Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008235

Physical Location & Seq

Genomic Coordinates Forward (+)

25957567 .. 25960401

Gene Structure 2835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGAGTTTTTCACAAGATATGGATAATGAGTATGAGAAGCTGATAAGAAGAATGAATCCACCAAGGGTTGTGATTGATAATGACTCTTGCAAGAAGGCAACTGTGATAAGGGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTTACTGATCTTAACCTTACTATCACTAAGGCGTACATATCTTCTGATGGTGGTTGGTTTATGGATGTATTTAATGTCACTGATCAAGATGGTAACAAAGTCACTGATGAAGTTGTTCTAGACTATATCCAAAAGTCTCTTGGGCCTGAAGCTTGTTTCTCCACTTCCATGAGATCAGTTGGTGTCATACCATCAACAGACAGCACGGTTATTGAGTTAACTGGATGTGACAGACCAGGTCTGCTGTCTGAACTGTCAGCTGTTTTGACCCATCTCAAATGCAGTGTCCTCAACGCTGAGATTTGGACACACAACACCAGAGCAGCTGCTGTGATGCAGGTCACAGATGACTTAACCGGGTGTGGCATTTCTGATCCAGAGAGGTTGTCTCGGATCAAGAACCTTCTCAGAAATGTGCTTAAGGGAAGCAACACACCAAGGGAAGCTAAAACCGTAGTGTCTCATGGGGAGGTCCACACGGATAGGAGGCTTCATCAGATGATGTTTGAGGATAGAGACTATGAACACCGTTTGGTGGATGATGATTCCTCTATCCAAGATGAAAGGCAAAGACCAGATGTTTGTGTTGATAATTGGCTCGATAAGGATTACTCTGTGGTCACAGTTAGATGTAAAGACAGACCAAAGCTTCTGTTCGACACAGTCTGCACTTTGACTGATATGCAGTATGTGGTTTTCCATGGAAGTGTTGATACTGAGGGCACCGAGGCGTTTCAGGAGTATTATGTGAGACATATAGATGGATCCCCTGTGAAATCAGAGGCAGAGAAGCAAAGAGTCATACAATGTCTTGAAGCAGCTATCAAAAGAAGAGTATCTGAGGGATTGAAGTTGGAACTGTGCACGACGGATAGAGTAGGCTTATTGTCAAACGTGACTCGCATATTCCGTGAAAACAGCCTAACGGTCACAAGAGCTGAAGTGAAAACCAAAGGAGGCAAAGCTCTAAACACATTCTATGTCAGTGATGCATCTGGTTACTCAATCGATGCTAAGACCATAGATTCCATAAGACAAACCATAGGCCAAACTATTCTCAAAGTCAAGAACAACCCTCAAGAACAACAACAAAGACAGAAATCGCCTTCTCACGAATCACCGACAAGATTTCTCTTTGGGGGTCTCTTCAAGTCGAAATCTTTTGTCAACTTTGGCTTGGTCCGTTCCTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005911 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

451

Amino Acids

50.82

Weight (kDa)

