Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008235

Physical Location & Seq

Genomic Coordinates Reverse (-)

7210141 .. 7212789

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006439

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAGGTTAGCATGAGCTTTTCACATGACATGGATGATGAATATGAGAAACTTTGCAGGAGAATGAACCCACCAAGGGTTGTAATTGATAATGAATCCTGCAAGAATGCCACGGTGATAAGGGTCTGGTCACCCTTTCTATACTTTTTTTTTAATGTCACTGATCAAGATGGAAACAAGGTTACAGATGAAGGGGTTTTGGACTATATACGAAAGTCTCTTGGCCCTGAGTCTTGCTTTGCATCTTCCATGAGATCTGTCGGTGTTATACAATCAATGGACCATACTACACTTGAGCTAAGCGGAACCGACAGACCGGGGTTGCTATCTGAAGTGAGCCGTGTGCTTGCCATTCTTAAATGCAATGTAGTGGGTGCGCAAGTGTGGACGCACAACACAAGGGCTGCATCTGTGATGCACATTACCGATGAGGAGACAGGGTTGGCTATCACTGATCCCGAGAGGTTAGCTAGTATTAAGAAATCAGTATGCAATGTACTTAAGGGCAGCATCAAATCTAAGGGGTCTAGGACTGTTGTCTCTCATACGGGCACACACCCTGAAAGAAGGCTACACCAGATGATGTTTGCAGATAGGGATTATGACCGAGTTAAAGATGAGAGTGTCTTGGATGACAAGCAAAGACCAGATGTGAATGTTGTTAATTGGTATGACAAGGACTACTCAGTGGTTACTATTCGGAGTAAAGATAGGCCAAAGCTTCTCTTCGATACAGTTTGCACTTTGACAGACATGCAGTATGTGGTTTATCATGCAAATATTGATGCTGAGGGGCCTGAAGCTTATCAGGAATACTATATCAGGCATATAGATGGATCTCCTGTGAAATCAGATGCAGAGAGACAAAGAGTGATACAATGCCTTGAAGCAGCTATTGAGAGAAGAGTATCTGAGGGTTTGAAGCTAGAACTCTGTACTACAGATAGAGTTGGGCTGCTCTCTGATGTCACCCGAATTTTTCGAGAGAATAGCCTTACTGTAACCAGAGCAGAAGTGACAACCAAAGCAGGCAAAGCTGTTAATACATTCTATGTTCGTGAGGCATCAGGCAATCCTGTTGACTCCAAAACCATAGAGTCGATTCGTCAAGAAATCGGGCAGACGATACTTAAAGTGAAAGGCACTCCCGAAGACTTCAATCCTGGTTCTCAGGAATCACCAACCAGGTTCCTCTTTGGTGGTCTGTTCAAGTCAAGATCTTTTGTGAATTTTAAACTGATTAGGTCTTATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005911 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ACT ACT_6

Protein Analysis

419

Amino Acids

47.27

Weight (kDa)

