FvH4_4g29340

ACT domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
29523108 .. 29526779
3672 bp
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UTR
Exon/CDS
Intron
FvH4_4g29340.t2

Sequence Viewer

Length: 1347 bp
ATGGAGGTTAGCATGAGCTTTTCAAATGACATGGATGATGAGTATGAGAAACTTTGCAGGAGAATGAACCCACCAAGGGTTGTGATTGATAATGAAGCCTGCAAGAATGCTACGGTGATAAGGGTTGATAGTGCTAACAAACTTGGAATACTTCTAGAAGTTGTACAGATACTCACTGATCTTAACCTTATTGTAACCAAAGCGTACATATCTTCGGATGGAGGCTGGTTCATGGATGTTTTTAATGTCACTGATCAAGACGGAAACAAGGTTACAGATGAAGGAGTTTTGGACTATATTCGAAAGTCTCTTGGCCCTGAGTCTTGCTTTGCCTCTTCCATGAGATCTGTTGGTGTTATACAATCCATGGACCATACTACACTTGAGCTAAGTGGAACTGACAGACCGGGATTACTCTCTGAAGTGAGTGCTGTGCTCGCCATTCTTAAATGCAATGTAGTGGGTGCGCAAGTGTGGACGCACAACACAAGGGCTGCATCTGTGATGCACATTACCAATGAGGAGACGGGGTTGGCTATTACTGATCCCGAGAGGTTAGCTAGTATTAGGGAATCTGTATGCAATGTACTTAAGGGAAGCATCAAATCCAGGGGATCTAGGACTGTTGTCTCTCACACTGTCACACACCCAGAACGAAGGCTTCACCAAATGATGTTTGCAGATAGGGACTATGACCGAATTAAGGATGAAAGTGTCTTGGATGACAAGCAAAGACCAGATGTGAATGTTGTTAACTGGTATGATAAGGACTACTCGGTGGTTACTATTCGGAGTAAAGATAGGCCAAAGCTTCTCTTCGATACAGTTTGCACTCTAACAGACATGCAATATGTGGTTTATCATGCGAATATTGATGCTGAGGGGCCTGAAGCTTATCAGGAATACTATATCAGGCATATAGATGGATCTCCTGTGAAATCAGATGCAGAGAGACAAAGAGTGATACAATGCCTTGAAGCAGCTATTGAGAGAAGAGTATCTGAGGGTTTGAAGCTAGAACTCTGTACTACAGATAGAGTTGGGCTGCTCTCTGATGTCACTCGAATATTCCGAGAGAATAGCCTTACCGTAACCAGAGCAGAAGTGACAACCAAAGCAGGCAAAGCTGTTAATACGTTTTATGTTCGTGAGGCATCTGGTAATCCTGTTGACTCCAAAACCATAGAGTCGATTCGTCAAGAAATTGGGCAGACCATTCTGAAAGTGAAAGGCACTCCTGAAGACTTCAATCCTGGTTCCCAGGAATCACCAACCAGGTTCCTCTTTGGTGGTCTGTTCAAGTCAAGATCTTTTGTGAATTTTAAACTGATTAGGTCTTATTCCTGA

Protein Analysis

449

Amino Acids

50.3

Weight (kDa)

