Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008235

Physical Location & Seq

Genomic Coordinates Reverse (-)

29081684 .. 29085519

Gene Structure 3836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G293100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGAGGTTAGCATGAGCTTTTCACATGACATGGATGATGAATATGAGAAACTCATCCGGAGAATGAACCCACCGAGGGTTGTAATTGATAATAAAGCCTGCAAGAATGCTACGGTGATAAGGGTGGATAGTGCAAACGAGTATGGGATACTTCTGGAAGTGGTACAAGTTCTAACTGATCTTAACCTTATCGTAACCAAAGCGTATATCTCTTCGGATGGTGGCTGGTTCATGGACGTTTTTAATGTCACCGATCAAGATGGAAACAAGGTTACAGATGAAGGGGTTCTGGAGTATATTCAAAAGTCTCTTGGTCCGGAGGCTTGCTTTGCATCTTCCATGAGAACTGTTGGGGTTAAACAATCAACGGACCATACTGCAATTGAGCTAACTGGAAGTGACAGACCGGGATTACTTTCTGAAGTGAGTGCTGTCCTCACCAATCTCAAATGCAATGTAGTGAGTGCGGAAGTCTGGACGCACAACACAAGGGCTGCATCAGTGATGCACGTTACCGATGAGGAGACGGGGTTGGCAGTTACTGATCCTCAGAGGTTAGCCAGGATTAAGGAATTATTATGCAATGTGCTTAAGGGCAGCAACAAAACCAGGGGAGCTAGGACTGTTGTATCTCACGCTGTTACACACACTGAAAGAAGGCTTCACCAAATGATGTTTGCAGATAGGGATTATGAACGAGTTGATGATGGTCTCTTGGATGACAACCAAAGACCGAATGTGAATGTTGTTAATTGGCAGGACAAAGACTACTCGGTGGTGACTATTCGGAGTAAAGATAGGCCAAAGCTTCTCTTCGATACAGTTTGCACTTTGACAGACATGCAATATGTGGTTTTTCATGCTAGTATTGATGCTGAGGGTCCAGAAGCTTATCAGGAATACTATATCAGGCATATAGATGGATCCCCTGTGAAATCAGATGCAGAGAGACAAAGAGTGATACAATGCCTTGAAGCAGCTATTGAGAGAAGAGTATCTGAGGGTTTGAAGTTAGAACTCTGCACTAGTGACAGAGTTGGGCTGCTATCTGATGTCACTCGGATCTTTCGAGAGAATAGCCTTACCGTAACCCGAGCAGAAGTGGCAACCAAAGCAGGCAAAGCTGTTAATACGTTCTATGTTCGTGATACATCAGGCTACCCTGTTGACTCCAAGACCATAGAGGCAATCAGGCAAGTAATTGGGCAGACCATACTTAAAGTGAAAGGCAGCCCTGAAGACCCAAAACCAGGTTCTGAGGAATCTCCAACCAGGTTCCTCTTTGGGGGTCTCTTCAAGTCCAGATCTTTTGTCAATTTTAAATTGGTTAGGTCCTATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005911 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

448

Amino Acids

50.06

Weight (kDa)

