Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00751

Orthogroup ID

OG0012468

Physical Location & Seq

Genomic Coordinates Reverse (-)

47867 .. 51282

Gene Structure 3416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G016110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGACTTGGTTCAACCATCTGAGCATCTTTGCTACGTTCGGTGCAACTTCTGCAACACCGTTCTTGCTGTTGGGCTTCCATGCAAGCGGATGATGGACACAGTGACAGTGAAATGTGGTCATTGCAGTAACCTCTCCTTTCTCACCACCAGACCTAACAATCCAATCCAGCTCCAACCAGCACCTCATCAGTGCCAGATCAATGATTACCCTACCACCTTGACTCTTCATCAGAGCTTTTCCACTGATTCAAGGAGGGGACATTCATCGTCATCATCTTCACCGACATCTCTGGAGAGTCCCTCATCCCCCAAAGCACCCTTTGTTTGTAAACCACCTGAGAAGAAACACAGGCTTCCATCTGCTTACAATCGCTTCATGAAAGAGGAGATCCAGCGGATTAAAGCAGCGAACCCAGAGATTCCACACCGTGAAGCTTTTAGTGCTGCTGCCAAAAATAGAGCTTCTTCTTCTACTTCTCTTTTTTGCCCAAGAGCAAATGAAACAAGATTAGAAGTTGATGAGGACAATGAAGTGAACAAGGCCTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010254 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048479 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

184

Amino Acids

20.5

Weight (kDa)

