Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008235

Physical Location & Seq

Genomic Coordinates Reverse (-)

47590287 .. 47590598

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0301100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGGAAATATGTTGGCAGAGGGGGAGTTGGGCCTTTGTCTAGTTTGTTATCTCCAGAACATGGGGAGGTGTTGGCATGCAAGCATGCGTTGGAGTTCACTCGGGATCATGGTTTAATTCCAGCTATTTTGGAAACCGATGCTACGGAGGTGCAGCGTCAACTTAATGCTCAACCTTCCACAGTTCCACCAGTACTTCTGTGTTGGGCAGGATGTTTGAGGATGTTGGGTACTCTTGGGGGACCAACCCAATTTGAGGGTGAGTCATGTTGGTCAAAGAGGAAACATGGTAGCCCATCAGCTGGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005911 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

103

Amino Acids

10.96

Weight (kDa)

6.89

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69040 AT1G69040
fragaria_vesca	FvH4_4g29340 FvH4_4g29340 FvH4_4g29340 FvH4_4g29340
malus_domestica	MD13G1056800.v1.1 MD16G1056200.v1.1
prunus_persica	Prupe.1G293100_v2.0.a1 Prupe.1G293100_v2.0.a1 Prupe.1G293100_v2.0.a1
pyrus_communis	pycom13g05070 pycom16g04920
rosa_chinensis	RchiOBHm_Chr4g0437401
rosa_laevigata	RLG00000006439
rosa_multiflora	Rmu_sc0006744.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378650
rosa_rugosa	Rorug04G0301100 Rorug04G0301200
rosa_samantha	Rh4AG355400 Rh4BG365700 Rh4CG379900
rosa_wichuraiana	Rw4G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	62, 302
AclWI	GGATC	1 cut(s)	114
AfaI	GTAC	2 cut(s)	195, 232
AfiI	CCNNNNNNNGG	3 cut(s)	62, 256, 302
AluBI	AGCT	2 cut(s)	125, 302
AluI	AGCT	2 cut(s)	125, 302
AlwI	GGATC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	102
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	32, 242
AsuHPI	GGTGA	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	304
BfaI	CTAG	2 cut(s)	42, 310
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
BmcAI	AGTACT	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	32, 242
BmiI	GGNNCC	1 cut(s)	243
BmsI	GCATC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 256, 302
Bse1I	ACTGG	1 cut(s)	191
BseGI	GGATG	2 cut(s)	218, 228
BseLI	CCNNNNNNNGG	3 cut(s)	62, 256, 302
BseNI	ACTGG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	34
BsiHKCI	CYCGRG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	3 cut(s)	62, 256, 302
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	191
BssMI	GATC	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	184
BstC8I	GCNNGC	4 cut(s)	79, 83, 87, 304
BstF5I	GGATG	2 cut(s)	218, 228
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstNSI	RCATGY	2 cut(s)	81, 89
BstV1I	GCAGC	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	218, 228
Cac8I	GCNNGC	4 cut(s)	79, 83, 87, 304
Cfr13I	GGNCC	2 cut(s)	32, 242
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	194, 231
CviAII	CATG	6 cut(s)	62, 78, 86, 110, 267, 287
CviJI	RGCY	5 cut(s)	34, 125, 294, 302, 306
CviKI_1	RGCY	5 cut(s)	34, 125, 294, 302, 306
CviQI	GTAC	2 cut(s)	194, 231
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	102
FaeI	CATG	6 cut(s)	65, 81, 89, 113, 270, 290
FaiI	YATR	7 cut(s)	12, 63, 79, 87, 111, 268, 288
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	6 cut(s)	61, 77, 85, 109, 266, 286
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	2 cut(s)	225, 235
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	2 cut(s)	42, 310
GluI	GCNGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	34
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	6 cut(s)	65, 81, 89, 113, 270, 290
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	263
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	99, 161
Hpy188III	TCNNGA	2 cut(s)	56, 104
Hpy8I	GTNNAC	2 cut(s)	99, 161
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	81, 154
Hsp92II	CATG	6 cut(s)	65, 81, 89, 113, 270, 290
Kzo9I	GATC	1 cut(s)	106
LpnPI	CCDG	5 cut(s)	69, 135, 195, 204, 288
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	42, 310
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MluCI	AATT	2 cut(s)	117, 251
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	14, 61, 142, 213, 250, 273
MseI	TTAA	2 cut(s)	116, 165
MspA1I	CMGCKG	1 cut(s)	302
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	6 cut(s)	65, 81, 89, 113, 270, 290
NlaIV	GGNNCC	1 cut(s)	243
NspI	RCATGY	2 cut(s)	81, 89
PaeI	GCATGC	2 cut(s)	81, 89
PflMI	CCANNNNNTGG	2 cut(s)	62, 302
PkrI	GCNGC	1 cut(s)	156
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	32, 242
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	2 cut(s)	195, 232
RsaNI	GTAC	2 cut(s)	194, 231
SaqAI	TTAA	2 cut(s)	116, 165
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	2 cut(s)	32, 242
ScaI	AGTACT	1 cut(s)	195
SchI	GAGTC	1 cut(s)	272
SetI	ASST	5 cut(s)	72, 127, 153, 178, 304
SfaNI	GCATC	1 cut(s)	130
SinI	GGWCC	1 cut(s)	242
SphI	GCATGC	2 cut(s)	81, 89
Sse9I	AATT	2 cut(s)	117, 251
SspMI	CTAG	2 cut(s)	42, 310
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	2 cut(s)	117, 251
TatI	WGTACW	1 cut(s)	193
Tru1I	TTAA	2 cut(s)	116, 165
Tru9I	TTAA	2 cut(s)	116, 165
TseI	GCWGC	1 cut(s)	154
TspGWI	ACGGA	1 cut(s)	161
Van91I	CCANNNNNTGG	2 cut(s)	62, 302
VpaK11BI	GGWCC	1 cut(s)	242
XceI	RCATGY	2 cut(s)	81, 89
XspI	CTAG	2 cut(s)	42, 310
ZrmI	AGTACT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.