5.82

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	34 - 89	3.7e-08	ACT domain
ACT_6	PF13740	123 - 190	4.4e-06	ACT domain
ACT_ACR9_3rd	PF24931	247 - 330	2.3e-06	ACR9-like, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69040 AT1G69040
fragaria_vesca	FvH4_4g29340 FvH4_4g29340 FvH4_4g29340 FvH4_4g29340
malus_domestica	MD13G1056800.v1.1 MD16G1056200.v1.1
prunus_persica	Prupe.1G293100_v2.0.a1 Prupe.1G293100_v2.0.a1 Prupe.1G293100_v2.0.a1
pyrus_communis	pycom13g05070 pycom16g04920
rosa_chinensis	RchiOBHm_Chr4g0437401
rosa_laevigata	RLG00000006439
rosa_multiflora	Rmu_sc0006744.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378650
rosa_rugosa	Rorug04G0301100 Rorug04G0301200
rosa_samantha	Rh4AG355400 Rh4BG365700 Rh4CG379900
rosa_wichuraiana	Rw4G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AccB1I	GGYRCC	1 cut(s)	881
AclWI	GGATC	4 cut(s)	527, 560, 918, 931
AcuI	CTGAAG	2 cut(s)	327, 1119
AfaI	GTAC	2 cut(s)	153, 194
AfiI	CCNNNNNNNGG	1 cut(s)	694
AflII	CTTAAG	1 cut(s)	578
AgsI	TTSAA	4 cut(s)	146, 974, 1009, 1309
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	9 cut(s)	40, 311, 419, 485, 605, 808, 980, 1097, 1124
AluI	AGCT	9 cut(s)	40, 311, 419, 485, 605, 808, 980, 1097, 1124
Alw21I	GWGCWC	1 cut(s)	1025
Alw26I	GTCTC	6 cut(s)	300, 552, 624, 669, 904, 1307
Alw44I	GTGCAC	1 cut(s)	1021
AlwI	GGATC	4 cut(s)	527, 560, 918, 931
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	2 cut(s)	302, 1204
ApaLI	GTGCAC	1 cut(s)	1021
ApeKI	GCWGC	3 cut(s)	482, 485, 977
ArsI	GACNNNNNNTTYG	4 cut(s)	429, 461, 723, 755
Asp700I	GAANNNNTTC	1 cut(s)	273
AspS9I	GGNCC	3 cut(s)	302, 631, 1339
AsuC2I	CCSGG	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	1269
AvaII	GGWCC	2 cut(s)	631, 1339
BaeGI	GKGCMC	2 cut(s)	884, 1025
BamHI	GGATCC	1 cut(s)	923
BanI	GGYRCC	1 cut(s)	881
BarI	GAAGNNNNNNTAC	2 cut(s)	856, 888
Bbv12I	GWGCWC	1 cut(s)	1025
BbvI	GCAGC	3 cut(s)	472, 494, 989
BccI	CCATC	5 cut(s)	200, 242, 358, 438, 914
BciT130I	CCWGG	1 cut(s)	396
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	517
BcoDI	GTCTC	6 cut(s)	300, 552, 624, 669, 904, 1307
BfaI	CTAG	1 cut(s)	278
BfrI	CTTAAG	1 cut(s)	578
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	3 cut(s)	483, 486, 978
BlsI	GCNGC	3 cut(s)	484, 487, 979
Bme1390I	CCNGG	2 cut(s)	396, 517
Bme18I	GGWCC	2 cut(s)	631, 1339
BmgT120I	GGNCC	3 cut(s)	302, 631, 1339
BmiI	GGNNCC	2 cut(s)	883, 925
BmrFI	CCNGG	2 cut(s)	396, 517
BmsI	GCATC	4 cut(s)	483, 1138, 1159, 1160
BplI	GAGNNNNNCTC	2 cut(s)	532, 564
BpuEI	CTTGAG	1 cut(s)	1221
BpuMI	CCSGG	1 cut(s)	517
Bsa29I	ATCGAT	1 cut(s)	1167
BsaI	GGTCTC	1 cut(s)	1307
BsaJI	CCNNGG	4 cut(s)	62, 596, 859, 885
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	396
BseCI	ATCGAT	1 cut(s)	1167
BseDI	CCNNGG	4 cut(s)	62, 596, 859, 885
BseGI	GGATG	3 cut(s)	229, 389, 703
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMII	CTCAG	4 cut(s)	447, 580, 867, 990
BseNI	ACTGG	1 cut(s)	385
BseSI	GKGCMC	2 cut(s)	884, 1025
BseXI	GCAGC	3 cut(s)	472, 494, 989
BsgI	GTGCAG	1 cut(s)	811
BshFI	GGCC	2 cut(s)	304, 1206
BshNI	GGYRCC	1 cut(s)	881
BshVI	ATCGAT	1 cut(s)	1167
BsiHKAI	GWGCWC	1 cut(s)	1025
BsiSI	CCGG	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmAI	GTCTC	6 cut(s)	300, 552, 624, 669, 904, 1307
BsnI	GGCC	2 cut(s)	304, 1206