5.65

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACT PF01842 49 - 98 1e-07 ACT domain
ACT PF01842 266 - 324 2e-06 ACT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 468
AclWI GGATC 3 cut(s) 539, 622, 934
AcsI RAATTY 1 cut(s) 1318
AcuI CTGAAG 3 cut(s) 441, 909, 1260
AfaI GTAC 4 cut(s) 165, 206, 588, 1027
AfiI CCNNNNNNNGG 2 cut(s) 76, 703
AflII CTTAAG 1 cut(s) 590
AgsI TTSAA 5 cut(s) 24, 977, 1012, 1249, 1300
AjnI CCWGG 4 cut(s) 608, 1252, 1260, 1274
AluBI AGCT 8 cut(s) 18, 388, 560, 811, 893, 983, 1015, 1127
AluI AGCT 8 cut(s) 18, 388, 560, 811, 893, 983, 1015, 1127
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 4 cut(s) 312, 518, 634, 946
AlwI GGATC 3 cut(s) 539, 622, 934
Ama87I CYCGRG 1 cut(s) 548
AoxI GGCC 3 cut(s) 313, 803, 884
ApeKI GCWGC 3 cut(s) 494, 980, 1045
ApoI RAATTY 1 cut(s) 1318
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 3 cut(s) 314, 370, 884
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 3 cut(s) 127, 656, 1260
AsuII TTCGAA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 1248
Bbv12I GWGCWC 1 cut(s) 438
BbvCI CCTCAGC 1 cut(s) 879
BbvI GCAGC 3 cut(s) 481, 992, 1032
BccI CCATC 2 cut(s) 212, 917
BciT130I CCWGG 4 cut(s) 610, 1254, 1262, 1276
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 408
BcoDI GTCTC 4 cut(s) 312, 518, 634, 946
BfaI CTAG 4 cut(s) 155, 561, 618, 1016
BfmI CTRYAG 1 cut(s) 1029
BfrI CTTAAG 1 cut(s) 590
BglII AGATCT 2 cut(s) 344, 1307
BisI GCNGC 3 cut(s) 495, 981, 1046
BlsI GCNGC 3 cut(s) 496, 982, 1047
Bme1390I CCNGG 5 cut(s) 408, 610, 1254, 1262, 1276
Bme18I GGWCC 1 cut(s) 370
BmeT110I CYCGRG 1 cut(s) 548
BmgT120I GGNCC 3 cut(s) 314, 370, 884
BmiI GGNNCC 3 cut(s) 885, 1258, 1280
BmrFI CCNGG 5 cut(s) 408, 610, 1254, 1262, 1276
BmsI GCATC 6 cut(s) 495, 506, 609, 865, 934, 1163
BoxI GACNNNNGTC 1 cut(s) 626
BpiI GAAGAC 1 cut(s) 1248
Bpu10I CCTNAGC 1 cut(s) 879
Bpu14I TTCGAA 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 408
BsaJI CCNNGG 4 cut(s) 74, 366, 609, 1260
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 703
Bse1I ACTGG 1 cut(s) 761
Bse3DI GCAATG 2 cut(s) 460, 589
BseBI CCWGG 4 cut(s) 610, 1254, 1262, 1276
BseDI CCNNGG 4 cut(s) 74, 366, 609, 1260
BseGI GGATG 5 cut(s) 40, 223, 241, 712, 727
BseLI CCNNNNNNNGG 2 cut(s) 76, 703
BseMI GCAATG 2 cut(s) 460, 589
BseMII CTCAG 3 cut(s) 309, 870, 993
BseNI ACTGG 1 cut(s) 761
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 3 cut(s) 481, 992, 1032
BshFI GGCC 3 cut(s) 315, 805, 886
BsiHKAI GWGCWC 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 1 cut(s) 407
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 2 cut(s) 76, 703
