Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008235

Physical Location & Seq

Genomic Coordinates Forward (+)

63253554 .. 63257042

Gene Structure 3489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG379900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGAGCTTTTCACATGACATGGATGATGAATATGAGAAACTTTGCAGGAGAATGAACCCACCAAGGGTTGTAATTGATAATGAAGCCTGCAAGAATGCCACGGTGATAAGGGTTGATAGTGCTAACAAACTTGGAATACTTCTAGAAGTTGTGCAAATACTCACTGATCTTAACCTTATTGTAACCAAAGCGTACATATCTTCGGATGGTGGCTGGTTCATGGATGTTTTTAATGTCACTGATCAAGATGGAAACAAGGTTACAGATGAAGGGGTTTTGGACTATATACGAAAGTCTCTTGGCCCTGAGTCTTGCTTTGCGTCTTCCATGAGATCTGTTGGTGTTATACAATCAATGGACCATACTACACTTGAGCTAAGCGGAACCGACAGACCGGGATTGCTATCTGAAGTGAGCCGTGTGCTCGCCATTCTTAAATGCAATGTAGTGGGTGCGCAAGTGTGGACGCACAACACAAGGGCTGCATCTGTGATGCACATTACCGATGAGGAGACAGGGTTGGCTATCACTGATCCCGAGAGGTTAGCTAGTATTAAGAAATCAGTATGCAATGTACTTAAGGGCAGCATCAAATCTAAGGGGTCTAGGACTGTTGTCTCTCATACGGGCACACACCCTGAAAGAAGGCTACACCAGATGATGTTTGCAGATAGGGATTATGACCGAGTTAAAGATGAGAGTGTCTTGGATGACAAGCAAAGACCAGATGTGAATGTTGTTAATTGGTATGACAAGGACTACTCAGTGGTTACTATTCGGAGTAAAGATAGGCCAAAGCTTCTCTTCGATACAGTTTGCACTTTGACAGACATGCAGTATGTGGTTTATCATGCAAATATTGATGCTGAGGGGCCTGAAGCTTATCAGGAATACTATATCAGGCATATAGATGGATCTCCTGTGAAATCAGATGCAGAGAGACAGAGAGTGATACAATGCCTTGAAGCAGCTATTGAGAGAAGAGTATCTGAGGGTTTGAAGCTAGAACTCTGTACTACAGATAGAGTTGGGCTGCTCTCTGATGTCACCCGAATTTTTCGAGAGAATAGCCTTACTGTAACCAGAGCAGAAGTGACAACCAAAGCAGGCAAAGCTGTTAATACATTCTATGTTCGTGAGGCATCAGGCAATCCTGTTGACTCCAAAACCATAGAGTCGATTCGTCAAGAAATCGGGCAGACGATACTTAAAGTGAAAGGCACTCCCGAAGACTTCAATCCTGGTTCTCAGGAATCACCAACCAGGTTCCTCTTTGGTGGTCTGTTCAAGTCAAGATCTTTTGTGAATTTTAAACTGATTAGGTCTTATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005911 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

444

Amino Acids

49.85

Weight (kDa)

