Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012468

Physical Location & Seq

Genomic Coordinates Reverse (-)

60863369 .. 60865389

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAACCTGGAAGACAAAGTCACCATGGACTTGGTTCAACCATCTGAGCATCTTTGCTACGTTCGGTGCAACTTCTGCAACACCGTTCTTGCGGTTGGGCTTCCATGCAAGCGGATGATGGACACAGTGACAGTGAAATGTGGTCATTGCAGTAACCTCTCCTTTCTCACCACCAGACCTAACAATCCAATCCAGCTCCAACCAGCACCTCATCAGTGCCAGATCAATGATTACCCTACCACCTTGACTCTTCATCAGAGCTTTTCCACTGATTCAAGGAGGGGACATTCATCGTCATCATCGTCACCGACATCTCTGGAGAGTCCATCATCCCCCAAAGCACCCTTTGTTTGTAAACCACCTGAGAAGAAACACAGGCTTCCATCTGCTTACAATCGCTTCATGAAAGAGGAGATCCAGCGGATTAAAGCAGCGAACCCAGAGATTCCACACCGTGAAGCTTTTAGTGCTGCTGCCAAAAATTGGGCAAGGTACCCTACTCCGTCAGCAACTGCTGCATCAGATTCTGGCAGCAGTAACAAACTCAACGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010254 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048479 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

184

Amino Acids

20.39

Weight (kDa)

