MD16G1056200.v1.1

ACT domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
4023408 .. 4026527
3120 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1056200.v1.1.491

Sequence Viewer

Length: 1344 bp
ATGGAAGTTAGCATGAGCTTTTCACATGACATGGATGACGAGTACGGGAAGCTCATCCGGCGAATGAACCCACCAAGGGTTGTAATCGATAACGAAGCCTGCAAGAATGCAACGGTGATAAGGGTGGACAGTGCAAACAAATATGGAATCCTTTTGGAAGTTGTACAAGTACTTACTGATCTTAACCTTATCGTGACGAAAGCCTACATATCTTCGGATGGCGGCTGGTTCATGGATGTTTTTAATGTCACTGATCACGATGGAAACAAGGTTACAGATGAAGAAGTTTTGGATTATATTCAAAAGTCTCTTGGTCCAGAGGCATGCTTTGCATCTTCAATGAGATCTGTTGGTGTGAAACAATCAATGGACAGTACTGTAATTGAGCTAACTGGAAGCGACAGACCGGGATTACTCTCCGAAGTGAGCGCTGTCCTCACCAATCACAAATGCAATGTAGTGAGTGCCGAAGTCTGGACGCACAACACAAGGGCTGCATCGGTGATGCATGTCACTGATGAGGAGACGGGGTTGGCAATTACCGACCCTCAGAGGTTAGCTAGGATTAAGGAATTACTCTGCAATGTGCTAAAGGGCAGCAACAAAGCCAGAGGAGCTAGGACTGTTGTCTCTCACGCTGTTACGCACACTGAGAGGAGGCTTCACCAAATGATGTTTGCAGATAGGGATTACGAACGAGTTCATGATGGTGTCTTGGATGACAAGCAAAGACCGGATGTGAGTGTTGTTAATTGGCATGACAAAGACTACTCGGTGGTCACGATTCGGAGCAAAGACAGGCCCAAGCTTCTCTTCGACACGGTTTGCACTTTGACAGACATGCAGTATGTGATTTTTCATGCTAGTATTGACGCTGAGGGTCCGGAAGCTTATCAGGAATACTATATCAGGCATGTAGATGGATCTCCTGTGAAATCAGATGCAGAGAGACAAAGAGTGATACAATGCCTCGAGGCGGCTATTGAGAGAAGAGTATCTGAGGGCTTGAAGCTAGAACTCTGCACTACTGACAGAGTAGGGCTGTTATCTGATGTCACTCGGATCTTTCGAGAGAACAGCCTCACCGTAACAAGAGCAGAAGTTGCAACCAAAGCAGGCAAAGCTGTGAATACATTCTATGTTCGCGATGCATCAGGCTATCCGGTTGACTCCAAGACCATAGAGTCCATCCGGCAAGTAATCGGGCAGACGATACTCAAAGTAAAAGGCAACCCTGAGGACACAAAACCTGGTTCTGAGGAATCTCCAACAAGGTTCCTCTTTGGTGGTCTCTTCAAGTCCAGATCTTTCGTCAACTTCAAGCTGATCCGGTCGTATTCTTGA

Protein Analysis

448

Amino Acids

50.11

Weight (kDa)