6.06

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	34 - 86	2.3e-07	ACT domain
ACT	PF01842	122 - 172	2.9e-08	ACT domain
ACT	PF01842	339 - 397	2.6e-06	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69040 AT1G69040
fragaria_vesca	FvH4_4g29340 FvH4_4g29340 FvH4_4g29340 FvH4_4g29340
malus_domestica	MD13G1056800.v1.1 MD16G1056200.v1.1
prunus_persica	Prupe.1G293100_v2.0.a1 Prupe.1G293100_v2.0.a1 Prupe.1G293100_v2.0.a1
pyrus_communis	pycom13g05070 pycom16g04920
rosa_chinensis	RchiOBHm_Chr4g0437401
rosa_laevigata	RLG00000006439
rosa_multiflora	Rmu_sc0006744.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378650
rosa_rugosa	Rorug04G0301100 Rorug04G0301200
rosa_samantha	Rh4AG355400 Rh4BG365700 Rh4CG379900
rosa_wichuraiana	Rw4G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	456
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	2 cut(s)	527, 922
AcsI	RAATTY	2 cut(s)	1053, 1306
AcuI	CTGAAG	2 cut(s)	429, 897
AfaI	GTAC	3 cut(s)	194, 576, 1015
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflII	CTTAAG	1 cut(s)	578
AgsI	TTSAA	4 cut(s)	965, 1000, 1237, 1288
AjnI	CCWGG	2 cut(s)	1240, 1262
AluBI	AGCT	8 cut(s)	6, 376, 548, 799, 881, 971, 1003, 1115
AluI	AGCT	8 cut(s)	6, 376, 548, 799, 881, 971, 1003, 1115
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	4 cut(s)	300, 506, 622, 934
AlwI	GGATC	2 cut(s)	527, 922
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	3 cut(s)	301, 791, 872
ApeKI	GCWGC	4 cut(s)	482, 585, 968, 1033
ApoI	RAATTY	2 cut(s)	1053, 1306
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	3 cut(s)	302, 358, 872
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	3 cut(s)	115, 1039, 1248
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	358
BaeGI	GKGCMC	1 cut(s)	632
BbsI	GAAGAC	2 cut(s)	315, 1236
Bbv12I	GWGCWC	1 cut(s)	426
BbvCI	CCTCAGC	1 cut(s)	867
BbvI	GCAGC	4 cut(s)	469, 597, 980, 1020
BccI	CCATC	3 cut(s)	200, 242, 905
BceAI	ACGGC	1 cut(s)	402
BciT130I	CCWGG	2 cut(s)	1242, 1264
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	4 cut(s)	300, 506, 622, 934
BfaI	CTAG	4 cut(s)	143, 549, 606, 1004
BfmI	CTRYAG	1 cut(s)	1017
BfrI	CTTAAG	1 cut(s)	578
BglII	AGATCT	2 cut(s)	332, 1295
BisI	GCNGC	4 cut(s)	483, 586, 969, 1034
BlpI	GCTNAGC	1 cut(s)	377
BlsI	GCNGC	4 cut(s)	484, 587, 970, 1035
Bme1390I	CCNGG	3 cut(s)	396, 1242, 1264
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	3 cut(s)	302, 358, 872
BmiI	GGNNCC	3 cut(s)	385, 873, 1268
BmrFI	CCNGG	3 cut(s)	396, 1242, 1264
BmsI	GCATC	6 cut(s)	483, 494, 597, 853, 922, 1151
BoxI	GACNNNNGTC	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	315, 1236
Bpu10I	CCTNAGC	1 cut(s)	867
Bpu1102I	GCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	396
BsaBI	GATNNNNATC	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	62, 99
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse3DI	GCAATG	2 cut(s)	448, 577
Bse8I	GATNNNNATC	1 cut(s)	403
BseBI	CCWGG	2 cut(s)	1242, 1264
BseDI	CCNNGG	2 cut(s)	62, 99
BseGI	GGATG	4 cut(s)	28, 211, 229, 715
BseJI	GATNNNNATC	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	2 cut(s)	448, 577
BseMII	CTCAG	5 cut(s)	297, 777, 858, 981, 1262
BseRI	GAGGAG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	4 cut(s)	469, 597, 980, 1020
BshFI	GGCC	3 cut(s)	303, 793, 874
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	4 cut(s)	300, 506, 622, 934