5.72

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69040 AT1G69040
fragaria_vesca	FvH4_4g29340 FvH4_4g29340 FvH4_4g29340 FvH4_4g29340
malus_domestica	MD13G1056800.v1.1 MD16G1056200.v1.1
prunus_persica	Prupe.1G293100_v2.0.a1 Prupe.1G293100_v2.0.a1 Prupe.1G293100_v2.0.a1
pyrus_communis	pycom13g05070 pycom16g04920
rosa_chinensis	RchiOBHm_Chr4g0437401
rosa_laevigata	RLG00000006439
rosa_multiflora	Rmu_sc0006744.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378650
rosa_rugosa	Rorug04G0301100 Rorug04G0301200
rosa_samantha	Rh4AG355400 Rh4BG365700 Rh4CG379900
rosa_wichuraiana	Rw4G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	57, 316
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	4 cut(s)	539, 918, 931, 1070
AcuI	CTGAAG	2 cut(s)	441, 1257
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	3 cut(s)	76, 1250, 1285
AflII	CTTAAG	1 cut(s)	590
AgsI	TTSAA	4 cut(s)	302, 974, 1009, 1297
AhlI	ACTAGT	1 cut(s)	1025
AjnI	CCWGG	4 cut(s)	560, 608, 1249, 1271
AjuI	GAANNNNNNNTTGG	2 cut(s)	1237, 1269
AluBI	AGCT	7 cut(s)	18, 388, 617, 808, 890, 980, 1124
AluI	AGCT	7 cut(s)	18, 388, 617, 808, 890, 980, 1124
Alw26I	GTCTC	5 cut(s)	312, 518, 716, 943, 1295
AlwI	GGATC	4 cut(s)	539, 918, 931, 1070
AlwNI	CAGNNNCTG	2 cut(s)	542, 1256
Ama87I	CYCGRG	1 cut(s)	1092
Aor13HI	TCCGGA	2 cut(s)	57, 316
AoxI	GGCC	1 cut(s)	800
ApeKI	GCWGC	5 cut(s)	494, 597, 977, 1042, 1230
Asp700I	GAANNNNTTC	1 cut(s)	285
AspS9I	GGNCC	4 cut(s)	314, 370, 881, 1332
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	5 cut(s)	127, 241, 430, 656, 790
AvaI	CYCGRG	1 cut(s)	1092
AvaII	GGWCC	4 cut(s)	314, 370, 881, 1332
BaeI	ACNNNNGTAYC	2 cut(s)	612, 645
BamHI	GGATCC	1 cut(s)	923
BbsI	GAAGAC	1 cut(s)	1245
BbvCI	CCTCAGC	1 cut(s)	876
BbvI	GCAGC	5 cut(s)	481, 609, 989, 1029, 1242
BccI	CCATC	4 cut(s)	212, 254, 701, 914
BciT130I	CCWGG	4 cut(s)	562, 610, 1251, 1273
BciVI	GTATCC	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	5 cut(s)	312, 518, 716, 943, 1295
BcuI	ACTAGT	1 cut(s)	1025
BfaI	CTAG	3 cut(s)	618, 864, 1026
BfrI	CTTAAG	1 cut(s)	590
BfuI	GTATCC	1 cut(s)	141
BglII	AGATCT	1 cut(s)	1304
BisI	GCNGC	5 cut(s)	495, 598, 978, 1043, 1231
BlsI	GCNGC	5 cut(s)	496, 599, 979, 1044, 1232
Bme1390I	CCNGG	5 cut(s)	408, 562, 610, 1251, 1273
Bme18I	GGWCC	4 cut(s)	314, 370, 881, 1332
BmeT110I	CYCGRG	1 cut(s)	1092
BmgT120I	GGNCC	4 cut(s)	314, 370, 881, 1332
BmiI	GGNNCC	3 cut(s)	882, 925, 1277
BmrFI	CCNGG	5 cut(s)	408, 562, 610, 1251, 1273
BmsI	GCATC	5 cut(s)	341, 495, 506, 862, 931
BpiI	GAAGAC	1 cut(s)	1245
BpmI	CTGGAG	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	876
