Rw4G031050

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0012004
Physical Location & Seq
Forward (+)
57932849 .. 57935149
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G031050.1

Sequence Viewer

Length: 996 bp
ATGAGAAGCGCAGGGAAAGGTAGTCAGGAGGAGGATGAGTACGAAGACGAAGACTTTGGCTCCAAGAAAGATGGGCCTTCTTCCAATTCATCCAATCCCAACAGTAAAGATGCTAAGAGCAACGATAAGGCTAGTGCTATACGGTCGAAGCATTCGGTGACGGAGCAGCGGAGAAGGAGCAAGATCAATGAGAGATTCCAGATATTGAGAGATCTAATACCCCATAGTGAGCAAAAGCGAGATACGGTGATCGAATATGTCCAGTATTTACAGGAAAGGGTCAACAAACATGAAGGTTCGTGCCAGGGGTGGAGTGCAGAGCCCACAAAGTTAATGCCATGGAGAAATAGCCACTGGCGTGTTCAGAGTTTTGTTGGTCCTCCTCAGCCGATAAAGAATGACACTGGTGTAATTTCACCATTTCCTGGAAAGTTTGATGAAAATAACATCTCTATTACTCCGAATATTCTTGCAAACAGCACAAAGAATCCCGTAGAATCTGAACCTAGCAGGGACGTTGCCTCTAAAGTCGTGGATCAGCCACCTGAGATAGTGAATAAGGGACTTCCTCCGCCTATGCCTCTGCCAGAAAATCTGCTTCCCCCTGTCAGAAATGATGGTATACTTGCCCGTCCTCTGCACGGACCAATTTCTGATGCTCAAGCAACTCAATGCCCCACCACCAGTGGTGATGCACTGAATCAACGGGAGGAGCTGACTATCGAAGGTGGAACAATAAGCATCTCAAGTGTTTACTCACAAGGGTTATTGAACTCTCTGAGTCATGCACTTCAGACTGCAGGTGTAGATCTGTCACAGGCTAGTGTCTCAGTACAGATTGATCTTGGTAATCGCGCAAACCGAGGGCTGTCTGCTGGAACACCTGCTTCTAAGGATCATGAGAATCCACATTCGAGCAATCAAACGATGGCACATTTTAGGGATGCTGGCAGTGGAGATGATTCAGATCAAGCTCATAAGCGGCTGAAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

331

Amino Acids

36.16

Weight (kDa)