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	303, 793, 874
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	426, 632
Bsp143I	GATC	6 cut(s)	166, 241, 332, 532, 914, 1295
Bsp1720I	GCTNAGC	1 cut(s)	377
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	3 cut(s)	303, 793, 874
BspCNI	CTCAG	5 cut(s)	298, 776, 859, 982, 1261
BspLI	GGNNCC	3 cut(s)	385, 873, 1268
BspPI	GGATC	2 cut(s)	527, 922
BspTI	CTTAAG	1 cut(s)	578
BsrDI	GCAATG	2 cut(s)	448, 577
BssECI	CCNNGG	2 cut(s)	62, 99
BssMI	GATC	6 cut(s)	166, 241, 332, 532, 914, 1295
BssT1I	CCWWGG	1 cut(s)	62
Bst2UI	CCWGG	2 cut(s)	1242, 1264
Bst4CI	ACNGT	4 cut(s)	103, 613, 814, 1078
Bst6I	CTCTTC	2 cut(s)	809, 976
BstAFI	CTTAAG	1 cut(s)	578
BstC8I	GCNNGC	3 cut(s)	88, 426, 1108
BstDEI	CTNAG	7 cut(s)	306, 377, 597, 763, 867, 990, 1248
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	4 cut(s)	28, 211, 229, 715
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	6 cut(s)	169, 244, 335, 535, 917, 1298
BstMAI	GTCTC	4 cut(s)	300, 506, 622, 934
BstMBI	GATC	6 cut(s)	166, 241, 332, 532, 914, 1295
BstMWI	GCNNNNNNNGC	1 cut(s)	1112
BstNI	CCWGG	2 cut(s)	1242, 1264
BstNSI	RCATGY	1 cut(s)	835
BstPAI	GACNNNNGTC	1 cut(s)	614
BstSCI	CCNGG	3 cut(s)	394, 1240, 1262
BstSFI	CTRYAG	1 cut(s)	1017
BstSLI	GKGCMC	1 cut(s)	632
BstV1I	GCAGC	4 cut(s)	469, 597, 980, 1020
BstV2I	GAAGAC	2 cut(s)	315, 1236
BstX2I	RGATCY	3 cut(s)	332, 914, 1295
BstYI	RGATCY	3 cut(s)	332, 914, 1295
BsuRI	GGCC	3 cut(s)	303, 793, 874
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	4 cut(s)	28, 211, 229, 715
BtsIMutI	CAGTG	4 cut(s)	162, 237, 528, 771
Cac8I	GCNNGC	3 cut(s)	88, 426, 1108
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	3 cut(s)	302, 358, 872
CseI	GACGC	2 cut(s)	309, 475
CsiI	ACCWGGT	1 cut(s)	1262
Csp6I	GTAC	3 cut(s)	193, 575, 1014
CviAII	CATG	6 cut(s)	14, 19, 220, 328, 832, 851
CviQI	GTAC	3 cut(s)	193, 575, 1014
DdeI	CTNAG	7 cut(s)	306, 377, 597, 763, 867, 990, 1248
DpnI	GATC	6 cut(s)	168, 243, 334, 534, 916, 1297
DpnII	GATC	6 cut(s)	166, 241, 332, 532, 914, 1295
DraI	TTTAAA	1 cut(s)	1312
Eam1104I	CTCTTC	2 cut(s)	809, 976
EarI	CTCTTC	2 cut(s)	809, 976
Eco130I	CCWWGG	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	429, 897
Eco88I	CYCGRG	1 cut(s)	536
EcoO109I	RGGNCCY	1 cut(s)	872
EcoRII	CCWGG	2 cut(s)	1240, 1262
EcoT14I	CCWWGG	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	6 cut(s)	17, 22, 223, 331, 835, 854
FalI	AAGNNNNNCTT	2 cut(s)	788, 820
FatI	CATG	6 cut(s)	13, 18, 219, 327, 831, 850
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	4 cut(s)	483, 586, 969, 1034
FokI	GGATG	4 cut(s)	35, 218, 236, 722
Fsp4HI	GCNGC	4 cut(s)	483, 586, 969, 1034
FspBI	CTAG	4 cut(s)	143, 549, 606, 1004
FspI	TGCGCA	1 cut(s)	456
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	4 cut(s)	483, 586, 969, 1034
HaeIII	GGCC	3 cut(s)	303, 793, 874
HapII	CCGG	1 cut(s)	395
HgaI	GACGC	2 cut(s)	309, 475
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	6 cut(s)	17, 22, 223, 331, 835, 854
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	1159
HindII	GTYRAC	1 cut(s)	1159
HindIII	AAGCTT	2 cut(s)	797, 879
HinfI	GANTC	5 cut(s)	308, 1160, 1175, 1180, 1253
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	3 cut(s)	115, 1039, 1248
Hpy166II	GTNNAC	2 cut(s)	465, 1159
