FvH4_4g29230

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012004
Physical Location & Seq
Forward (+)
29449186 .. 29451978
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29230.t2

Sequence Viewer

Length: 996 bp
ATGAGAAGCGCAGGGAAAGGTAGCCAGGATGAGGATGAGTACGAAGACGACGACTTTGGCTCCAAGAAAGATGGCCCTTCTTCCAATTCATCCAATCCCAATAGTAAAGATGCTAAGAGCAATGATAAGGCTAGTGCTATAAGATCGAAGCATTCGGTGACGGAGCAGCGGAGAAGGAGCAAGATCAATGAGAGATTCCAGATATTGAGAGATCTAATACCCCATAGTGAGCAAAAACGAGATACGGCATCGTTCTTGCTGGAGGTGATCGAGTATGTGCAGTATTTACAGGAAAGGGTAAACAAGCATGAAGGTTCGTGCCAGGGGTGGAGTGCAGAGCCGACAAAGTTAATGCCATGGAGAAATAGCCACTGGCGTGTTCAAAGTTTTGCTGGTCATCCTCAGCCGATAAAGAATGATATTGGTGTAATTTCACCATTTCCTGGAAAGTTTGACGAAAATAACATCTCTATTAACAGCACACAGAATCCAGTAGAATCTGAACCTAGCAGGGATGTTGCATCTAAAATCATGGATCAGCAAACTGAGATAGTGAATAAGGGACTTCCTCCACCTATGCATCTGCCAGAAAATCTGCTTCCCGCTGTCAGAAGTGATGGTATGCTTGCCCATCCTCTGCACGGACCAATTTCTGATGCTCAGTCAACTCAATGTCCCACTACCAGTGGTGATGCACTGAATCAACAGGAGCATCTGACTATCGAAGGTGGAACAATAAGCATATCAAGTGTTTACTCACAAGGGTTATTGAACTCTCTGAGTCATGCACTGCAGACTGCAGGTGTAGATCTGTCACAGGCTAGCGTCTCAGTGCAGATTGATCTTGGTAATCGCACAAACCGAGGGCTGTCTGCTGGAACACCTGCTTCTAAGGATCATGAGAATCCCCATTCGAGCAATCAAACAATGGCACATTTTAGGGATGCTGGCAGTGGAGATGATTCAGATCAAGCTCATAAGCGGCTGAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

332

Amino Acids

36.3

Weight (kDa)

5.95

Isoelectric Point (pI)