BpuMI	CCSGG	1 cut(s)	408
BsaI	GGTCTC	2 cut(s)	716, 1295
BsaJI	CCNNGG	2 cut(s)	74, 609
BsaWI	WCCGGW	2 cut(s)	57, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 1250, 1285
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	2 cut(s)	460, 589
BseAI	TCCGGA	2 cut(s)	57, 316
BseBI	CCWGG	4 cut(s)	562, 610, 1251, 1273
BseDI	CCNNGG	2 cut(s)	74, 609
BseGI	GGATG	4 cut(s)	40, 54, 223, 724
BseLI	CCNNNNNNNGG	3 cut(s)	76, 1250, 1285
BseMI	GCAATG	2 cut(s)	460, 589
BseMII	CTCAG	4 cut(s)	563, 867, 990, 1248
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	5 cut(s)	481, 609, 989, 1029, 1242
BsgI	GTGCAG	1 cut(s)	1006
BshFI	GGCC	1 cut(s)	802
BsiHKCI	CYCGRG	1 cut(s)	1092
BsiSI	CCGG	3 cut(s)	58, 317, 407
BslI	CCNNNNNNNGG	3 cut(s)	76, 1250, 1285
BsmAI	GTCTC	5 cut(s)	312, 518, 716, 943, 1295
BsmBI	CGTCTC	1 cut(s)	518
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	802
Bso31I	GGTCTC	2 cut(s)	716, 1295
BsoBI	CYCGRG	1 cut(s)	1092
Bsp13I	TCCGGA	2 cut(s)	57, 316
Bsp143I	GATC	6 cut(s)	178, 253, 544, 923, 1062, 1304
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	1 cut(s)	802
BspCNI	CTCAG	4 cut(s)	562, 868, 991, 1249
BspEI	TCCGGA	2 cut(s)	57, 316
BspLI	GGNNCC	3 cut(s)	882, 925, 1277
BspPI	GGATC	4 cut(s)	539, 918, 931, 1070
BspTI	CTTAAG	1 cut(s)	590
BspTNI	GGTCTC	2 cut(s)	716, 1295
BsrDI	GCAATG	2 cut(s)	460, 589
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	2 cut(s)	74, 609
BssMI	GATC	6 cut(s)	178, 253, 544, 923, 1062, 1304
Bst2UI	CCWGG	4 cut(s)	562, 610, 1251, 1273
Bst4CI	ACNGT	5 cut(s)	115, 349, 625, 823, 1087
Bst6I	CTCTTC	4 cut(s)	217, 818, 985, 1298
BstAFI	CTTAAG	1 cut(s)	590
BstC8I	GCNNGC	3 cut(s)	100, 325, 1117
BstDEI	CTNAG	4 cut(s)	549, 876, 999, 1257
BstF5I	GGATG	4 cut(s)	40, 54, 223, 724
BstKTI	GATC	6 cut(s)	181, 256, 547, 926, 1065, 1307
BstMAI	GTCTC	5 cut(s)	312, 518, 716, 943, 1295
BstMBI	GATC	6 cut(s)	178, 253, 544, 923, 1062, 1304
BstMWI	GCNNNNNNNGC	4 cut(s)	329, 1103, 1112, 1121
BstNI	CCWGG	4 cut(s)	562, 610, 1251, 1273
BstNSI	RCATGY	1 cut(s)	844
BstSCI	CCNGG	5 cut(s)	406, 560, 608, 1249, 1271
BstV1I	GCAGC	5 cut(s)	481, 609, 989, 1029, 1242
BstV2I	GAAGAC	1 cut(s)	1245
BstX2I	RGATCY	3 cut(s)	923, 1062, 1304
BstYI	RGATCY	3 cut(s)	923, 1062, 1304
BsuI	GTATCC	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	802
BtsCI	GGATG	4 cut(s)	40, 54, 223, 724
BtsIMutI	CAGTG	2 cut(s)	507, 648
Cac8I	GCNNGC	3 cut(s)	100, 325, 1117
CaiI	CAGNNNCTG	2 cut(s)	542, 1256
Cfr13I	GGNCC	4 cut(s)	314, 370, 881, 1332
CseI	GACGC	1 cut(s)	487
CsiI	ACCWGGT	2 cut(s)	1249, 1271
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	7 cut(s)	13, 26, 31, 232, 340, 841, 860