6.35

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	96 - 146	2.6e-08	ACT domain
ACT	PF01842	313 - 371	2.4e-06	ACT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69040 AT1G69040
fragaria_vesca	FvH4_4g29340 FvH4_4g29340 FvH4_4g29340 FvH4_4g29340
malus_domestica	MD13G1056800.v1.1 MD16G1056200.v1.1
prunus_persica	Prupe.1G293100_v2.0.a1 Prupe.1G293100_v2.0.a1 Prupe.1G293100_v2.0.a1
pyrus_communis	pycom13g05070 pycom16g04920
rosa_chinensis	RchiOBHm_Chr4g0437401
rosa_laevigata	RLG00000006439
rosa_multiflora	Rmu_sc0006744.1_g000001
rosa_roxburghii	Rroxscaffold_5G00378650
rosa_rugosa	Rorug04G0301100 Rorug04G0301200
rosa_samantha	Rh4AG355400 Rh4BG365700 Rh4CG379900
rosa_wichuraiana	Rw4G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	378
AciI	CCGC	1 cut(s)	303
AclWI	GGATC	2 cut(s)	449, 844
AcsI	RAATTY	2 cut(s)	975, 1228
AcuI	CTGAAG	2 cut(s)	351, 819
AfaI	GTAC	2 cut(s)	498, 937
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflII	CTTAAG	1 cut(s)	500
AgsI	TTSAA	4 cut(s)	887, 922, 1159, 1210
AjnI	CCWGG	2 cut(s)	1162, 1184
AluBI	AGCT	8 cut(s)	18, 298, 470, 721, 803, 893, 925, 1037
AluI	AGCT	8 cut(s)	18, 298, 470, 721, 803, 893, 925, 1037
Alw26I	GTCTC	4 cut(s)	222, 428, 544, 856
AlwI	GGATC	2 cut(s)	449, 844
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	3 cut(s)	223, 713, 794
ApeKI	GCWGC	4 cut(s)	404, 507, 890, 955
ApoI	RAATTY	2 cut(s)	975, 1228
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	3 cut(s)	224, 280, 794
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	4 cut(s)	123, 127, 961, 1170
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	1158
BbvCI	CCTCAGC	1 cut(s)	789
BbvI	GCAGC	4 cut(s)	391, 519, 902, 942
BccI	CCATC	2 cut(s)	164, 827
BceAI	ACGGC	1 cut(s)	324
BciT130I	CCWGG	2 cut(s)	1164, 1186
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	4 cut(s)	222, 428, 544, 856
BfaI	CTAG	3 cut(s)	471, 528, 926
BfmI	CTRYAG	1 cut(s)	939
BfrI	CTTAAG	1 cut(s)	500
BglII	AGATCT	2 cut(s)	254, 1217
BisI	GCNGC	4 cut(s)	405, 508, 891, 956
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	4 cut(s)	406, 509, 892, 957
Bme1390I	CCNGG	3 cut(s)	318, 1164, 1186
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	3 cut(s)	224, 280, 794
BmiI	GGNNCC	3 cut(s)	307, 795, 1190
BmrFI	CCNGG	3 cut(s)	318, 1164, 1186
BmsI	GCATC	7 cut(s)	251, 405, 416, 519, 775, 844, 1073
BoxI	GACNNNNGTC	1 cut(s)	536
BpiI	GAAGAC	1 cut(s)	1158
Bpu10I	CCTNAGC	1 cut(s)	789
Bpu1102I	GCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	74, 111, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse3DI	GCAATG	2 cut(s)	370, 499
BseBI	CCWGG	2 cut(s)	1164, 1186
BseDI	CCNNGG	3 cut(s)	74, 111, 317
BseGI	GGATG	2 cut(s)	40, 637
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	2 cut(s)	370, 499
BseMII	CTCAG	5 cut(s)	219, 699, 780, 903, 1184
BseRI	GAGGAG	1 cut(s)	446
BseSI	GKGCMC	1 cut(s)	554
BseXI	GCAGC	4 cut(s)	391, 519, 902, 942
BshFI	GGCC	3 cut(s)	225, 715, 796
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	4 cut(s)	222, 428, 544, 856
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	225, 715, 796
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	554
Bsp143I	GATC	5 cut(s)	163, 254, 454, 836, 1217
Bsp1720I	GCTNAGC	1 cut(s)	299
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	3 cut(s)	225, 715, 796