BsmAI GTCTC 4 cut(s) 312, 518, 634, 946
BsmBI CGTCTC 1 cut(s) 518
BsmFI GGGAC 1 cut(s) 701
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 3 cut(s) 315, 805, 886
BsoBI CYCGRG 1 cut(s) 548
Bsp119I TTCGAA 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 438
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 7 cut(s) 178, 253, 344, 544, 614, 926, 1307
Bsp19I CCATGG 1 cut(s) 366
BspANI GGCC 3 cut(s) 315, 805, 886
BspCNI CTCAG 3 cut(s) 310, 871, 994
BspLI GGNNCC 3 cut(s) 885, 1258, 1280
BspPI GGATC 3 cut(s) 539, 622, 934
BspT104I TTCGAA 1 cut(s) 301
BspTI CTTAAG 1 cut(s) 590
BsrDI GCAATG 2 cut(s) 460, 589
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 1 cut(s) 761
BssECI CCNNGG 4 cut(s) 74, 366, 609, 1260
BssMI GATC 7 cut(s) 178, 253, 344, 544, 614, 926, 1307
BssT1I CCWWGG 2 cut(s) 74, 366
Bst2UI CCWGG 4 cut(s) 610, 1254, 1262, 1276
Bst4CI ACNGT 5 cut(s) 115, 625, 640, 826, 1090
Bst6I CTCTTC 3 cut(s) 340, 821, 988
BstAFI CTTAAG 1 cut(s) 590
BstAUI TGTACA 1 cut(s) 163
BstBI TTCGAA 1 cut(s) 301
BstC8I GCNNGC 3 cut(s) 100, 438, 1120
BstDEI CTNAG 4 cut(s) 318, 389, 879, 1002
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 5 cut(s) 40, 223, 241, 712, 727
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 7 cut(s) 181, 256, 347, 547, 617, 929, 1310
BstMAI GTCTC 4 cut(s) 312, 518, 634, 946
BstMBI GATC 7 cut(s) 178, 253, 344, 544, 614, 926, 1307
BstMWI GCNNNNNNNGC 2 cut(s) 437, 1124
BstNI CCWGG 4 cut(s) 610, 1254, 1262, 1276
BstNSI RCATGY 1 cut(s) 847
BstPAI GACNNNNGTC 1 cut(s) 626
BstSCI CCNGG 5 cut(s) 406, 608, 1252, 1260, 1274
BstSFI CTRYAG 1 cut(s) 1029
BstV1I GCAGC 3 cut(s) 481, 992, 1032
BstV2I GAAGAC 1 cut(s) 1248
BstX2I RGATCY 4 cut(s) 344, 614, 926, 1307
BstYI RGATCY 4 cut(s) 344, 614, 926, 1307
BsuRI GGCC 3 cut(s) 315, 805, 886
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 5 cut(s) 40, 223, 241, 712, 727
BtsIMutI CAGTG 3 cut(s) 174, 249, 636
Cac8I GCNNGC 3 cut(s) 100, 438, 1120
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 3 cut(s) 314, 370, 884
CseI GACGC 1 cut(s) 487
CsiI ACCWGGT 1 cut(s) 1274
Csp6I GTAC 4 cut(s) 164, 205, 587, 1026
CviAII CATG 7 cut(s) 13, 31, 232, 340, 367, 844, 863
CviQI GTAC 4 cut(s) 164, 205, 587, 1026
DdeI CTNAG 4 cut(s) 318, 389, 879, 1002
DpnI GATC 7 cut(s) 180, 255, 346, 546, 616, 928, 1309
DpnII GATC 7 cut(s) 178, 253, 344, 544, 614, 926, 1307
DraI TTTAAA 1 cut(s) 1324
Eam1104I CTCTTC 3 cut(s) 340, 821, 988
EarI CTCTTC 3 cut(s) 340, 821, 988
Eco130I CCWWGG 2 cut(s) 74, 366
Eco47I GGWCC 1 cut(s) 370
Eco57I CTGAAG 3 cut(s) 441, 909, 1260