53.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 48 - 97 2.3e-14 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69010
fragaria_vesca FvH4_4g29230 FvH4_4g29230
malus_domestica MD13G1056100.v1.1 MD16G1055100.v1.1
prunus_persica Prupe.1G294200_v2.0.a1 Prupe.1G294200_v2.0.a1
pyrus_communis pycom13g04970 pycom16g04800
rosa_chinensis RchiOBHm_Chr4g0437281
rosa_laevigata RLG00000006450
rosa_multiflora Rmu_sc0004339.1_g000031
rosa_roxburghii Rroxscaffold_5G00378420
rosa_rugosa Rorug04G0299200
rosa_samantha Rh4AG354000 Rh4BG363900 Rh4CG378200 Rh4DG357900
rosa_wichuraiana Rw4G031050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 791, 892
Acc36I ACCTGC 2 cut(s) 791, 892
AccB7I CCANNNNNTGG 1 cut(s) 443
AciI CCGC 3 cut(s) 169, 603, 982
AclWI GGATC 2 cut(s) 543, 903
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 3 cut(s) 31, 443, 641
AgsI TTSAA 2 cut(s) 383, 772
AjnI CCWGG 3 cut(s) 24, 321, 442
AleI CACNNNNGTG 1 cut(s) 375
AluBI AGCT 1 cut(s) 974
AluI AGCT 1 cut(s) 974
Alw26I GTCTC 1 cut(s) 832
AlwI GGATC 2 cut(s) 543, 903
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 166
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 74, 644
AsuHPI GGTGA 4 cut(s) 169, 277, 426, 701
AsuNHI GCTAGC 1 cut(s) 821
AvaII GGWCC 1 cut(s) 644
BbsI GAAGAC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 178
BccI CCATC 3 cut(s) 65, 611, 639
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 3 cut(s) 26, 323, 444
BcoDI GTCTC 1 cut(s) 832
BfaI CTAG 3 cut(s) 132, 507, 822
BfmI CTRYAG 2 cut(s) 791, 798
BfuAI ACCTGC 2 cut(s) 791, 892
BglII AGATCT 2 cut(s) 211, 808
BisI GCNGC 2 cut(s) 167, 983
BlsI GCNGC 2 cut(s) 168, 984
Bme1390I CCNGG 3 cut(s) 26, 323, 444
Bme18I GGWCC 1 cut(s) 644
BmgT120I GGNCC 2 cut(s) 74, 644
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 3 cut(s) 26, 323, 444
BmsI GCATC 8 cut(s) 100, 257, 530, 589, 646, 682, 721, 934
BmtI GCTAGC 1 cut(s) 825
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 402
BsaBI GATNNNNATC 1 cut(s) 966
BsaJI CCNNGG 3 cut(s) 322, 356, 862
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 443, 641
Bse1I ACTGG 3 cut(s) 377, 491, 684
Bse3DI GCAATG 1 cut(s) 127
Bse8I GATNNNNATC 1 cut(s) 966
BseBI CCWGG 3 cut(s) 26, 323, 444
BseDI CCNNGG 3 cut(s) 322, 356, 862
BseGI GGATG 7 cut(s) 34, 40, 89, 397, 520, 631, 949
BseJI GATNNNNATC 1 cut(s) 966
BseLI CCNNNNNNNGG 3 cut(s) 31, 443, 641
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 5 cut(s) 416, 537, 674, 770, 843
BseNI ACTGG 3 cut(s) 377, 491, 684
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 4 cut(s) 299, 354, 623, 854
BshFI GGCC 1 cut(s) 75
BslFI GGGAC 2 cut(s) 576, 660
BslI CCNNNNNNNGG 3 cut(s) 31, 443, 641
BsmAI GTCTC 1 cut(s) 832
BsmBI CGTCTC 1 cut(s) 832
BsmFI GGGAC 2 cut(s) 576, 660
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 1 cut(s) 75
Bsp143I GATC 9 cut(s) 143, 183, 211, 267, 535, 808, 841, 895, 967
Bsp19I CCATGG 1 cut(s) 356
BspACI CCGC 3 cut(s) 169, 603, 982
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 5 cut(s) 415, 538, 673, 771, 842
BspHI TCATGA 1 cut(s) 898
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 2 cut(s) 795, 802
BspMI ACCTGC 2 cut(s) 791, 892
BspOI GCTAGC 1 cut(s) 825
BspPI GGATC 2 cut(s) 543, 903
BsrDI GCAATG 1 cut(s) 127
BsrI ACTGG 3 cut(s) 377, 491, 684
BssECI CCNNGG 3 cut(s) 322, 356, 862
BssMI GATC 9 cut(s) 143, 183, 211, 267, 535, 808, 841, 895, 967
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 3 cut(s) 26, 323, 444
BstC8I GCNNGC 3 cut(s) 627, 823, 949
BstDEI CTNAG 7 cut(s) 114, 402, 546, 660, 779, 829, 891
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 7 cut(s) 34, 40, 89, 397, 520, 631, 949
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 9 cut(s) 146, 186, 214, 270, 538, 811, 844, 898, 970
BstMAI GTCTC 1 cut(s) 832
BstMBI GATC 9 cut(s) 143, 183, 211, 267, 535, 808, 841, 895, 967
BstNI CCWGG 3 cut(s) 26, 323, 444
BstSCI CCNGG 3 cut(s) 24, 321, 442
BstSFI CTRYAG 2 cut(s) 791, 798
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 211, 808
BstYI RGATCY 2 cut(s) 211, 808
BsuRI GGCC 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 7 cut(s) 34, 40, 89, 397, 520, 631, 949
BtsI GCAGTG 2 cut(s) 788, 958
BtsIMutI CAGTG 6 cut(s) 370, 691, 695, 788, 837, 958
BveI ACCTGC 2 cut(s) 791, 892
Cac8I GCNNGC 3 cut(s) 627, 823, 949
CciI TCATGA 1 cut(s) 898
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 74, 644
CseI GACGC 1 cut(s) 814
Csp6I GTAC 1 cut(s) 40
