4BG363900 Rh4CG378200 Rh4DG357900
rosa_wichuraiana Rw4G031050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 527, 742
AciI CCGC 3 cut(s) 47, 368, 525
AclWI GGATC 1 cut(s) 806
AcsI RAATTY 2 cut(s) 21, 836
AcuI CTGAAG 1 cut(s) 787
AfaI GTAC 2 cut(s) 167, 530
AfiI CCNNNNNNNGG 1 cut(s) 824
AgeI ACCGGT 1 cut(s) 644
AgsI TTSAA 2 cut(s) 134, 320
AjnI CCWGG 1 cut(s) 709
AluBI AGCT 4 cut(s) 227, 356, 455, 628
AluI AGCT 4 cut(s) 227, 356, 455, 628
Alw26I GTCTC 2 cut(s) 192, 692
AlwI GGATC 1 cut(s) 806
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 21, 836
AsiGI ACCGGT 1 cut(s) 644
Asp700I GAANNNNTTC 1 cut(s) 235
AspLEI GCGC 1 cut(s) 744
AsuHPI GGTGA 2 cut(s) 36, 659
BaeI ACNNNNGTAYC 2 cut(s) 429, 462
BbvCI CCTCAGC 1 cut(s) 456
BccI CCATC 3 cut(s) 11, 104, 644
BciT130I CCWGG 1 cut(s) 711
BciVI GTATCC 1 cut(s) 137
BcoDI GTCTC 2 cut(s) 192, 692
BfaI CTAG 2 cut(s) 717, 749
BfmI CTRYAG 1 cut(s) 941
BfuI GTATCC 1 cut(s) 137
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
Bme1390I CCNGG 1 cut(s) 711
BmiI GGNNCC 2 cut(s) 591, 643
BmrFI CCNGG 1 cut(s) 711
BmsI GCATC 5 cut(s) 313, 355, 753, 778, 823
BpmI CTGGAG 2 cut(s) 624, 869
Bpu10I CCTNAGC 1 cut(s) 456
BsaBI GATNNNNATC 2 cut(s) 118, 663
BsaI GGTCTC 2 cut(s) 192, 692
BsaJI CCNNGG 2 cut(s) 636, 922
BsaWI WCCGGW 2 cut(s) 137, 644
BsaXI ACNNNNNCTCC 4 cut(s) 444, 474, 691, 721
Bsc4I CCNNNNNNNGG 1 cut(s) 824
Bse118I RCCGGY 1 cut(s) 644
Bse1I ACTGG 4 cut(s) 162, 253, 852, 937
Bse3DI GCAATG 1 cut(s) 840
Bse8I GATNNNNATC 2 cut(s) 118, 663
BseBI CCWGG 1 cut(s) 711
BseDI CCNNGG 2 cut(s) 636, 922
BseGI GGATG 3 cut(s) 115, 744, 814
BseJI GATNNNNATC 2 cut(s) 118, 663
BseLI CCNNNNNNNGG 1 cut(s) 824
BseMI GCAATG 1 cut(s) 840
BseMII CTCAG 2 cut(s) 447, 687
BseNI ACTGG 4 cut(s) 162, 253, 852, 937
BseRI GAGGAG 1 cut(s) 199
Bsh1236I CGCG 2 cut(s) 527, 742
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 644
BsiSI CCGG 3 cut(s) 138, 645, 863
BslI CCNNNNNNNGG 1 cut(s) 824
BsmAI GTCTC 2 cut(s) 192, 692
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 192, 692
Bsp143I GATC 3 cut(s) 289, 751, 798
BspACI CCGC 3 cut(s) 47, 368, 525
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 448, 688
BspFNI CGCG 2 cut(s) 527, 742
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 2 cut(s) 591, 643
BspPI GGATC 1 cut(s) 806
BspTNI GGTCTC 2 cut(s) 192, 692
BsrDI GCAATG 1 cut(s) 840
BsrFI RCCGGY 1 cut(s) 644
BsrI ACTGG 4 cut(s) 162, 253, 852, 937
BssAI RCCGGY 1 cut(s) 644
BssECI CCNNGG 2 cut(s) 636, 922
BssMI GATC 3 cut(s) 289, 751, 798
BssT1I CCWWGG 1 cut(s) 636
Bst2UI CCWGG 1 cut(s) 711
Bst4CI ACNGT 2 cut(s) 64, 919
BstDEI CTNAG 3 cut(s) 7, 456, 696
BstDSI CCRYGG 1 cut(s) 922
BstF5I GGATG 3 cut(s) 115, 744, 814
BstFNI CGCG 2 cut(s) 527, 742
BstHHI GCGC 1 cut(s) 744
BstKTI GATC 3 cut(s) 292, 754, 801
BstMAI GTCTC 2 cut(s) 192, 692
BstMBI GATC 3 cut(s) 289, 751, 798
BstNI CCWGG 1 cut(s) 711
BstNSI RCATGY 2 cut(s) 444, 539
BstSCI CCNGG 1 cut(s) 709
BstSFI CTRYAG 1 cut(s) 941
BstUI CGCG 2 cut(s) 527, 742
BstX2I RGATCY 1 cut(s) 798
BstXI CCANNNNNNTGG 1 cut(s) 252
BstYI RGATCY 1 cut(s) 798
BsuI GTATCC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 922
BtgZI GCGATG 1 cut(s) 723
BtsCI GGATG 3 cut(s) 115, 744, 814
BtsIMutI CAGTG 4 cut(s) 60, 811, 845, 915
CciI TCATGA 1 cut(s) 760
CfoI GCGC 1 cut(s) 744
Cfr10I RCCGGY 1 cut(s) 644
CseI GACGC 1 cut(s) 578
Csp6I GTAC 2 cut(s) 166, 529
CspAI ACCGGT 1 cut(s) 644
CviAII CATG 4 cut(s) 181, 441, 536, 761
CviJI RGCY 9 cut(s) 5, 227, 305, 356, 371, 455, 609, 628, 714