Bso31I	GGTCTC	1 cut(s)	1307
Bsp1286I	GDGCHC	2 cut(s)	884, 1025
Bsp1407I	TGTACA	1 cut(s)	151
Bsp143I	GATC	6 cut(s)	166, 241, 332, 532, 552, 923
Bsp19I	CCATGG	1 cut(s)	859
BspANI	GGCC	2 cut(s)	304, 1206
BspCNI	CTCAG	4 cut(s)	448, 579, 868, 991
BspDI	ATCGAT	1 cut(s)	1167
BspLI	GGNNCC	2 cut(s)	883, 925
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	4 cut(s)	527, 560, 918, 931
BspT107I	GGYRCC	1 cut(s)	881
BspTI	CTTAAG	1 cut(s)	578
BspTNI	GGTCTC	1 cut(s)	1307
BsrGI	TGTACA	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	4 cut(s)	62, 596, 859, 885
BssMI	GATC	6 cut(s)	166, 241, 332, 532, 552, 923
BssT1I	CCWWGG	3 cut(s)	62, 596, 859
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	9 cut(s)	103, 367, 414, 613, 689, 784, 823, 1020, 1087
Bst6I	CTCTTC	2 cut(s)	985, 1310
BstAFI	CTTAAG	1 cut(s)	578
BstAUI	TGTACA	1 cut(s)	151
BstDEI	CTNAG	6 cut(s)	186, 456, 566, 876, 999, 1173
BstDSI	CCRYGG	1 cut(s)	859
BstF5I	GGATG	3 cut(s)	229, 389, 703
BstKTI	GATC	6 cut(s)	169, 244, 335, 535, 555, 926
BstMAI	GTCTC	6 cut(s)	300, 552, 624, 669, 904, 1307
BstMBI	GATC	6 cut(s)	166, 241, 332, 532, 552, 923
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	394, 515
BstSLI	GKGCMC	2 cut(s)	884, 1025
BstV1I	GCAGC	3 cut(s)	472, 494, 989
BstX2I	RGATCY	1 cut(s)	923
BstYI	RGATCY	1 cut(s)	923
Bsu15I	ATCGAT	1 cut(s)	1167
BsuRI	GGCC	2 cut(s)	304, 1206
BsuTUI	ATCGAT	1 cut(s)	1167
BtgI	CCRYGG	1 cut(s)	859
BtsCI	GGATG	3 cut(s)	229, 389, 703
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	4 cut(s)	237, 261, 448, 1150
BveI	ACCTGC	1 cut(s)	487
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr13I	GGNCC	3 cut(s)	302, 631, 1339
ClaI	ATCGAT	1 cut(s)	1167
CsiI	ACCWGGT	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	152, 193
CviAII	CATG	3 cut(s)	328, 623, 860
CviQI	GTAC	2 cut(s)	152, 193
DdeI	CTNAG	6 cut(s)	186, 456, 566, 876, 999, 1173
DpnI	GATC	6 cut(s)	168, 243, 334, 534, 554, 925
DpnII	GATC	6 cut(s)	166, 241, 332, 532, 552, 923
Eam1104I	CTCTTC	2 cut(s)	985, 1310
EarI	CTCTTC	2 cut(s)	985, 1310
Eco130I	CCWWGG	3 cut(s)	62, 596, 859
Eco31I	GGTCTC	1 cut(s)	1307
Eco47I	GGWCC	2 cut(s)	631, 1339
Eco57I	CTGAAG	2 cut(s)	327, 1119
EcoRII	CCWGG	1 cut(s)	394
EcoT14I	CCWWGG	3 cut(s)	62, 596, 859
EcoT22I	ATGCAT	1 cut(s)	1153
ErhI	CCWWGG	3 cut(s)	62, 596, 859
FaeI	CATG	3 cut(s)	331, 626, 863
FatI	CATG	3 cut(s)	327, 622, 859
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	483, 486, 978
FokI	GGATG	3 cut(s)	236, 396, 710
Fsp4HI	GCNGC	3 cut(s)	483, 486, 978
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	3 cut(s)	483, 486, 978
HaeIII	GGCC	2 cut(s)	304, 1206
HapII	CCGG	1 cut(s)	516
Hin1II	CATG	3 cut(s)	331, 626, 863
HincII	GTYRAC	2 cut(s)	378, 1327
HindII	GTYRAC	2 cut(s)	378, 1327
HindIII	AAGCTT	2 cut(s)	309, 806
HinfI	GANTC	8 cut(s)	55, 83, 136, 704, 957, 1057, 1184, 1274
HpaI	GTTAAC	1 cut(s)	378
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	1 cut(s)	1269
Hpy166II	GTNNAC	4 cut(s)	378, 634, 1023, 1327
Hpy188I	TCNGA	8 cut(s)	205, 409, 532, 552, 569, 657, 940, 1000
Hpy8I	GTNNAC	4 cut(s)	378, 634, 1023, 1327
Hpy99I	CGWCG	1 cut(s)	1030
HpyAV	CCTTC	3 cut(s)	88, 572, 1275
HpyCH4III	ACNGT	9 cut(s)	103, 367, 414, 613, 689, 784, 823, 1020, 1087
HpyCH4IV	ACGT	1 cut(s)	1053
HpyCH4V	TGCA	8 cut(s)	90, 122, 441, 496, 828, 844, 1023, 1151