Eco88I CYCGRG 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 884
EcoRII CCWGG 4 cut(s) 608, 1252, 1260, 1274
EcoT14I CCWWGG 2 cut(s) 74, 366
ErhI CCWWGG 2 cut(s) 74, 366
Esp3I CGTCTC 1 cut(s) 518
FaeI CATG 7 cut(s) 16, 34, 235, 343, 370, 847, 866
FalI AAGNNNNNCTT 2 cut(s) 800, 832
FaqI GGGAC 1 cut(s) 701
FatI CATG 7 cut(s) 12, 30, 231, 339, 366, 843, 862
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 3 cut(s) 495, 981, 1046
FokI GGATG 5 cut(s) 47, 230, 248, 719, 734
Fsp4HI GCNGC 3 cut(s) 495, 981, 1046
FspBI CTAG 4 cut(s) 155, 561, 618, 1016
FspI TGCGCA 1 cut(s) 468
GlaI GCGC 1 cut(s) 468
GluI GCNGC 3 cut(s) 495, 981, 1046
HaeIII GGCC 3 cut(s) 315, 805, 886
HapII CCGG 1 cut(s) 407
HgaI GACGC 1 cut(s) 487
HhaI GCGC 1 cut(s) 469
Hin1II CATG 7 cut(s) 16, 34, 235, 343, 370, 847, 866
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HincII GTYRAC 2 cut(s) 754, 1171
HindII GTYRAC 2 cut(s) 754, 1171
HindIII AAGCTT 2 cut(s) 809, 891
HinfI GANTC 6 cut(s) 320, 572, 1172, 1187, 1192, 1265
HpaI GTTAAC 1 cut(s) 754
HpaII CCGG 1 cut(s) 407
HphI GGTGA 3 cut(s) 127, 656, 1260
Hpy166II GTNNAC 3 cut(s) 477, 754, 1171
Hpy188I TCNGA 8 cut(s) 217, 421, 792, 943, 1003, 1054, 1073, 1221
Hpy188III TCNNGA 9 cut(s) 155, 257, 548, 899, 1148, 1199, 1238, 1305, 1344
Hpy8I GTNNAC 3 cut(s) 477, 754, 1171
HpyAV CCTTC 2 cut(s) 275, 651
HpyCH4III ACNGT 5 cut(s) 115, 625, 640, 826, 1090
HpyCH4IV ACGT 1 cut(s) 1136
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 1124
HpyF3I CTNAG 4 cut(s) 318, 389, 879, 1002
HpySE526I ACGT 1 cut(s) 1136
Hsp92II CATG 7 cut(s) 16, 34, 235, 343, 370, 847, 866
HspAI GCGC 1 cut(s) 467
Ksp22I TGATCA 1 cut(s) 253
KspAI GTTAAC 1 cut(s) 754
Kzo9I GATC 7 cut(s) 178, 253, 344, 544, 614, 926, 1307
Lsp1109I GCAGC 3 cut(s) 481, 992, 1032
LweI GCATC 6 cut(s) 495, 506, 609, 865, 934, 1163
MabI ACCWGGT 1 cut(s) 1274
MaeI CTAG 4 cut(s) 155, 561, 618, 1016
MaeII ACGT 1 cut(s) 1136
MaeIII GTNAC 8 cut(s) 193, 247, 271, 640, 781, 1057, 1090, 1105
MalI GATC 7 cut(s) 180, 255, 346, 546, 616, 928, 1309
MboI GATC 7 cut(s) 178, 253, 344, 544, 614, 926, 1307
MboII GAAGA 5 cut(s) 204, 327, 808, 1005, 1253
MflI RGATCY 4 cut(s) 344, 614, 926, 1307
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 3 cut(s) 699, 1203, 1318
MlyI GAGTC 3 cut(s) 329, 1166, 1196
MnlI CCTC 8 cut(s) 215, 343, 514, 546, 874, 997, 1144, 1292
MseI TTAA 8 cut(s) 183, 243, 447, 591, 702, 753, 1131, 1323
MslI CAYNNNNRTG 1 cut(s) 921
MspCI CTTAAG 1 cut(s) 590
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 5 cut(s) 408, 610, 1254, 1262, 1276