CviKI_1 RGCY 9 cut(s) 5, 227, 305, 356, 371, 455, 609, 628, 714
CviQI GTAC 2 cut(s) 166, 529
DdeI CTNAG 3 cut(s) 7, 456, 696
DpnI GATC 3 cut(s) 291, 753, 800
DpnII GATC 3 cut(s) 289, 751, 798
DraI TTTAAA 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 636
Eco31I GGTCTC 2 cut(s) 192, 692
Eco32I GATATC 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 787
EcoRII CCWGG 1 cut(s) 709
EcoRV GATATC 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 4 cut(s) 184, 444, 539, 764
FatI CATG 4 cut(s) 180, 440, 535, 760
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 3 cut(s) 122, 731, 801
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 2 cut(s) 717, 749
GlaI GCGC 1 cut(s) 743
GluI GCNGC 1 cut(s) 369
GsuI CTGGAG 2 cut(s) 624, 869
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 138, 645, 863
HgaI GACGC 1 cut(s) 578
HhaI GCGC 1 cut(s) 744
Hin1II CATG 4 cut(s) 184, 444, 539, 764
Hin6I GCGC 1 cut(s) 742
HinP1I GCGC 1 cut(s) 742
HinfI GANTC 5 cut(s) 41, 119, 236, 575, 757
HpaII CCGG 3 cut(s) 138, 645, 863
HphI GGTGA 2 cut(s) 36, 659
Hpy188I TCNGA 8 cut(s) 40, 106, 275, 294, 562, 589, 756, 819
Hpy188III TCNNGA 2 cut(s) 695, 761
HpyAV CCTTC 1 cut(s) 713
HpyCH4III ACNGT 2 cut(s) 64, 919
HpyCH4V TGCA 4 cut(s) 728, 814, 845, 897
HpyF3I CTNAG 3 cut(s) 7, 456, 696
Hsp92II CATG 4 cut(s) 184, 444, 539, 764
HspAI GCGC 1 cut(s) 742
Kzo9I GATC 3 cut(s) 289, 751, 798
LmnI GCTCC 2 cut(s) 353, 452
LweI GCATC 5 cut(s) 313, 355, 753, 778, 823
MaeI CTAG 2 cut(s) 717, 749
MaeIII GTNAC 2 cut(s) 827, 913
MalI GATC 3 cut(s) 291, 753, 800
MboI GATC 3 cut(s) 289, 751, 798
MboII GAAGA 4 cut(s) 332, 556, 631, 793
MflI RGATCY 1 cut(s) 798
MluCI AATT 6 cut(s) 21, 128, 553, 563, 836, 927
MmeI TCCRAC 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 4 cut(s) 26, 348, 396, 597
MspI CCGG 3 cut(s) 138, 645, 863
MspR9I CCNGG 1 cut(s) 711
MvaI CCWGG 1 cut(s) 711
MvnI CGCG 2 cut(s) 527, 742
NdeII GATC 3 cut(s) 289, 751, 798
NlaIII CATG 4 cut(s) 184, 444, 539, 764
NlaIV GGNNCC 2 cut(s) 591, 643
NmuCI GTSAC 1 cut(s) 913
NspI RCATGY 2 cut(s) 444, 539
PagI TCATGA 1 cut(s) 760
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 5 cut(s) 41, 119, 236, 575, 757
PinAI ACCGGT 1 cut(s) 644
PkrI GCNGC 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 709
PspGI CCWGG 1 cut(s) 709
PspN4I GGNNCC 2 cut(s) 591, 643
PsuI RGATCY 1 cut(s) 798
RsaI GTAC 2 cut(s) 167, 530
RsaNI GTAC 2 cut(s) 166, 529
SaqAI TTAA 4 cut(s) 26, 348, 396, 597
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 3 cut(s) 289, 751, 798
ScrFI CCNGG 1 cut(s) 711
SetI ASST 8 cut(s) 229, 261, 358, 457, 462, 630, 909, 915
SfaNI GCATC 5 cut(s) 313, 355, 753, 778, 823
SfcI CTRYAG 1 cut(s) 941
Sse9I AATT 6 cut(s) 21, 128, 553, 563, 836, 927
SsiI CCGC 3 cut(s) 47, 368, 525
SspMI CTAG 2 cut(s) 717, 749
StyD4I CCNGG 1 cut(s) 709
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 2 cut(s) 64, 919
TaqI TCGA 2 cut(s) 83, 288
TasI AATT 6 cut(s) 21, 128, 553, 563, 836, 927
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 5 cut(s) 41, 119, 236, 575, 757
Tru1I TTAA 4 cut(s) 26, 348, 396, 597
Tru9I TTAA 4 cut(s) 26, 348, 396, 597
TscAI CASTG 4 cut(s) 67, 811, 852, 922
TseFI GTSAC 1 cut(s) 913
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 7 cut(s) 132, 573, 627, 670, 749, 829, 899
TspGWI ACGGA 1 cut(s) 911
TspRI CASTG 4 cut(s) 67, 811, 852, 922
XapI RAATTY 2 cut(s) 21, 836
XceI RCATGY 2 cut(s) 444, 539
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 2 cut(s) 717, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.