Hpy188I	TCNGA	6 cut(s)	205, 409, 780, 931, 991, 1042
Hpy8I	GTNNAC	2 cut(s)	465, 1159
HpyAV	CCTTC	2 cut(s)	263, 639
HpyCH4III	ACNGT	4 cut(s)	103, 613, 814, 1078
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1112
HpyF3I	CTNAG	7 cut(s)	306, 377, 597, 763, 867, 990, 1248
Hsp92II	CATG	6 cut(s)	17, 22, 223, 331, 835, 854
HspAI	GCGC	1 cut(s)	455
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	6 cut(s)	166, 241, 332, 532, 914, 1295
Lsp1109I	GCAGC	4 cut(s)	469, 597, 980, 1020
LweI	GCATC	6 cut(s)	483, 494, 597, 853, 922, 1151
MabI	ACCWGGT	1 cut(s)	1262
MaeI	CTAG	4 cut(s)	143, 549, 606, 1004
MaeIII	GTNAC	7 cut(s)	181, 235, 259, 769, 1045, 1078, 1093
MalI	GATC	6 cut(s)	168, 243, 334, 534, 916, 1297
MboI	GATC	6 cut(s)	166, 241, 332, 532, 914, 1295
MboII	GAAGA	5 cut(s)	192, 315, 796, 993, 1241
MflI	RGATCY	3 cut(s)	332, 914, 1295
MhlI	GDGCHC	2 cut(s)	426, 632
MluCI	AATT	4 cut(s)	72, 742, 1053, 1306
MlyI	GAGTC	3 cut(s)	317, 1154, 1184
MnlI	CCTC	6 cut(s)	502, 534, 862, 985, 1132, 1280
MslI	CAYNNNNRTG	1 cut(s)	909
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	3 cut(s)	396, 1242, 1264
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	2 cut(s)	1242, 1264
MwoI	GCNNNNNNNGC	1 cut(s)	1112
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	6 cut(s)	166, 241, 332, 532, 914, 1295
NlaIII	CATG	6 cut(s)	17, 22, 223, 331, 835, 854
NlaIV	GGNNCC	3 cut(s)	385, 873, 1268
NmuCI	GTSAC	3 cut(s)	235, 1045, 1093
NsbI	TGCGCA	1 cut(s)	456
NspI	RCATGY	1 cut(s)	835
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	1180, 1253
PkrI	GCNGC	4 cut(s)	484, 587, 970, 1035
PleI	GAGTC	3 cut(s)	316, 1154, 1183
PpsI	GAGTC	3 cut(s)	316, 1154, 1183
PshAI	GACNNNNGTC	1 cut(s)	614
Psp6I	CCWGG	2 cut(s)	1240, 1262
PspGI	CCWGG	2 cut(s)	1240, 1262
PspN4I	GGNNCC	3 cut(s)	385, 873, 1268
PspPI	GGNCC	3 cut(s)	302, 358, 872
PsuI	RGATCY	3 cut(s)	332, 914, 1295
RsaI	GTAC	3 cut(s)	194, 576, 1015
RsaNI	GTAC	3 cut(s)	193, 575, 1014
RseI	CAYNNNNRTG	1 cut(s)	909
SatI	GCNGC	4 cut(s)	483, 586, 969, 1034
Sau3AI	GATC	6 cut(s)	166, 241, 332, 532, 914, 1295
Sau96I	GGNCC	3 cut(s)	302, 358, 872
SchI	GAGTC	3 cut(s)	317, 1154, 1184
ScrFI	CCNGG	3 cut(s)	396, 1242, 1264
SduI	GDGCHC	2 cut(s)	426, 632
SexAI	ACCWGGT	1 cut(s)	1262
SfaNI	GCATC	6 cut(s)	483, 494, 597, 853, 922, 1151
SfcI	CTRYAG	1 cut(s)	1017
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	909
SmlI	CTYRAG	2 cut(s)	371, 578
SmoI	CTYRAG	2 cut(s)	371, 578
Sse9I	AATT	4 cut(s)	72, 742, 1053, 1306
SsiI	CCGC	1 cut(s)	381
SspI	AATATT	1 cut(s)	859
SspMI	CTAG	4 cut(s)	143, 549, 606, 1004
StyD4I	CCNGG	3 cut(s)	394, 1240, 1262
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	4 cut(s)	103, 613, 814, 1078
TaqI	TCGA	3 cut(s)	807, 1060, 1178
TaqII	GACCGA	1 cut(s)	699
TasI	AATT	4 cut(s)	72, 742, 1053, 1306
TatI	WGTACW	2 cut(s)	574, 1013
TfiI	GAWTC	2 cut(s)	1180, 1253
TscAI	CASTG	4 cut(s)	169, 244, 535, 771
TseFI	GTSAC	3 cut(s)	235, 1045, 1093
TseI	GCWGC	4 cut(s)	482, 585, 968, 1033
Tsp45I	GTSAC	3 cut(s)	235, 1045, 1093
TspDTI	ATGAA	5 cut(s)	42, 68, 96, 208, 282
TspRI	CASTG	4 cut(s)	169, 244, 535, 771
Vha464I	CTTAAG	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	2 cut(s)	1053, 1306
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	1 cut(s)	835
XspI	CTAG	4 cut(s)	143, 549, 606, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.