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 4 cut(s) 610, 1254, 1262, 1276
MwoI GCNNNNNNNGC 2 cut(s) 437, 1124
NciI CCSGG 1 cut(s) 408
NcoI CCATGG 1 cut(s) 366
NdeII GATC 7 cut(s) 178, 253, 344, 544, 614, 926, 1307
NlaIII CATG 7 cut(s) 16, 34, 235, 343, 370, 847, 866
NlaIV GGNNCC 3 cut(s) 885, 1258, 1280
NmuCI GTSAC 4 cut(s) 247, 640, 1057, 1105
NsbI TGCGCA 1 cut(s) 468
NspI RCATGY 1 cut(s) 847
NspV TTCGAA 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 1069
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 3 cut(s) 572, 1192, 1265
PkrI GCNGC 3 cut(s) 496, 982, 1047
PleI GAGTC 3 cut(s) 328, 1166, 1195
PpsI GAGTC 3 cut(s) 328, 1166, 1195
PshAI GACNNNNGTC 1 cut(s) 626
Psp6I CCWGG 4 cut(s) 608, 1252, 1260, 1274
PspGI CCWGG 4 cut(s) 608, 1252, 1260, 1274
PspN4I GGNNCC 3 cut(s) 885, 1258, 1280
PspPI GGNCC 3 cut(s) 314, 370, 884
PsuI RGATCY 4 cut(s) 344, 614, 926, 1307
RsaI GTAC 4 cut(s) 165, 206, 588, 1027
RsaNI GTAC 4 cut(s) 164, 205, 587, 1026
RseI CAYNNNNRTG 1 cut(s) 921
SaqAI TTAA 8 cut(s) 183, 243, 447, 591, 702, 753, 1131, 1323
SatI GCNGC 3 cut(s) 495, 981, 1046
Sau3AI GATC 7 cut(s) 178, 253, 344, 544, 614, 926, 1307
Sau96I GGNCC 3 cut(s) 314, 370, 884
SchI GAGTC 3 cut(s) 329, 1166, 1196
ScrFI CCNGG 5 cut(s) 408, 610, 1254, 1262, 1276
SduI GDGCHC 1 cut(s) 438
SexAI ACCWGGT 1 cut(s) 1274
SfaNI GCATC 6 cut(s) 495, 506, 609, 865, 934, 1163
SfcI CTRYAG 1 cut(s) 1029
SfuI TTCGAA 1 cut(s) 301
SinI GGWCC 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 921
SmlI CTYRAG 2 cut(s) 383, 590
SmoI CTYRAG 2 cut(s) 383, 590
Sse9I AATT 3 cut(s) 699, 1203, 1318
SspI AATATT 2 cut(s) 871, 1068
SspMI CTAG 4 cut(s) 155, 561, 618, 1016
StyD4I CCNGG 5 cut(s) 406, 608, 1252, 1260, 1274
StyI CCWWGG 2 cut(s) 74, 366
TaaI ACNGT 5 cut(s) 115, 625, 640, 826, 1090
TaiI ACGT 1 cut(s) 1139
TaqI TCGA 4 cut(s) 301, 819, 1063, 1190
TaqII GACCGA 1 cut(s) 711
TasI AATT 3 cut(s) 699, 1203, 1318
TatI WGTACW 3 cut(s) 163, 586, 1025
TfiI GAWTC 3 cut(s) 572, 1192, 1265
Tru1I TTAA 8 cut(s) 183, 243, 447, 591, 702, 753, 1131, 1323
Tru9I TTAA 8 cut(s) 183, 243, 447, 591, 702, 753, 1131, 1323
TscAI CASTG 3 cut(s) 181, 256, 643
TseFI GTSAC 4 cut(s) 247, 640, 1057, 1105
TseI GCWGC 3 cut(s) 494, 980, 1045
Tsp45I GTSAC 4 cut(s) 247, 640, 1057, 1105
TspDTI ATGAA 5 cut(s) 80, 108, 220, 294, 723
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 3 cut(s) 181, 256, 643
Vha464I CTTAAG 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 370
XapI RAATTY 1 cut(s) 1318
XbaI TCTAGA 1 cut(s) 154
XceI RCATGY 1 cut(s) 847
XspI CTAG 4 cut(s) 155, 561, 618, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.