5.99

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACT PF01842 38 - 96 2.9e-08 ACT domain
ACT PF01842 126 - 176 9.3e-10 ACT domain
ACT PF01842 342 - 396 2.1e-06 ACT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1183
AbsI CCTCGAGG 1 cut(s) 971
AccII CGCG 1 cut(s) 1146
AccIII TCCGGA 1 cut(s) 883
AciI CCGC 2 cut(s) 222, 977
AclWI GGATC 3 cut(s) 931, 1070, 1321
AfaI GTAC 4 cut(s) 44, 165, 171, 376
AfeI AGCGCT 1 cut(s) 430
AfiI CCNNNNNNNGG 3 cut(s) 76, 474, 976
AgsI TTSAA 5 cut(s) 302, 339, 1009, 1297, 1321
AjnI CCWGG 1 cut(s) 1249
AjuI GAANNNNNNNTTGG 2 cut(s) 797, 829
Alw26I GTCTC 5 cut(s) 312, 518, 634, 943, 1295
AlwI GGATC 3 cut(s) 931, 1070, 1321
Ama87I CYCGRG 1 cut(s) 971
Aor13HI TCCGGA 1 cut(s) 883
Aor51HI AGCGCT 1 cut(s) 430
AoxI GGCC 1 cut(s) 800
ApeKI GCWGC 2 cut(s) 494, 597
Asp700I GAANNNNTTC 2 cut(s) 699, 1133
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 3 cut(s) 314, 801, 881
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 5 cut(s) 127, 430, 514, 656, 1075
AvaI CYCGRG 1 cut(s) 971
AvaII GGWCC 2 cut(s) 314, 881
AxyI CCTNAGG 1 cut(s) 1236
BbvCI CCTCAGC 1 cut(s) 876
BbvI GCAGC 2 cut(s) 481, 609
BccI CCATC 5 cut(s) 212, 254, 701, 914, 1196
BciT130I CCWGG 1 cut(s) 1251
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 408
BcoDI GTCTC 5 cut(s) 312, 518, 634, 943, 1295
BfaI CTAG 4 cut(s) 561, 618, 864, 1013
BfoI RGCGCY 1 cut(s) 432
BglII AGATCT 2 cut(s) 344, 1304
BisI GCNGC 4 cut(s) 223, 495, 598, 978
BlsI GCNGC 4 cut(s) 224, 496, 599, 979
BmcAI AGTACT 2 cut(s) 171, 376
Bme1390I CCNGG 2 cut(s) 408, 1251
Bme18I GGWCC 2 cut(s) 314, 881
BmeT110I CYCGRG 1 cut(s) 971
BmgT120I GGNCC 3 cut(s) 314, 801, 881
BmiI GGNNCC 2 cut(s) 882, 1277
BmrFI CCNGG 2 cut(s) 408, 1251
BmsI GCATC 6 cut(s) 341, 495, 506, 931, 1138, 1160
BoxI GACNNNNGTC 1 cut(s) 626
Bpu10I CCTNAGC 1 cut(s) 876
BpuMI CCSGG 1 cut(s) 408
Bsa29I ATCGAT 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 1295
BsaJI CCNNGG 1 cut(s) 74
BsaWI WCCGGW 4 cut(s) 733, 883, 1162, 1329
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 474, 976
Bse1I ACTGG 1 cut(s) 397
Bse21I CCTNAGG 1 cut(s) 1236
Bse3DI GCAATG 2 cut(s) 460, 589
BseAI TCCGGA 1 cut(s) 883
BseBI CCWGG 1 cut(s) 1251
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 7 cut(s) 40, 54, 223, 241, 724, 742, 1188
BseLI CCNNNNNNNGG 3 cut(s) 76, 474, 976
BseMI GCAATG 2 cut(s) 460, 589
BseMII CTCAG 6 cut(s) 563, 642, 867, 990, 1227, 1248
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 3 cut(s) 536, 627, 670
BseXI GCAGC 2 cut(s) 481, 609
BsgI GTGCAG 1 cut(s) 1006
Bsh1236I CGCG 1 cut(s) 1146
Bsh1285I CGRYCG 1 cut(s) 1334
BshFI GGCC 1 cut(s) 802