CviAII CATG 5 cut(s) 308, 357, 532, 785, 899
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 7 cut(s) 114, 402, 546, 660, 779, 829, 891
DpnI GATC 9 cut(s) 145, 185, 213, 269, 537, 810, 843, 897, 969
DpnII GATC 9 cut(s) 143, 183, 211, 267, 535, 808, 841, 895, 967
Eco130I CCWWGG 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 644
EcoRII CCWGG 3 cut(s) 24, 321, 442
EcoT14I CCWWGG 1 cut(s) 356
EcoT22I ATGCAT 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 356
Esp3I CGTCTC 1 cut(s) 832
FaeI CATG 5 cut(s) 311, 360, 535, 788, 902
FaqI GGGAC 2 cut(s) 576, 660
FatI CATG 5 cut(s) 307, 356, 531, 784, 898
FauI CCCGC 1 cut(s) 610
Fnu4HI GCNGC 2 cut(s) 167, 983
FokI GGATG 7 cut(s) 41, 47, 76, 384, 527, 618, 956
Fsp4HI GCNGC 2 cut(s) 167, 983
FspBI CTAG 3 cut(s) 132, 507, 822
GlaI GCGC 1 cut(s) 10
GluI GCNGC 2 cut(s) 167, 983
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 75
HgaI GACGC 1 cut(s) 814
HhaI GCGC 1 cut(s) 11
Hin1II CATG 5 cut(s) 311, 360, 535, 788, 902
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 666
HindII GTYRAC 1 cut(s) 666
HinfI GANTC 7 cut(s) 195, 487, 497, 700, 781, 904, 962
HphI GGTGA 4 cut(s) 169, 277, 426, 701
Hpy166II GTNNAC 3 cut(s) 301, 666, 754
Hpy188I TCNGA 6 cut(s) 502, 611, 655, 717, 780, 967
Hpy188III TCNNGA 2 cut(s) 199, 899
Hpy8I GTNNAC 3 cut(s) 301, 666, 754
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 4 cut(s) 87, 168, 305, 719
HpyF3I CTNAG 7 cut(s) 114, 402, 546, 660, 779, 829, 891
Hsp92II CATG 5 cut(s) 311, 360, 535, 788, 902
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 9 cut(s) 143, 183, 211, 267, 535, 808, 841, 895, 967
LmnI GCTCC 4 cut(s) 65, 163, 177, 709
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 8 cut(s) 100, 257, 530, 589, 646, 682, 721, 934
MaeI CTAG 3 cut(s) 132, 507, 822
MaeIII GTNAC 2 cut(s) 157, 813
MalI GATC 9 cut(s) 145, 185, 213, 269, 537, 810, 843, 897, 969
MboI GATC 9 cut(s) 143, 183, 211, 267, 535, 808, 841, 895, 967
MboII GAAGA 2 cut(s) 56, 72
MflI RGATCY 2 cut(s) 211, 808
MluCI AATT 3 cut(s) 85, 429, 648
MlyI GAGTC 1 cut(s) 790
MnlI CCTC 6 cut(s) 25, 256, 411, 579, 645, 857
Mph1103I ATGCAT 1 cut(s) 582
MseI TTAA 2 cut(s) 350, 474
MslI CAYNNNNRTG 1 cut(s) 375
MspA1I CMGCKG 2 cut(s) 169, 605
MspR9I CCNGG 3 cut(s) 26, 323, 444
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 3 cut(s) 26, 323, 444
NcoI CCATGG 1 cut(s) 356
NdeII GATC 9 cut(s) 143, 183, 211, 267, 535, 808, 841, 895, 967
NheI GCTAGC 1 cut(s) 821
NlaIII CATG 5 cut(s) 311, 360, 535, 788, 902
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 157, 813
NsiI ATGCAT 1 cut(s) 582
OliI CACNNNNGTG 1 cut(s) 375
PagI TCATGA 1 cut(s) 898
PaqCI CACCTGC 2 cut(s) 791, 892
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 859
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 6 cut(s) 195, 487, 497, 700, 904, 962
PflMI CCANNNNNTGG 1 cut(s) 443
PfoI TCCNGGA 1 cut(s) 442
PkrI GCNGC 2 cut(s) 168, 984
PleI GAGTC 1 cut(s) 789
PpsI GAGTC 1 cut(s) 789
Psp6I CCWGG 3 cut(s) 24, 321, 442
PspGI CCWGG 3 cut(s) 24, 321, 442
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 2 cut(s) 74, 644
PstI CTGCAG 2 cut(s) 795, 802
PsuI RGATCY 2 cut(s) 211, 808
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 2 cut(s) 350, 474
SatI GCNGC 2 cut(s) 167, 983
Sau3AI GATC 9 cut(s) 143, 183, 211, 267, 535, 808, 841, 895, 967
Sau96I GGNCC 2 cut(s) 74, 644
SchI GAGTC 1 cut(s) 790
ScrFI CCNGG 3 cut(s) 26, 323, 444
SetI ASST 9 cut(s) 22, 267, 316, 508, 577, 730, 805, 886, 976
SfaNI GCATC 8 cut(s) 100, 257, 530, 589, 646, 682, 721, 934
SfcI CTRYAG 2 cut(s) 791, 798
SinI GGWCC 1 cut(s) 644
SmiMI CAYNNNNRTG 1 cut(s) 375
Sse9I AATT 3 cut(s) 85, 429, 648
SsiI CCGC 3 cut(s) 169, 603, 982
SspMI CTAG 3 cut(s) 132, 507, 822
StyD4I CCNGG 3 cut(s) 24, 321, 442
StyI CCWWGG 1 cut(s) 356
TaqI TCGA 4 cut(s) 146, 270, 723, 914
TasI AATT 3 cut(s) 85, 429, 648
TauI GCSGC 1 cut(s) 985
TfiI GAWTC 6 cut(s) 195, 487, 497, 700, 904, 962
Tru1I TTAA 2 cut(s) 350, 474
Tru9I TTAA 2 cut(s) 350, 474
TscAI CASTG 6 cut(s) 377, 691, 702, 795, 837, 958
TseFI GTSAC 2 cut(s) 157, 813
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 2 cut(s) 157, 813
TspDTI ATGAA 2 cut(s) 78, 324
TspGWI ACGGA 2 cut(s) 176, 657
TspRI CASTG 6 cut(s) 377, 691, 702, 795, 837, 958
Van91I CCANNNNNTGG 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 644
XspI CTAG 3 cut(s) 132, 507, 822
Zsp2I ATGCAT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.