6.08

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 48 - 80 3.4e-08 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69010
fragaria_vesca FvH4_4g29230 FvH4_4g29230
malus_domestica MD13G1056100.v1.1 MD16G1055100.v1.1
prunus_persica Prupe.1G294200_v2.0.a1 Prupe.1G294200_v2.0.a1
pyrus_communis pycom13g04970 pycom16g04800
rosa_chinensis RchiOBHm_Chr4g0437281
rosa_laevigata RLG00000006450
rosa_multiflora Rmu_sc0004339.1_g000031
rosa_roxburghii Rroxscaffold_5G00378420
rosa_rugosa Rorug04G0299200
rosa_samantha Rh4AG354000 Rh4BG363900 Rh4CG378200 Rh4DG357900
rosa_wichuraiana Rw4G031050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 791, 892
Acc36I ACCTGC 2 cut(s) 791, 892
AccB7I CCANNNNNTGG 1 cut(s) 425
AccI GTMKAC 1 cut(s) 622
AccII CGCG 1 cut(s) 855
AciI CCGC 3 cut(s) 169, 572, 982
AclWI GGATC 2 cut(s) 543, 903
AcuI CTGAAG 1 cut(s) 776
AfaI GTAC 2 cut(s) 41, 834
AfiI CCNNNNNNNGG 2 cut(s) 425, 641
AgsI TTSAA 1 cut(s) 772
AjnI CCWGG 2 cut(s) 303, 424
AleI CACNNNNGTG 1 cut(s) 357
AluBI AGCT 2 cut(s) 715, 974
AluI AGCT 2 cut(s) 715, 974
Alw26I GTCTC 1 cut(s) 832
AlwI GGATC 2 cut(s) 543, 903
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 166
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AspLEI GCGC 2 cut(s) 11, 857
AspS9I GGNCC 3 cut(s) 74, 377, 644
AsuHPI GGTGA 4 cut(s) 169, 259, 408, 701
AvaII GGWCC 2 cut(s) 377, 644
BanII GRGCYC 1 cut(s) 324
BbsI GAAGAC 2 cut(s) 51, 57
BbvCI CCTCAGC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 178
BccI CCATC 3 cut(s) 65, 611, 922
BciT130I CCWGG 2 cut(s) 305, 426
BcoDI GTCTC 1 cut(s) 832
BfaI CTAG 3 cut(s) 132, 507, 822
BfmI CTRYAG 1 cut(s) 798
BfuAI ACCTGC 2 cut(s) 791, 892
BglII AGATCT 2 cut(s) 211, 808
BisI GCNGC 2 cut(s) 167, 983
BlsI GCNGC 2 cut(s) 168, 984
Bme1390I CCNGG 2 cut(s) 305, 426
Bme18I GGWCC 2 cut(s) 377, 644
BmgT120I GGNCC 3 cut(s) 74, 377, 644
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 305, 426
BmsI GCATC 5 cut(s) 100, 646, 682, 750, 934
BpiI GAAGAC 2 cut(s) 51, 57
Bpu10I CCTNAGC 1 cut(s) 384
BpuEI CTTGAG 2 cut(s) 645, 730
BsaBI GATNNNNATC 1 cut(s) 966
BsaJI CCNNGG 3 cut(s) 304, 338, 862
BsaXI ACNNNNNCTCC 4 cut(s) 23, 44, 53, 74
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 641
Bse1I ACTGG 4 cut(s) 262, 359, 409, 684
Bse8I GATNNNNATC 1 cut(s) 966
BseBI CCWGG 2 cut(s) 305, 426
BseDI CCNNGG 3 cut(s) 304, 338, 862
BseGI GGATG 3 cut(s) 40, 89, 949
BseJI GATNNNNATC 1 cut(s) 966
BseLI CCNNNNNNNGG 2 cut(s) 425, 641
BseMII CTCAG 4 cut(s) 398, 537, 770, 843
BseNI ACTGG 4 cut(s) 262, 359, 409, 684
BseRI GAGGAG 3 cut(s) 44, 372, 725
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 2 cut(s) 336, 623
Bsh1236I CGCG 1 cut(s) 855
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 1 cut(s) 76
BsiEI CGRYCG 1 cut(s) 146
BslFI GGGAC 2 cut(s) 527, 576
BslI CCNNNNNNNGG 2 cut(s) 425, 641
BsmAI GTCTC 1 cut(s) 832
BsmFI GGGAC 2 cut(s) 527, 576
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 8 cut(s) 183, 211, 249, 535, 808, 841, 895, 967
Bsp19I CCATGG 1 cut(s) 338