BshVI ATCGAT 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 1334
BsiHKCI CYCGRG 1 cut(s) 971
BsiSI CCGG 7 cut(s) 58, 407, 734, 884, 1163, 1192, 1330
BslI CCNNNNNNNGG 3 cut(s) 76, 474, 976
BsmAI GTCTC 5 cut(s) 312, 518, 634, 943, 1295
BsmBI CGTCTC 1 cut(s) 518
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 1 cut(s) 802
Bso31I GGTCTC 1 cut(s) 1295
BsoBI CYCGRG 1 cut(s) 971
Bsp13I TCCGGA 1 cut(s) 883
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 7 cut(s) 178, 253, 344, 923, 1062, 1304, 1326
Bsp68I TCGCGA 1 cut(s) 1146
BspACI CCGC 2 cut(s) 222, 977
BspANI GGCC 1 cut(s) 802
BspCNI CTCAG 6 cut(s) 562, 643, 868, 991, 1228, 1249
BspDI ATCGAT 1 cut(s) 87
BspEI TCCGGA 1 cut(s) 883
BspFNI CGCG 1 cut(s) 1146
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 2 cut(s) 882, 1277
BspPI GGATC 3 cut(s) 931, 1070, 1321
BspTNI GGTCTC 1 cut(s) 1295
BsrDI GCAATG 2 cut(s) 460, 589
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 7 cut(s) 178, 253, 344, 923, 1062, 1304, 1326
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 1251
Bst4CI ACNGT 7 cut(s) 115, 131, 374, 379, 625, 823, 1087
Bst6I CTCTTC 3 cut(s) 818, 985, 1298
BstAPI GCANNNNNTGC 2 cut(s) 329, 1103
BstAUI TGTACA 1 cut(s) 163
BstC8I GCNNGC 3 cut(s) 100, 325, 1117
BstDEI CTNAG 6 cut(s) 549, 651, 876, 999, 1236, 1257
BstF5I GGATG 7 cut(s) 40, 54, 223, 241, 724, 742, 1188
BstFNI CGCG 1 cut(s) 1146
BstH2I RGCGCY 1 cut(s) 432
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 7 cut(s) 181, 256, 347, 926, 1065, 1307, 1329
BstMAI GTCTC 5 cut(s) 312, 518, 634, 943, 1295
BstMBI GATC 7 cut(s) 178, 253, 344, 923, 1062, 1304, 1326
BstMCI CGRYCG 1 cut(s) 1334
BstMWI GCNNNNNNNGC 6 cut(s) 58, 329, 614, 1103, 1112, 1121
BstNI CCWGG 1 cut(s) 1251
BstNSI RCATGY 4 cut(s) 327, 512, 844, 917
BstPAI GACNNNNGTC 1 cut(s) 626
BstSCI CCNGG 2 cut(s) 406, 1249
BstUI CGCG 1 cut(s) 1146
BstV1I GCAGC 2 cut(s) 481, 609
BstX2I RGATCY 4 cut(s) 344, 923, 1062, 1304
BstYI RGATCY 4 cut(s) 344, 923, 1062, 1304
Bsu15I ATCGAT 1 cut(s) 87
Bsu36I CCTNAGG 1 cut(s) 1236
BsuRI GGCC 1 cut(s) 802
BsuTUI ATCGAT 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 1161
BtsCI GGATG 7 cut(s) 40, 54, 223, 241, 724, 742, 1188
BtsIMutI CAGTG 4 cut(s) 136, 249, 513, 648
BtuMI TCGCGA 1 cut(s) 1146
Cac8I GCNNGC 3 cut(s) 100, 325, 1117
CciI TCATGA 1 cut(s) 703
CfoI GCGC 1 cut(s) 431
Cfr13I GGNCC 3 cut(s) 314, 801, 881
ClaI ATCGAT 1 cut(s) 87
CseI GACGC 2 cut(s) 487, 881
CsiI ACCWGGT 1 cut(s) 1249
Csp6I GTAC 4 cut(s) 43, 164, 170, 375
CviQI GTAC 4 cut(s) 43, 164, 170, 375
DdeI CTNAG 6 cut(s) 549, 651, 876, 999, 1236, 1257
DpnI GATC 7 cut(s) 180, 255, 346, 925, 1064, 1306, 1328