8.76

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	6 - 54	2e-23	YABBY, N-terminal
YABBY	PF04690	100 - 156	1.7e-29	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69180
fragaria_vesca	FvH4_4g29650
malus_domestica	MD13G1059600.v1.1 MD16G1058900.v1.1
prunus_persica	Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437891
rosa_laevigata	RLG00000006402
rosa_roxburghii	Rroxscaffold_5G00379070
rosa_rugosa	Rorug04G0305200 Rorug04G0305300 Rorug04G0305400
rosa_samantha	Rh4AG357000 Rh4BG368000 Rh4CG382000 Rh4DG362600
rosa_wichuraiana	Rw0G011560 Rw0G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	88, 397
AclWI	GGATC	1 cut(s)	385
AdeI	CACNNNGTG	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	14, 252
AjuI	GAANNNNNNNTTGG	1 cut(s)	530
AluBI	AGCT	4 cut(s)	172, 237, 437, 464
AluI	AGCT	4 cut(s)	172, 237, 437, 464
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	1 cut(s)	543
ApeKI	GCWGC	3 cut(s)	407, 446, 449
AsuHPI	GGTGA	2 cut(s)	136, 273
BbvI	GCAGC	3 cut(s)	419, 433, 436
BccI	CCATC	3 cut(s)	25, 88, 367
BisI	GCNGC	3 cut(s)	408, 447, 450
BlsI	GCNGC	3 cut(s)	409, 448, 451
BmsI	GCATC	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	546
BseGI	GGATG	2 cut(s)	96, 305
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	2 cut(s)	12, 330
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	3 cut(s)	419, 433, 436
BshFI	GGCC	1 cut(s)	545
BslFI	GGGAC	2 cut(s)	273, 285
BsmFI	GGGAC	2 cut(s)	273, 285
BsnI	GGCC	1 cut(s)	545
Bsp143I	GATC	2 cut(s)	198, 390
BspACI	CCGC	2 cut(s)	88, 397
BspANI	GGCC	1 cut(s)	545
BspCNI	CTCAG	2 cut(s)	13, 331
BspHI	TCATGA	1 cut(s)	378
BspPI	GGATC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	2 cut(s)	198, 390
BssT1I	CCWWGG	1 cut(s)	546
Bst4CI	ACNGT	4 cut(s)	61, 103, 109, 431
Bst6I	CTCTTC	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	21, 339
BstF5I	GGATG	2 cut(s)	96, 305
BstKTI	GATC	2 cut(s)	201, 393
BstMBI	GATC	2 cut(s)	198, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 443
BstV1I	GCAGC	3 cut(s)	419, 433, 436
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	545
BtsCI	GGATG	2 cut(s)	96, 305
BtsIMutI	CAGTG	4 cut(s)	108, 114, 197, 243
Cac8I	GCNNGC	1 cut(s)	86
CciI	TCATGA	1 cut(s)	378
CviAII	CATG	2 cut(s)	81, 379
CviJI	RGCY	7 cut(s)	76, 172, 237, 355, 437, 464, 545
CviKI_1	RGCY	7 cut(s)	76, 172, 237, 355, 437, 464, 545
DdeI	CTNAG	2 cut(s)	21, 339
DpnI	GATC	2 cut(s)	200, 392
DpnII	GATC	2 cut(s)	198, 390
DraIII	CACNNNGTG	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	546
Eco147I	AGGCCT	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	2 cut(s)	84, 382
FaiI	YATR	2 cut(s)	82, 380
FaqI	GGGAC	2 cut(s)	273, 285
FatI	CATG	2 cut(s)	80, 378
Fnu4HI	GCNGC	3 cut(s)	408, 447, 450
FokI	GGATG	2 cut(s)	103, 292
Fsp4HI	GCNGC	3 cut(s)	408, 447, 450
GluI	GCNGC	3 cut(s)	408, 447, 450
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	545
Hin1II	CATG	2 cut(s)	84, 382
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	4 cut(s)	223, 248, 298, 421
HphI	GGTGA	2 cut(s)	136, 273
Hpy166II	GTNNAC	2 cut(s)	332, 538
Hpy188I	TCNGA	2 cut(s)	22, 234
Hpy188III	TCNNGA	2 cut(s)	293, 379
Hpy8I	GTNNAC	2 cut(s)	332, 538
HpyCH4III	ACNGT	4 cut(s)	61, 103, 109, 431
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	4 cut(s)	45, 54, 84, 126
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 443
HpyF3I	CTNAG	2 cut(s)	21, 339
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	84, 382
Kzo9I	GATC	2 cut(s)	198, 390
LmnI	GCTCC	1 cut(s)	177
LpnPI	CCDG	9 cut(s)	163, 182, 192, 209, 278, 337, 351, 407, 429
Lsp1109I	GCAGC	3 cut(s)	419, 433, 436
LweI	GCATC	1 cut(s)	34
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	2 cut(s)	103, 128
MalI	GATC	2 cut(s)	200, 392
MboI	GATC	2 cut(s)	198, 390
MboII	GAAGA	5 cut(s)	218, 270, 355, 459, 462
MflI	RGATCY	1 cut(s)	390
MlyI	GAGTC	2 cut(s)	217, 307
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	6 cut(s)	143, 195, 249, 313, 379, 517
MseI	TTAA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	397
MwoI	GCNNNNNNNGC	2 cut(s)	51, 443
NdeII	GATC	2 cut(s)	198, 390
NlaIII	CATG	2 cut(s)	84, 382
NmuCI	GTSAC	1 cut(s)	103
PagI	TCATGA	1 cut(s)	378
PceI	AGGCCT	1 cut(s)	545
PfeI	GAWTC	2 cut(s)	248, 421
PkrI	GCNGC	3 cut(s)	409, 448, 451
PleI	GAGTC	2 cut(s)	217, 306
PpsI	GAGTC	2 cut(s)	217, 306
PsuI	RGATCY	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	3 cut(s)	408, 447, 450
Sau3AI	GATC	2 cut(s)	198, 390
SchI	GAGTC	2 cut(s)	217, 307
SfaNI	GCATC	1 cut(s)	34
SseBI	AGGCCT	1 cut(s)	545
SsiI	CCGC	2 cut(s)	88, 397
StuI	AGGCCT	1 cut(s)	545
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	4 cut(s)	61, 103, 109, 431
TaiI	ACGT	1 cut(s)	39
TfiI	GAWTC	2 cut(s)	248, 421
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	4 cut(s)	108, 114, 197, 250
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	3 cut(s)	407, 446, 449
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	6 cut(s)	218, 255, 367, 395, 516, 546
TspRI	CASTG	4 cut(s)	108, 114, 197, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.