Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012468

Physical Location & Seq

Genomic Coordinates Reverse (-)

26007350 .. 26009141

Gene Structure 1792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAACCTAGAAGAGAAACCAACCATGACGGCTTCAAGGGCTTCCCCTCAAGCCGAACATCTCTACTACGTCCGGTGTAGCATCTGCAACACCATCCTCGCGGTTGGGATACCATTGAAGAGAATGCTTGACACGGTAACGGTGAAATGCGGCCATTGTGGTAACCTCTCGTTTCTCACCACAACTCCTCCTCTTCAAGGCCATGTTAGCCTCACCCTTCAGATGCAGAGCTTTGGTGGAAGTGACTATAAGAAGGGAAGCTCTTCTTCTTCCTCTTCCTCCACCTCCAGCGACCAGCCCCCATCTCCCTCACCTCCCTTTGTCGTCAAACCTCCTGAGAAGAAGCAGAGGCTCCCATCTGCATACAACCGCTTCATGAGGGATGAGATCCAACGCATCAAAAGTGCCAATCCGGAAATACCACACCGTGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCTAAGTACATACCCAACTCTCCTACTTCCATTACTTCCGGAGGCCACAACATGATCCATGGCTTGGGATTCGGTGAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010254 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048479 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

181

Amino Acids

19.72

Weight (kDa)