DpnII GATC 7 cut(s) 178, 253, 344, 923, 1062, 1304, 1326
DrdI GACNNNNNNGTC 1 cut(s) 1183
DseDI GACNNNNNNGTC 1 cut(s) 1183
Eam1104I CTCTTC 3 cut(s) 818, 985, 1298
EarI CTCTTC 3 cut(s) 818, 985, 1298
Eco130I CCWWGG 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 1295
Eco47I GGWCC 2 cut(s) 314, 881
Eco47III AGCGCT 1 cut(s) 430
Eco81I CCTNAGG 1 cut(s) 1236
Eco88I CYCGRG 1 cut(s) 971
EcoRII CCWGG 1 cut(s) 1249
EcoT14I CCWWGG 1 cut(s) 74
EcoT22I ATGCAT 2 cut(s) 510, 1153
ErhI CCWWGG 1 cut(s) 74
Esp3I CGTCTC 1 cut(s) 518
FalI AAGNNNNNCTT 2 cut(s) 797, 829
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 4 cut(s) 223, 495, 598, 978
FokI GGATG 7 cut(s) 41, 47, 230, 248, 731, 749, 1175
Fsp4HI GCNGC 4 cut(s) 223, 495, 598, 978
FspBI CTAG 4 cut(s) 561, 618, 864, 1013
GlaI GCGC 1 cut(s) 430
GluI GCNGC 4 cut(s) 223, 495, 598, 978
HaeII RGCGCY 1 cut(s) 432
HaeIII GGCC 1 cut(s) 802
HapII CCGG 7 cut(s) 58, 407, 734, 884, 1163, 1192, 1330
HgaI GACGC 2 cut(s) 487, 881
HhaI GCGC 1 cut(s) 431
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HincII GTYRAC 2 cut(s) 1168, 1315
HindII GTYRAC 2 cut(s) 1168, 1315
HindIII AAGCTT 2 cut(s) 806, 888
HinfI GANTC 5 cut(s) 147, 784, 1169, 1184, 1262
HpaII CCGG 7 cut(s) 58, 407, 734, 884, 1163, 1192, 1330
HphI GGTGA 5 cut(s) 127, 430, 514, 656, 1075
Hpy166II GTNNAC 3 cut(s) 127, 1168, 1315
Hpy188I TCNGA 9 cut(s) 217, 421, 552, 789, 940, 1000, 1051, 1062, 1258
Hpy8I GTNNAC 3 cut(s) 127, 1168, 1315
HpyCH4III ACNGT 7 cut(s) 115, 131, 374, 379, 625, 823, 1087
HpyF10VI GCNNNNNNNGC 6 cut(s) 58, 329, 614, 1103, 1112, 1121
HpyF3I CTNAG 6 cut(s) 549, 651, 876, 999, 1236, 1257
HspAI GCGC 1 cut(s) 429
Kpn2I TCCGGA 1 cut(s) 883
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 7 cut(s) 178, 253, 344, 923, 1062, 1304, 1326
LmnI GCTCC 2 cut(s) 614, 789
Lsp1109I GCAGC 2 cut(s) 481, 609
LweI GCATC 6 cut(s) 341, 495, 506, 931, 1138, 1160
MabI ACCWGGT 1 cut(s) 1249
MaeI CTAG 4 cut(s) 561, 618, 864, 1013
MaeIII GTNAC 8 cut(s) 193, 247, 271, 511, 640, 778, 1054, 1087
MalI GATC 7 cut(s) 180, 255, 346, 925, 1064, 1306, 1328
MboI GATC 7 cut(s) 178, 253, 344, 923, 1062, 1304, 1326
MboII GAAGA 6 cut(s) 204, 293, 327, 805, 1002, 1285
MflI RGATCY 4 cut(s) 344, 923, 1062, 1304
MluCI AATT 4 cut(s) 381, 537, 572, 751
MlyI GAGTC 2 cut(s) 1163, 1193
MmeI TCCRAC 1 cut(s) 1292
Mph1103I ATGCAT 2 cut(s) 510, 1153
MroI TCCGGA 1 cut(s) 883
MroXI GAANNNNTTC 2 cut(s) 699, 1133
MseI TTAA 4 cut(s) 183, 243, 567, 750
MslI CAYNNNNRTG 2 cut(s) 708, 918
MspI CCGG 7 cut(s) 58, 407, 734, 884, 1163, 1192, 1330
MspR9I CCNGG 2 cut(s) 408, 1251