HpyF3I	CTNAG	6 cut(s)	186, 456, 566, 876, 999, 1173
HpySE526I	ACGT	1 cut(s)	1053
Hsp92II	CATG	3 cut(s)	331, 626, 863
Ksp22I	TGATCA	1 cut(s)	241
KspAI	GTTAAC	1 cut(s)	378
Kzo9I	GATC	6 cut(s)	166, 241, 332, 532, 552, 923
Lsp1109I	GCAGC	3 cut(s)	472, 494, 989
LweI	GCATC	4 cut(s)	483, 1138, 1159, 1160
MabI	ACCWGGT	1 cut(s)	394
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	1 cut(s)	1053
MaeIII	GTNAC	9 cut(s)	235, 251, 259, 386, 499, 778, 1054, 1087, 1157
MalI	GATC	6 cut(s)	168, 243, 334, 534, 554, 925
MboI	GATC	6 cut(s)	166, 241, 332, 532, 552, 923
MboII	GAAGA	5 cut(s)	60, 131, 192, 1002, 1297
MflI	RGATCY	1 cut(s)	923
MhlI	GDGCHC	2 cut(s)	884, 1025
MluCI	AATT	1 cut(s)	751
MlyI	GAGTC	3 cut(s)	77, 966, 1051
MmeI	TCCRAC	1 cut(s)	993
Mph1103I	ATGCAT	1 cut(s)	1153
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	5 cut(s)	171, 231, 377, 512, 579
MslI	CAYNNNNRTG	3 cut(s)	326, 864, 918
MspA1I	CMGCKG	2 cut(s)	419, 485
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	2 cut(s)	396, 517
MvaI	CCWGG	1 cut(s)	396
NciI	CCSGG	1 cut(s)	517
NcoI	CCATGG	1 cut(s)	859
NdeII	GATC	6 cut(s)	166, 241, 332, 532, 552, 923
NlaIII	CATG	3 cut(s)	331, 626, 863
NlaIV	GGNNCC	2 cut(s)	883, 925
NmuCI	GTSAC	7 cut(s)	235, 259, 386, 499, 778, 1054, 1087
NsiI	ATGCAT	1 cut(s)	1153
PcsI	WCGNNNNNNNCGW	1 cut(s)	1066
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	5 cut(s)	55, 136, 704, 1184, 1274
PflFI	GACNNNGTC	2 cut(s)	396, 821
PkrI	GCNGC	3 cut(s)	484, 487, 979
PleI	GAGTC	3 cut(s)	77, 965, 1051
PpsI	GAGTC	3 cut(s)	77, 965, 1051
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	883, 925
PspPI	GGNCC	3 cut(s)	302, 631, 1339
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	923
PsyI	GACNNNGTC	2 cut(s)	396, 821
PvuII	CAGCTG	2 cut(s)	419, 485
RsaI	GTAC	2 cut(s)	153, 194
RsaNI	GTAC	2 cut(s)	152, 193
RseI	CAYNNNNRTG	3 cut(s)	326, 864, 918
SaqAI	TTAA	5 cut(s)	171, 231, 377, 512, 579
SatI	GCNGC	3 cut(s)	483, 486, 978
Sau3AI	GATC	6 cut(s)	166, 241, 332, 532, 552, 923
Sau96I	GGNCC	3 cut(s)	302, 631, 1339
SchI	GAGTC	3 cut(s)	77, 966, 1051
ScrFI	CCNGG	2 cut(s)	396, 517
SduI	GDGCHC	2 cut(s)	884, 1025
SexAI	ACCWGGT	1 cut(s)	394
SfaNI	GCATC	4 cut(s)	483, 1138, 1159, 1160
SinI	GGWCC	2 cut(s)	631, 1339
SmiMI	CAYNNNNRTG	3 cut(s)	326, 864, 918
SmlI	CTYRAG	2 cut(s)	578, 1236
SmoI	CTYRAG	2 cut(s)	578, 1236
Sse9I	AATT	1 cut(s)	751
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	2 cut(s)	394, 515
StyI	CCWWGG	3 cut(s)	62, 596, 859
TaaI	ACNGT	9 cut(s)	103, 367, 414, 613, 689, 784, 823, 1020, 1087
TaiI	ACGT	1 cut(s)	1056
TaqI	TCGA	4 cut(s)	759, 816, 1167, 1313
TasI	AATT	1 cut(s)	751
TatI	WGTACW	1 cut(s)	151
TfiI	GAWTC	5 cut(s)	55, 136, 704, 1184, 1274
Tru1I	TTAA	5 cut(s)	171, 231, 377, 512, 579
Tru9I	TTAA	5 cut(s)	171, 231, 377, 512, 579
TscAI	CASTG	4 cut(s)	244, 268, 448, 1150
TseFI	GTSAC	7 cut(s)	235, 259, 386, 499, 778, 1054, 1087
TseI	GCWGC	3 cut(s)	482, 485, 977
Tsp45I	GTSAC	7 cut(s)	235, 259, 386, 499, 778, 1054, 1087
TspDTI	ATGAA	6 cut(s)	68, 141, 282, 641, 696, 735
TspGWI	ACGGA	4 cut(s)	653, 1043, 1058, 1331
TspRI	CASTG	4 cut(s)	244, 268, 448, 1150
Tth111I	GACNNNGTC	2 cut(s)	396, 821
Vha464I	CTTAAG	1 cut(s)	578
VneI	GTGCAC	1 cut(s)	1021
VpaK11BI	GGWCC	2 cut(s)	631, 1339
XbaI	TCTAGA	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.