BspCNI	CTCAG	5 cut(s)	220, 698, 781, 904, 1183
BspLI	GGNNCC	3 cut(s)	307, 795, 1190
BspPI	GGATC	2 cut(s)	449, 844
BspTI	CTTAAG	1 cut(s)	500
BsrDI	GCAATG	2 cut(s)	370, 499
BssECI	CCNNGG	3 cut(s)	74, 111, 317
BssMI	GATC	5 cut(s)	163, 254, 454, 836, 1217
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	2 cut(s)	1164, 1186
Bst4CI	ACNGT	4 cut(s)	115, 535, 736, 1000
Bst6I	CTCTTC	2 cut(s)	731, 898
BstAFI	CTTAAG	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	348, 1030
BstDEI	CTNAG	7 cut(s)	228, 299, 519, 685, 789, 912, 1170
BstDSI	CCRYGG	1 cut(s)	111
BstEII	GGTNACC	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	40, 637
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	5 cut(s)	166, 257, 457, 839, 1220
BstMAI	GTCTC	4 cut(s)	222, 428, 544, 856
BstMBI	GATC	5 cut(s)	163, 254, 454, 836, 1217
BstMWI	GCNNNNNNNGC	1 cut(s)	1034
BstNI	CCWGG	2 cut(s)	1164, 1186
BstNSI	RCATGY	1 cut(s)	757
BstPAI	GACNNNNGTC	1 cut(s)	536
BstPI	GGTNACC	1 cut(s)	129
BstSCI	CCNGG	3 cut(s)	316, 1162, 1184
BstSFI	CTRYAG	1 cut(s)	939
BstSLI	GKGCMC	1 cut(s)	554
BstV1I	GCAGC	4 cut(s)	391, 519, 902, 942
BstV2I	GAAGAC	1 cut(s)	1158
BstX2I	RGATCY	3 cut(s)	254, 836, 1217
BstYI	RGATCY	3 cut(s)	254, 836, 1217
BsuRI	GGCC	3 cut(s)	225, 715, 796
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	40, 637
BtsIMutI	CAGTG	3 cut(s)	159, 450, 693
Cac8I	GCNNGC	2 cut(s)	348, 1030
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	3 cut(s)	224, 280, 794
CseI	GACGC	1 cut(s)	397
CsiI	ACCWGGT	1 cut(s)	1184
Csp6I	GTAC	2 cut(s)	497, 936
CviAII	CATG	6 cut(s)	13, 26, 31, 250, 754, 773
CviQI	GTAC	2 cut(s)	497, 936
DdeI	CTNAG	7 cut(s)	228, 299, 519, 685, 789, 912, 1170
DpnI	GATC	5 cut(s)	165, 256, 456, 838, 1219
DpnII	GATC	5 cut(s)	163, 254, 454, 836, 1217
DraI	TTTAAA	1 cut(s)	1234
Eam1104I	CTCTTC	2 cut(s)	731, 898
EarI	CTCTTC	2 cut(s)	731, 898
Eco130I	CCWWGG	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	351, 819
Eco88I	CYCGRG	1 cut(s)	458
Eco91I	GGTNACC	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	794
EcoO65I	GGTNACC	1 cut(s)	129
EcoRII	CCWGG	2 cut(s)	1162, 1184
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	6 cut(s)	16, 29, 34, 253, 757, 776
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FatI	CATG	6 cut(s)	12, 25, 30, 249, 753, 772
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	4 cut(s)	405, 508, 891, 956
FokI	GGATG	2 cut(s)	47, 644
Fsp4HI	GCNGC	4 cut(s)	405, 508, 891, 956
FspBI	CTAG	3 cut(s)	471, 528, 926
FspI	TGCGCA	1 cut(s)	378
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	4 cut(s)	405, 508, 891, 956
HaeIII	GGCC	3 cut(s)	225, 715, 796
HapII	CCGG	1 cut(s)	317
HgaI	GACGC	1 cut(s)	397
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	6 cut(s)	16, 29, 34, 253, 757, 776
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HincII	GTYRAC	1 cut(s)	1081
HindII	GTYRAC	1 cut(s)	1081
HindIII	AAGCTT	2 cut(s)	719, 801
HinfI	GANTC	6 cut(s)	95, 230, 1082, 1097, 1102, 1175
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	4 cut(s)	123, 127, 961, 1170
Hpy166II	GTNNAC	2 cut(s)	387, 1081
Hpy188I	TCNGA	5 cut(s)	331, 702, 853, 913, 964
Hpy8I	GTNNAC	2 cut(s)	387, 1081
HpyAV	CCTTC	2 cut(s)	185, 561
HpyCH4III	ACNGT	4 cut(s)	115, 535, 736, 1000
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1034