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	4 cut(s)	549, 876, 999, 1257
DpnI	GATC	6 cut(s)	180, 255, 546, 925, 1064, 1306
DpnII	GATC	6 cut(s)	178, 253, 544, 923, 1062, 1304
DraI	TTTAAA	1 cut(s)	1321
Eam1104I	CTCTTC	4 cut(s)	217, 818, 985, 1298
EarI	CTCTTC	4 cut(s)	217, 818, 985, 1298
Eco31I	GGTCTC	2 cut(s)	716, 1295
Eco47I	GGWCC	4 cut(s)	314, 370, 881, 1332
Eco57I	CTGAAG	2 cut(s)	441, 1257
Eco88I	CYCGRG	1 cut(s)	1092
EcoO109I	RGGNCCY	1 cut(s)	1332
EcoRII	CCWGG	4 cut(s)	560, 608, 1249, 1271
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	7 cut(s)	16, 29, 34, 235, 343, 844, 863
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FatI	CATG	7 cut(s)	12, 25, 30, 231, 339, 840, 859
Fnu4HI	GCNGC	5 cut(s)	495, 598, 978, 1043, 1231
FokI	GGATG	4 cut(s)	41, 47, 230, 731
Fsp4HI	GCNGC	5 cut(s)	495, 598, 978, 1043, 1231
FspBI	CTAG	3 cut(s)	618, 864, 1026
GluI	GCNGC	5 cut(s)	495, 598, 978, 1043, 1231
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	802
HapII	CCGG	3 cut(s)	58, 317, 407
HgaI	GACGC	1 cut(s)	487
Hin1II	CATG	7 cut(s)	16, 29, 34, 235, 343, 844, 863
HincII	GTYRAC	1 cut(s)	1168
HindII	GTYRAC	1 cut(s)	1168
HindIII	AAGCTT	2 cut(s)	806, 888
HinfI	GANTC	2 cut(s)	1169, 1262
HpaII	CCGG	3 cut(s)	58, 317, 407
HphI	GGTGA	5 cut(s)	127, 241, 430, 656, 790
Hpy166II	GTNNAC	1 cut(s)	1168
Hpy188I	TCNGA	9 cut(s)	217, 421, 552, 789, 940, 1000, 1051, 1062, 1258
Hpy8I	GTNNAC	1 cut(s)	1168
HpyAV	CCTTC	2 cut(s)	275, 651
HpyCH4III	ACNGT	5 cut(s)	115, 349, 625, 823, 1087
HpyCH4IV	ACGT	3 cut(s)	237, 510, 1133
HpyF10VI	GCNNNNNNNGC	4 cut(s)	329, 1103, 1112, 1121
HpyF3I	CTNAG	4 cut(s)	549, 876, 999, 1257
HpySE526I	ACGT	3 cut(s)	237, 510, 1133
Hsp92II	CATG	7 cut(s)	16, 29, 34, 235, 343, 844, 863
Kpn2I	TCCGGA	2 cut(s)	57, 316
Kzo9I	GATC	6 cut(s)	178, 253, 544, 923, 1062, 1304
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	5 cut(s)	481, 609, 989, 1029, 1242
LweI	GCATC	5 cut(s)	341, 495, 506, 862, 931
MabI	ACCWGGT	2 cut(s)	1249, 1271
MaeI	CTAG	3 cut(s)	618, 864, 1026
MaeII	ACGT	3 cut(s)	237, 510, 1133
MalI	GATC	6 cut(s)	180, 255, 546, 925, 1064, 1306
MboI	GATC	6 cut(s)	178, 253, 544, 923, 1062, 1304
MboII	GAAGA	6 cut(s)	204, 327, 805, 1002, 1250, 1285
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	3 cut(s)	923, 1062, 1304
MluCI	AATT	7 cut(s)	84, 381, 572, 751, 1200, 1315, 1322
MlyI	GAGTC	1 cut(s)	1163
MmeI	TCCRAC	1 cut(s)	1292
MroI	TCCGGA	2 cut(s)	57, 316
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	9 cut(s)	183, 243, 357, 567, 591, 750, 1128, 1218, 1320
MslI	CAYNNNNRTG	1 cut(s)	918
MspCI	CTTAAG	1 cut(s)	590