9.56

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	18 - 66	9e-20	YABBY, N-terminal
YABBY	PF04690	98 - 159	4.7e-31	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69180
fragaria_vesca	FvH4_4g29650
malus_domestica	MD13G1059600.v1.1 MD16G1058900.v1.1
prunus_persica	Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437891
rosa_laevigata	RLG00000006402
rosa_roxburghii	Rroxscaffold_5G00379070
rosa_rugosa	Rorug04G0305200 Rorug04G0305300 Rorug04G0305400
rosa_samantha	Rh4AG357000 Rh4BG368000 Rh4CG382000 Rh4DG362600
rosa_wichuraiana	Rw0G011560 Rw0G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	456, 523
AccII	CGCG	1 cut(s)	101
AccIII	TCCGGA	2 cut(s)	412, 497
AciI	CCGC	3 cut(s)	101, 150, 370
AclWI	GGATC	2 cut(s)	382, 508
AcoI	YGGCCR	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	203
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	3 cut(s)	197, 456, 523
AgsI	TTSAA	3 cut(s)	36, 118, 197
AluBI	AGCT	3 cut(s)	231, 261, 434
AluI	AGCT	3 cut(s)	231, 261, 434
AlwI	GGATC	2 cut(s)	382, 508
Aor13HI	TCCGGA	2 cut(s)	412, 497
AoxI	GGCC	3 cut(s)	151, 199, 502
ApeKI	GCWGC	2 cut(s)	443, 446
Asp700I	GAANNNNTTC	1 cut(s)	262
AsuHPI	GGTGA	5 cut(s)	154, 169, 205, 303, 545
BbvI	GCAGC	2 cut(s)	430, 433
BccI	CCATC	3 cut(s)	101, 310, 364
BceAI	ACGGC	1 cut(s)	45
BciVI	GTATCC	1 cut(s)	102
BfaI	CTAG	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	102
BisI	GCNGC	3 cut(s)	151, 444, 447
BlsI	GCNGC	3 cut(s)	152, 445, 448
BmiI	GGNNCC	1 cut(s)	353
BmsI	GCATC	3 cut(s)	90, 213, 405
BpmI	CTGGAG	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	517
BsaWI	WCCGGW	3 cut(s)	72, 412, 497
BsaXI	ACNNNNNCTCC	4 cut(s)	169, 172, 199, 202
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 456, 523
BseAI	TCCGGA	2 cut(s)	412, 497
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	2 cut(s)	93, 388
BseLI	CCNNNNNNNGG	3 cut(s)	197, 456, 523
BseMII	CTCAG	1 cut(s)	327
BseRI	GAGGAG	2 cut(s)	177, 180
BseXI	GCAGC	2 cut(s)	430, 433
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	3 cut(s)	153, 201, 504
BsiSI	CCGG	3 cut(s)	73, 413, 498
BslI	CCNNNNNNNGG	3 cut(s)	197, 456, 523
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	3 cut(s)	153, 201, 504
Bsp13I	TCCGGA	2 cut(s)	412, 497
Bsp143I	GATC	2 cut(s)	387, 513
Bsp19I	CCATGG	1 cut(s)	517
BspACI	CCGC	3 cut(s)	101, 150, 370
BspANI	GGCC	3 cut(s)	153, 201, 504
BspCNI	CTCAG	1 cut(s)	328
BspEI	TCCGGA	2 cut(s)	412, 497
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	382, 508
BspQI	GCTCTTC	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	2 cut(s)	387, 513
BssT1I	CCWWGG	1 cut(s)	517
Bst4CI	ACNGT	3 cut(s)	136, 142, 428
Bst6I	CTCTTC	5 cut(s)	6, 113, 198, 268, 280
BstDEI	CTNAG	2 cut(s)	336, 462
BstDSI	CCRYGG	1 cut(s)	517
BstEII	GGTNACC	1 cut(s)	161
BstENI	CCTNNNNNAGG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	93, 388
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	390, 516
BstMBI	GATC	2 cut(s)	387, 513
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 207, 440
BstPI	GGTNACC	1 cut(s)	161
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	430, 433
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	153, 201, 504
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	2 cut(s)	93, 388
BtsIMutI	CAGTG	1 cut(s)	445
CciI	TCATGA	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	5 cut(s)	25, 203, 376, 511, 518
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	2 cut(s)	336, 462
DpnI	GATC	2 cut(s)	389, 515
DpnII	GATC	2 cut(s)	387, 513
DraIII	CACNNNGTG	1 cut(s)	428
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	5 cut(s)	6, 113, 198, 268, 280
EarI	CTCTTC	5 cut(s)	6, 113, 198, 268, 280
Eco130I	CCWWGG	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	161
EcoNI	CCTNNNNNAGG	1 cut(s)	195
EcoO65I	GGTNACC	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	5 cut(s)	28, 206, 379, 514, 521
FaiI	YATR	8 cut(s)	26, 204, 249, 364, 377, 470, 512, 519
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FatI	CATG	5 cut(s)	24, 202, 375, 510, 517
Fnu4HI	GCNGC	3 cut(s)	151, 444, 447
FokI	GGATG	2 cut(s)	80, 395
Fsp4HI	GCNGC	3 cut(s)	151, 444, 447
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	3 cut(s)	151, 444, 447
GsuI	CTGGAG	1 cut(s)	271
HaeIII	GGCC	3 cut(s)	153, 201, 504
HapII	CCGG	3 cut(s)	73, 413, 498
Hin1II	CATG	5 cut(s)	28, 206, 379, 514, 521
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	1 cut(s)	528
HpaII	CCGG	3 cut(s)	73, 413, 498
HphI	GGTGA	5 cut(s)	154, 169, 205, 303, 545
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	4 cut(s)	335, 376, 413, 498
HpyAV	CCTTC	2 cut(s)	227, 247
HpyCH4III	ACNGT	3 cut(s)	136, 142, 428
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	3 cut(s)	87, 226, 362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 207, 440
HpyF3I	CTNAG	2 cut(s)	336, 462
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	28, 206, 379, 514, 521
Kpn2I	TCCGGA	2 cut(s)	412, 497
Kzo9I	GATC	2 cut(s)	387, 513
LguI	GCTCTTC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	6 cut(s)	86, 301, 308, 348, 426, 511
Lsp1109I	GCAGC	2 cut(s)	430, 433
LweI	GCATC	3 cut(s)	90, 213, 405
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	3 cut(s)	136, 161, 242
MalI	GATC	2 cut(s)	389, 515
MboI	GATC	2 cut(s)	387, 513
MboII	GAAGA	8 cut(s)	23, 130, 185, 255, 258, 261, 267, 352
MflI	RGATCY	1 cut(s)	387
MluCI	AATT	1 cut(s)	454
MmeI	TCCRAC	1 cut(s)	415
MroI	TCCGGA	2 cut(s)	412, 497
MroXI	GAANNNNTTC	1 cut(s)	262
MspI	CCGG	3 cut(s)	73, 413, 498
Mva1269I	GAATGC	1 cut(s)	129
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	38, 207, 440
NcoI	CCATGG	1 cut(s)	517
NdeII	GATC	2 cut(s)	387, 513
NlaIII	CATG	5 cut(s)	28, 206, 379, 514, 521
NlaIV	GGNNCC	1 cut(s)	353
NmuCI	GTSAC	1 cut(s)	242
PagI	TCATGA	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	268
PctI	GAATGC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	528
PflMI	CCANNNNNTGG	2 cut(s)	456, 523
PkrI	GCNGC	3 cut(s)	152, 445, 448
PspEI	GGTNACC	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SapI	GCTCTTC	1 cut(s)	268
SatI	GCNGC	3 cut(s)	151, 444, 447
Sau3AI	GATC	2 cut(s)	387, 513
SetI	ASST	9 cut(s)	9, 72, 168, 233, 263, 287, 316, 334, 436
SfaNI	GCATC	3 cut(s)	90, 213, 405
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	454
SsiI	CCGC	3 cut(s)	101, 150, 370
SspMI	CTAG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	3 cut(s)	136, 142, 428
TaiI	ACGT	1 cut(s)	72
TasI	AATT	1 cut(s)	454
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	528
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	2 cut(s)	443, 446
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	17, 364
TspRI	CASTG	1 cut(s)	445
Van91I	CCANNNNNTGG	2 cut(s)	456, 523
XagI	CCTNNNNNAGG	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	262
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.