8.95

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	14 - 62	2e-23	YABBY, N-terminal
YABBY	PF04690	108 - 167	5.6e-33	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69180
fragaria_vesca	FvH4_4g29650
malus_domestica	MD13G1059600.v1.1 MD16G1058900.v1.1
prunus_persica	Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437891
rosa_laevigata	RLG00000006402
rosa_roxburghii	Rroxscaffold_5G00379070
rosa_rugosa	Rorug04G0305200 Rorug04G0305300 Rorug04G0305400
rosa_samantha	Rh4AG357000 Rh4BG368000 Rh4CG382000 Rh4DG362600
rosa_wichuraiana	Rw0G011560 Rw0G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	492
AccB7I	CCANNNNNTGG	1 cut(s)	483
AciI	CCGC	3 cut(s)	92, 112, 421
AclWI	GGATC	1 cut(s)	409
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	483
AgsI	TTSAA	2 cut(s)	38, 276
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	3 cut(s)	196, 261, 461
AluI	AGCT	3 cut(s)	196, 261, 461
AlwI	GGATC	1 cut(s)	409
AlwNI	CAGNNNCTG	2 cut(s)	512, 527
ApeKI	GCWGC	5 cut(s)	431, 470, 473, 515, 531
Asp718I	GGTACC	1 cut(s)	492
AsuHPI	GGTGA	3 cut(s)	13, 160, 297
BanI	GGYRCC	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	5 cut(s)	443, 457, 460, 502, 543
BccI	CCATC	4 cut(s)	49, 112, 334, 391
BciT130I	CCWGG	1 cut(s)	8
BisI	GCNGC	5 cut(s)	432, 471, 474, 516, 532
BlsI	GCNGC	5 cut(s)	433, 472, 475, 517, 533
Bme1390I	CCNGG	1 cut(s)	8
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	2 cut(s)	58, 527
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
Bse3DI	GCAATG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	120, 329
BseLI	CCNNNNNNNGG	1 cut(s)	483
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	36, 354
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	5 cut(s)	443, 457, 460, 502, 543
BshNI	GGYRCC	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	483
BsmFI	GGGAC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	222, 414
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	92, 112, 421
BspCNI	CTCAG	2 cut(s)	37, 355
BspHI	TCATGA	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	494
BspPI	GGATC	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	222, 414
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	4 cut(s)	85, 127, 133, 455
Bst6I	CTCTTC	1 cut(s)	255
BstAPI	GCANNNNNTGC	2 cut(s)	75, 515
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	45, 363
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	120, 329
BstKTI	GATC	2 cut(s)	225, 417
BstMBI	GATC	2 cut(s)	222, 414
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 467, 515
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BstV1I	GCAGC	5 cut(s)	443, 457, 460, 502, 543
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	414
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	120, 329
BtsIMutI	CAGTG	4 cut(s)	132, 138, 221, 267
Cac8I	GCNNGC	1 cut(s)	110
CaiI	CAGNNNCTG	2 cut(s)	512, 527
CciI	TCATGA	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	3 cut(s)	25, 105, 403
CviJI	RGCY	5 cut(s)	100, 196, 261, 379, 461
CviKI_1	RGCY	5 cut(s)	100, 196, 261, 379, 461
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	2 cut(s)	45, 363
DpnI	GATC	2 cut(s)	224, 416
DpnII	GATC	2 cut(s)	222, 414
DraIII	CACNNNGTG	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	3 cut(s)	28, 108, 406
FaiI	YATR	3 cut(s)	26, 106, 404
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	3 cut(s)	24, 104, 402
Fnu4HI	GCNGC	5 cut(s)	432, 471, 474, 516, 532
FokI	GGATG	2 cut(s)	127, 316
Fsp4HI	GCNGC	5 cut(s)	432, 471, 474, 516, 532
GluI	GCNGC	5 cut(s)	432, 471, 474, 516, 532
GsuI	CTGGAG	1 cut(s)	338
Hin1II	CATG	3 cut(s)	28, 108, 406
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	5 cut(s)	247, 272, 322, 445, 524
HphI	GGTGA	3 cut(s)	13, 160, 297
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	3 cut(s)	46, 258, 523
Hpy188III	TCNNGA	2 cut(s)	317, 403
Hpy8I	GTNNAC	1 cut(s)	356
HpyCH4III	ACNGT	4 cut(s)	85, 127, 133, 455
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	5 cut(s)	69, 78, 108, 150, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 467, 515
HpyF3I	CTNAG	2 cut(s)	45, 363
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	28, 108, 406
KpnI	GGTACC	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	222, 414
LmnI	GCTCC	1 cut(s)	201
Lsp1109I	GCAGC	5 cut(s)	443, 457, 460, 502, 543
LweI	GCATC	2 cut(s)	58, 527
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	5 cut(s)	19, 127, 152, 303, 536
MalI	GATC	2 cut(s)	224, 416
MboI	GATC	2 cut(s)	222, 414
MboII	GAAGA	3 cut(s)	23, 242, 379
MflI	RGATCY	1 cut(s)	414
MluCI	AATT	1 cut(s)	481
MlyI	GAGTC	2 cut(s)	241, 331
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	167, 219, 273, 403
MseI	TTAA	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	421
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	75, 467, 515
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	222, 414
NlaIII	CATG	3 cut(s)	28, 108, 406
NlaIV	GGNNCC	1 cut(s)	494
NmuCI	GTSAC	3 cut(s)	19, 127, 303
PagI	TCATGA	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PfeI	GAWTC	3 cut(s)	272, 445, 524
PflFI	GACNNNGTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	483
PkrI	GCNGC	5 cut(s)	433, 472, 475, 517, 533
PleI	GAGTC	2 cut(s)	241, 330
PpsI	GAGTC	2 cut(s)	241, 330
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	494
PstNI	CAGNNNCTG	2 cut(s)	512, 527
PsuI	RGATCY	1 cut(s)	414
PsyI	GACNNNGTC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	5 cut(s)	432, 471, 474, 516, 532
Sau3AI	GATC	2 cut(s)	222, 414
SchI	GAGTC	2 cut(s)	241, 331
ScrFI	CCNGG	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	58, 527
Sse9I	AATT	1 cut(s)	481
SsiI	CCGC	3 cut(s)	92, 112, 421
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	4 cut(s)	85, 127, 133, 455
TaiI	ACGT	1 cut(s)	63
TasI	AATT	1 cut(s)	481
TfiI	GAWTC	3 cut(s)	272, 445, 524
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	4 cut(s)	132, 138, 221, 274
TseFI	GTSAC	3 cut(s)	19, 127, 303
TseI	GCWGC	5 cut(s)	431, 470, 473, 515, 531
Tsp45I	GTSAC	3 cut(s)	19, 127, 303
TspDTI	ATGAA	5 cut(s)	17, 242, 279, 391, 419
TspGWI	ACGGA	1 cut(s)	492
TspRI	CASTG	4 cut(s)	132, 138, 221, 274
Tth111I	GACNNNGTC	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.