MspI	CCGG	3 cut(s)	58, 317, 407
MspR9I	CCNGG	5 cut(s)	408, 562, 610, 1251, 1273
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	4 cut(s)	562, 610, 1251, 1273
MwoI	GCNNNNNNNGC	4 cut(s)	329, 1103, 1112, 1121
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	6 cut(s)	178, 253, 544, 923, 1062, 1304
NlaIII	CATG	7 cut(s)	16, 29, 34, 235, 343, 844, 863
NlaIV	GGNNCC	3 cut(s)	882, 925, 1277
NmuCI	GTSAC	5 cut(s)	247, 398, 778, 1028, 1054
NspI	RCATGY	1 cut(s)	844
PcsI	WCGNNNNNNNCGW	1 cut(s)	1066
PctI	GAATGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	1262
PkrI	GCNGC	5 cut(s)	496, 599, 979, 1044, 1232
PleI	GAGTC	1 cut(s)	1163
PpsI	GAGTC	1 cut(s)	1163
PpuMI	RGGWCCY	1 cut(s)	1332
Psp5II	RGGWCCY	1 cut(s)	1332
Psp6I	CCWGG	4 cut(s)	560, 608, 1249, 1271
PspGI	CCWGG	4 cut(s)	560, 608, 1249, 1271
PspN4I	GGNNCC	3 cut(s)	882, 925, 1277
PspPI	GGNCC	4 cut(s)	314, 370, 881, 1332
PspPPI	RGGWCCY	1 cut(s)	1332
PstNI	CAGNNNCTG	2 cut(s)	542, 1256
PsuI	RGATCY	3 cut(s)	923, 1062, 1304
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	918
SaqAI	TTAA	9 cut(s)	183, 243, 357, 567, 591, 750, 1128, 1218, 1320
SatI	GCNGC	5 cut(s)	495, 598, 978, 1043, 1231
Sau3AI	GATC	6 cut(s)	178, 253, 544, 923, 1062, 1304
Sau96I	GGNCC	4 cut(s)	314, 370, 881, 1332
SchI	GAGTC	1 cut(s)	1163
ScrFI	CCNGG	5 cut(s)	408, 562, 610, 1251, 1273
SexAI	ACCWGGT	2 cut(s)	1249, 1271
SfaNI	GCATC	5 cut(s)	341, 495, 506, 862, 931
SinI	GGWCC	4 cut(s)	314, 370, 881, 1332
SmiMI	CAYNNNNRTG	1 cut(s)	918
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
SpeI	ACTAGT	1 cut(s)	1025
Sse9I	AATT	7 cut(s)	84, 381, 572, 751, 1200, 1315, 1322
SsiI	CCGC	1 cut(s)	467
SspMI	CTAG	3 cut(s)	618, 864, 1026
StyD4I	CCNGG	5 cut(s)	406, 560, 608, 1249, 1271
TaaI	ACNGT	5 cut(s)	115, 349, 625, 823, 1087
TaiI	ACGT	3 cut(s)	240, 513, 1136
TaqI	TCGA	2 cut(s)	816, 1069
TaqII	GACCGA	1 cut(s)	748
TasI	AATT	7 cut(s)	84, 381, 572, 751, 1200, 1315, 1322
TfiI	GAWTC	1 cut(s)	1262
Tru1I	TTAA	9 cut(s)	183, 243, 357, 567, 591, 750, 1128, 1218, 1320
Tru9I	TTAA	9 cut(s)	183, 243, 357, 567, 591, 750, 1128, 1218, 1320
TscAI	CASTG	2 cut(s)	507, 655
TseFI	GTSAC	5 cut(s)	247, 398, 778, 1028, 1054
TseI	GCWGC	5 cut(s)	494, 597, 977, 1042, 1230
Tsp45I	GTSAC	5 cut(s)	247, 398, 778, 1028, 1054
TspDTI	ATGAA	6 cut(s)	54, 80, 220, 294, 708, 848
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	2 cut(s)	507, 655
Vha464I	CTTAAG	1 cut(s)	590
VpaK11BI	GGWCC	4 cut(s)	314, 370, 881, 1332
XceI	RCATGY	1 cut(s)	844
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	3 cut(s)	618, 864, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.