BspACI CCGC 3 cut(s) 169, 572, 982
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 4 cut(s) 397, 538, 771, 842
BspFNI CGCG 1 cut(s) 855
BspHI TCATGA 1 cut(s) 898
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 802
BspMI ACCTGC 2 cut(s) 791, 892
BspPI GGATC 2 cut(s) 543, 903
BsrI ACTGG 4 cut(s) 262, 359, 409, 684
BssECI CCNNGG 3 cut(s) 304, 338, 862
BssMI GATC 8 cut(s) 183, 211, 249, 535, 808, 841, 895, 967
BssNAI GTATAC 1 cut(s) 623
BssT1I CCWWGG 1 cut(s) 338
Bst1107I GTATAC 1 cut(s) 623
Bst2UI CCWGG 2 cut(s) 305, 426
Bst4CI ACNGT 3 cut(s) 104, 144, 247
BstC8I GCNNGC 1 cut(s) 949
BstDEI CTNAG 6 cut(s) 114, 384, 546, 779, 829, 891
BstDSI CCRYGG 1 cut(s) 338
BstF5I GGATG 3 cut(s) 40, 89, 949
BstFNI CGCG 1 cut(s) 855
BstHHI GCGC 2 cut(s) 11, 857
BstKTI GATC 8 cut(s) 186, 214, 252, 538, 811, 844, 898, 970
BstMAI GTCTC 1 cut(s) 832
BstMBI GATC 8 cut(s) 183, 211, 249, 535, 808, 841, 895, 967
BstMCI CGRYCG 1 cut(s) 146
BstNI CCWGG 2 cut(s) 305, 426
BstSCI CCNGG 2 cut(s) 303, 424
BstSFI CTRYAG 1 cut(s) 798
BstUI CGCG 1 cut(s) 855
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 2 cut(s) 51, 57
BstX2I RGATCY 2 cut(s) 211, 808
BstYI RGATCY 2 cut(s) 211, 808
BstZ17I GTATAC 1 cut(s) 623
BsuRI GGCC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 338
BtsCI GGATG 3 cut(s) 40, 89, 949
BtsI GCAGTG 1 cut(s) 958
BtsIMutI CAGTG 5 cut(s) 352, 402, 691, 695, 958
BveI ACCTGC 2 cut(s) 791, 892
Cac8I GCNNGC 1 cut(s) 949
CciI TCATGA 1 cut(s) 898
CfoI GCGC 2 cut(s) 11, 857
Cfr13I GGNCC 3 cut(s) 74, 377, 644
Csp6I GTAC 2 cut(s) 40, 833
CviAII CATG 4 cut(s) 290, 339, 785, 899
CviQI GTAC 2 cut(s) 40, 833
DdeI CTNAG 6 cut(s) 114, 384, 546, 779, 829, 891
DpnI GATC 8 cut(s) 185, 213, 251, 537, 810, 843, 897, 969
DpnII GATC 8 cut(s) 183, 211, 249, 535, 808, 841, 895, 967
EciI GGCGGA 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 2 cut(s) 377, 644
Eco57I CTGAAG 1 cut(s) 776
EcoRII CCWGG 2 cut(s) 303, 424
EcoT14I CCWWGG 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 4 cut(s) 293, 342, 788, 902
FaqI GGGAC 2 cut(s) 527, 576
FatI CATG 4 cut(s) 289, 338, 784, 898
FblI GTMKAC 1 cut(s) 622
Fnu4HI GCNGC 2 cut(s) 167, 983
FokI GGATG 3 cut(s) 47, 76, 956
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 167, 983
FspBI CTAG 3 cut(s) 132, 507, 822
GlaI GCGC 2 cut(s) 10, 856
GluI GCNGC 2 cut(s) 167, 983
HaeIII GGCC 1 cut(s) 76
HhaI GCGC 2 cut(s) 11, 857
Hin1II CATG 4 cut(s) 293, 342, 788, 902
Hin6I GCGC 2 cut(s) 9, 855
HinP1I GCGC 2 cut(s) 9, 855
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 7 cut(s) 195, 487, 497, 700, 781, 904, 962
HphI GGTGA 4 cut(s) 169, 259, 408, 701
Hpy166II GTNNAC 3 cut(s) 283, 623, 754
Hpy188I TCNGA 8 cut(s) 366, 462, 502, 611, 655, 780, 795, 967
Hpy188III TCNNGA 3 cut(s) 26, 199, 899
Hpy8I GTNNAC 3 cut(s) 283, 623, 754
HpyAV CCTTC 4 cut(s) 87, 168, 287, 719
HpyCH4III ACNGT 3 cut(s) 104, 144, 247
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 6 cut(s) 317, 473, 640, 695, 788, 800
HpyF3I CTNAG 6 cut(s) 114, 384, 546, 779, 829, 891