HpyF3I	CTNAG	7 cut(s)	228, 299, 519, 685, 789, 912, 1170
Hsp92II	CATG	6 cut(s)	16, 29, 34, 253, 757, 776
HspAI	GCGC	1 cut(s)	377
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	5 cut(s)	163, 254, 454, 836, 1217
Lsp1109I	GCAGC	4 cut(s)	391, 519, 902, 942
LweI	GCATC	7 cut(s)	251, 405, 416, 519, 775, 844, 1073
MabI	ACCWGGT	1 cut(s)	1184
MaeI	CTAG	3 cut(s)	471, 528, 926
MaeIII	GTNAC	7 cut(s)	129, 157, 181, 691, 967, 1000, 1015
MalI	GATC	5 cut(s)	165, 256, 456, 838, 1219
MboI	GATC	5 cut(s)	163, 254, 454, 836, 1217
MboII	GAAGA	4 cut(s)	237, 718, 915, 1163
MflI	RGATCY	3 cut(s)	254, 836, 1217
MhlI	GDGCHC	1 cut(s)	554
MluCI	AATT	4 cut(s)	84, 664, 975, 1228
MlyI	GAGTC	3 cut(s)	239, 1076, 1106
MnlI	CCTC	6 cut(s)	424, 456, 784, 907, 1054, 1202
MseI	TTAA	9 cut(s)	153, 357, 477, 501, 612, 663, 1041, 1131, 1233
MslI	CAYNNNNRTG	1 cut(s)	831
MspCI	CTTAAG	1 cut(s)	500
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	3 cut(s)	318, 1164, 1186
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	1164, 1186
MwoI	GCNNNNNNNGC	1 cut(s)	1034
NciI	CCSGG	1 cut(s)	318
NdeII	GATC	5 cut(s)	163, 254, 454, 836, 1217
NlaIII	CATG	6 cut(s)	16, 29, 34, 253, 757, 776
NlaIV	GGNNCC	3 cut(s)	307, 795, 1190
NmuCI	GTSAC	4 cut(s)	129, 157, 967, 1015
NsbI	TGCGCA	1 cut(s)	378
NspI	RCATGY	1 cut(s)	757
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	95, 1102, 1175
PkrI	GCNGC	4 cut(s)	406, 509, 892, 957
PleI	GAGTC	3 cut(s)	238, 1076, 1105
PpsI	GAGTC	3 cut(s)	238, 1076, 1105
PshAI	GACNNNNGTC	1 cut(s)	536
Psp6I	CCWGG	2 cut(s)	1162, 1184
PspEI	GGTNACC	1 cut(s)	129
PspGI	CCWGG	2 cut(s)	1162, 1184
PspN4I	GGNNCC	3 cut(s)	307, 795, 1190
PspPI	GGNCC	3 cut(s)	224, 280, 794
PsuI	RGATCY	3 cut(s)	254, 836, 1217
RsaI	GTAC	2 cut(s)	498, 937
RsaNI	GTAC	2 cut(s)	497, 936
RseI	CAYNNNNRTG	1 cut(s)	831
SaqAI	TTAA	9 cut(s)	153, 357, 477, 501, 612, 663, 1041, 1131, 1233
SatI	GCNGC	4 cut(s)	405, 508, 891, 956
Sau3AI	GATC	5 cut(s)	163, 254, 454, 836, 1217
Sau96I	GGNCC	3 cut(s)	224, 280, 794
SchI	GAGTC	3 cut(s)	239, 1076, 1106
ScrFI	CCNGG	3 cut(s)	318, 1164, 1186
SduI	GDGCHC	1 cut(s)	554
SexAI	ACCWGGT	1 cut(s)	1184
SfaNI	GCATC	7 cut(s)	251, 405, 416, 519, 775, 844, 1073
SfcI	CTRYAG	1 cut(s)	939
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	831
SmlI	CTYRAG	2 cut(s)	293, 500
SmoI	CTYRAG	2 cut(s)	293, 500
Sse9I	AATT	4 cut(s)	84, 664, 975, 1228
SsiI	CCGC	1 cut(s)	303
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	3 cut(s)	471, 528, 926
StyD4I	CCNGG	3 cut(s)	316, 1162, 1184
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	4 cut(s)	115, 535, 736, 1000
TaqI	TCGA	3 cut(s)	729, 982, 1100
TaqII	GACCGA	1 cut(s)	621
TasI	AATT	4 cut(s)	84, 664, 975, 1228
TatI	WGTACW	2 cut(s)	496, 935
TfiI	GAWTC	3 cut(s)	95, 1102, 1175
Tru1I	TTAA	9 cut(s)	153, 357, 477, 501, 612, 663, 1041, 1131, 1233
Tru9I	TTAA	9 cut(s)	153, 357, 477, 501, 612, 663, 1041, 1131, 1233
TscAI	CASTG	3 cut(s)	166, 457, 693
TseFI	GTSAC	4 cut(s)	129, 157, 967, 1015
TseI	GCWGC	4 cut(s)	404, 507, 890, 955
Tsp45I	GTSAC	4 cut(s)	129, 157, 967, 1015
TspDTI	ATGAA	4 cut(s)	54, 80, 108, 204
TspRI	CASTG	3 cut(s)	166, 457, 693
Vha464I	CTTAAG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	2 cut(s)	975, 1228
XceI	RCATGY	1 cut(s)	757
XspI	CTAG	3 cut(s)	471, 528, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.