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 1 cut(s) 1251
MvnI CGCG 1 cut(s) 1146
MwoI GCNNNNNNNGC 6 cut(s) 58, 329, 614, 1103, 1112, 1121
NciI CCSGG 1 cut(s) 408
NdeII GATC 7 cut(s) 178, 253, 344, 923, 1062, 1304, 1326
NlaIV GGNNCC 2 cut(s) 882, 1277
NmuCI GTSAC 5 cut(s) 193, 247, 511, 778, 1054
NruI TCGCGA 1 cut(s) 1146
NsiI ATGCAT 2 cut(s) 510, 1153
NspI RCATGY 4 cut(s) 327, 512, 844, 917
PaeI GCATGC 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 971
PagI TCATGA 1 cut(s) 703
PcsI WCGNNNNNNNCGW 2 cut(s) 779, 1066
PctI GAATGC 1 cut(s) 112
PdmI GAANNNNTTC 2 cut(s) 699, 1133
PfeI GAWTC 3 cut(s) 147, 784, 1262
PkrI GCNGC 4 cut(s) 224, 496, 599, 979
PleI GAGTC 2 cut(s) 1163, 1192
PpsI GAGTC 2 cut(s) 1163, 1192
PshAI GACNNNNGTC 1 cut(s) 626
Psp6I CCWGG 1 cut(s) 1249
PspGI CCWGG 1 cut(s) 1249
PspN4I GGNNCC 2 cut(s) 882, 1277
PspPI GGNCC 3 cut(s) 314, 801, 881
PspXI VCTCGAGB 1 cut(s) 971
PsuI RGATCY 4 cut(s) 344, 923, 1062, 1304
RruI TCGCGA 1 cut(s) 1146
RsaI GTAC 4 cut(s) 44, 165, 171, 376
RsaNI GTAC 4 cut(s) 43, 164, 170, 375
RseI CAYNNNNRTG 2 cut(s) 708, 918
SaqAI TTAA 4 cut(s) 183, 243, 567, 750
SatI GCNGC 4 cut(s) 223, 495, 598, 978
Sau3AI GATC 7 cut(s) 178, 253, 344, 923, 1062, 1304, 1326
Sau96I GGNCC 3 cut(s) 314, 801, 881
ScaI AGTACT 2 cut(s) 171, 376
SchI GAGTC 2 cut(s) 1163, 1193
ScrFI CCNGG 2 cut(s) 408, 1251
SexAI ACCWGGT 1 cut(s) 1249
SfaNI GCATC 6 cut(s) 341, 495, 506, 931, 1138, 1160
Sfr274I CTCGAG 1 cut(s) 971
SinI GGWCC 2 cut(s) 314, 881
SlaI CTCGAG 1 cut(s) 971
SmiMI CAYNNNNRTG 2 cut(s) 708, 918
SmlI CTYRAG 1 cut(s) 971
SmoI CTYRAG 1 cut(s) 971
SphI GCATGC 1 cut(s) 327
Sse9I AATT 4 cut(s) 381, 537, 572, 751
SsiI CCGC 2 cut(s) 222, 977
SspMI CTAG 4 cut(s) 561, 618, 864, 1013
StyD4I CCNGG 2 cut(s) 406, 1249
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 7 cut(s) 115, 131, 374, 379, 625, 823, 1087
TaqI TCGA 4 cut(s) 87, 816, 972, 1069
TasI AATT 4 cut(s) 381, 537, 572, 751
TatI WGTACW 3 cut(s) 163, 169, 374
TauI GCSGC 2 cut(s) 225, 980
TfiI GAWTC 3 cut(s) 147, 784, 1262
Tru1I TTAA 4 cut(s) 183, 243, 567, 750
Tru9I TTAA 4 cut(s) 183, 243, 567, 750
TscAI CASTG 4 cut(s) 136, 256, 520, 655
TseFI GTSAC 5 cut(s) 193, 247, 511, 778, 1054
TseI GCWGC 2 cut(s) 494, 597
Tsp45I GTSAC 5 cut(s) 193, 247, 511, 778, 1054
TspDTI ATGAA 5 cut(s) 80, 220, 294, 692, 848
TspRI CASTG 4 cut(s) 136, 256, 520, 655
VpaK11BI GGWCC 2 cut(s) 314, 881
XceI RCATGY 4 cut(s) 327, 512, 844, 917
XhoI CTCGAG 1 cut(s) 971
XmnI GAANNNNTTC 2 cut(s) 699, 1133
XspI CTAG 4 cut(s) 561, 618, 864, 1013
ZrmI AGTACT 2 cut(s) 171, 376
Zsp2I ATGCAT 2 cut(s) 510, 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.