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 4 cut(s) 293, 342, 788, 902
HspAI GCGC 2 cut(s) 9, 855
Kzo9I GATC 8 cut(s) 183, 211, 249, 535, 808, 841, 895, 967
LmnI GCTCC 4 cut(s) 65, 163, 177, 712
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 5 cut(s) 100, 646, 682, 750, 934
MaeI CTAG 3 cut(s) 132, 507, 822
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 2 cut(s) 157, 813
MalI GATC 8 cut(s) 185, 213, 251, 537, 810, 843, 897, 969
MboI GATC 8 cut(s) 183, 211, 249, 535, 808, 841, 895, 967
MboII GAAGA 3 cut(s) 56, 62, 72
MflI RGATCY 2 cut(s) 211, 808
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 3 cut(s) 85, 411, 648
MlyI GAGTC 1 cut(s) 790
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 169
MspR9I CCNGG 2 cut(s) 305, 426
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 2 cut(s) 305, 426
MvnI CGCG 1 cut(s) 855
NcoI CCATGG 1 cut(s) 338
NdeII GATC 8 cut(s) 183, 211, 249, 535, 808, 841, 895, 967
NlaIII CATG 4 cut(s) 293, 342, 788, 902
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 157, 813
OliI CACNNNNGTG 1 cut(s) 357
PagI TCATGA 1 cut(s) 898
PaqCI CACCTGC 2 cut(s) 791, 892
PcsI WCGNNNNNNNCGW 1 cut(s) 859
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 6 cut(s) 195, 487, 497, 700, 904, 962
PflMI CCANNNNNTGG 1 cut(s) 425
PfoI TCCNGGA 1 cut(s) 424
PkrI GCNGC 2 cut(s) 168, 984
PleI GAGTC 1 cut(s) 789
PpsI GAGTC 1 cut(s) 789
Psp6I CCWGG 2 cut(s) 303, 424
PspGI CCWGG 2 cut(s) 303, 424
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 3 cut(s) 74, 377, 644
PstI CTGCAG 1 cut(s) 802
PsuI RGATCY 2 cut(s) 211, 808
RsaI GTAC 2 cut(s) 41, 834
RsaNI GTAC 2 cut(s) 40, 833
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 2 cut(s) 167, 983
Sau3AI GATC 8 cut(s) 183, 211, 249, 535, 808, 841, 895, 967
Sau96I GGNCC 3 cut(s) 74, 377, 644
SchI GAGTC 1 cut(s) 790
ScrFI CCNGG 2 cut(s) 305, 426
SduI GDGCHC 1 cut(s) 324
SfaNI GCATC 5 cut(s) 100, 646, 682, 750, 934
SfcI CTRYAG 1 cut(s) 798
SinI GGWCC 2 cut(s) 377, 644
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 2 cut(s) 660, 745
SmoI CTYRAG 2 cut(s) 660, 745
Sse9I AATT 3 cut(s) 85, 411, 648
SsiI CCGC 3 cut(s) 169, 572, 982
SspI AATATT 1 cut(s) 466
SspMI CTAG 3 cut(s) 132, 507, 822
StyD4I CCNGG 2 cut(s) 303, 424
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 3 cut(s) 104, 144, 247
TaiI ACGT 1 cut(s) 519
TaqI TCGA 4 cut(s) 146, 252, 723, 914
TasI AATT 3 cut(s) 85, 411, 648
TatI WGTACW 1 cut(s) 832
TauI GCSGC 1 cut(s) 985
TfiI GAWTC 6 cut(s) 195, 487, 497, 700, 904, 962
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 5 cut(s) 359, 409, 691, 702, 958
TseFI GTSAC 2 cut(s) 157, 813
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 2 cut(s) 157, 813
TspDTI ATGAA 3 cut(s) 78, 306, 453
TspGWI ACGGA 2 cut(s) 176, 657
TspRI CASTG 5 cut(s) 359, 409, 691, 702, 958
Van91I CCANNNNNTGG 1 cut(s) 425
VpaK11BI GGWCC 2 cut(s) 377, 644
XmiI GTMKAC 1 cut(s) 622
XspI CTAG 3 cut(s) 132, 507, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.