Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0012468

Physical Location & Seq

Genomic Coordinates Reverse (-)

4185518 .. 4187826

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1059600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGCATGGAAGAGAAAGTTACCATGGACTTCATTAATCAGCCATCTGAGAACCTTTGCTATGTTCGGTGCAACTTCTGCAACACTGTCCTTGCGGTTGGGCTTCCATGCAAAAGGTTGATGGACACAATAACTGTGAAATGTGGCCATTGCAGTAACCTTTCCTTTCTCAGCACCAGATCCCCACTCGAAGGGCAATGCCTTCCTGATCACCCTACCTCCTTGACTCTTCAGGCGGGCTGTTGCAATGACTTCAGGAAGGGCCAATCCTCCTCATCATCGTCGTCACCTGTATCAGGCAACCCACCATCCCCCAAAGCACCCTTTGTTGTCAAACCACCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGGTTCATGAAAGATGAGATCAAGCGAATCAAAGCAGCCAACCCAGAGGTTCCACATCGTGAGGCTTTTAGTGCTGCAGCCAAAAATTGGGCTAGGTACATTCCCAGTCAGTCGTCTGCAGGATCAGGTTCTGGGAGCTGCAGCAACAACAACGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010254 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048479 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

178

Amino Acids

19.27

Weight (kDa)

8.96

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	15 - 63	7.7e-22	YABBY, N-terminal
YABBY	PF04690	103 - 162	7.5e-32	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69180
fragaria_vesca	FvH4_4g29650
malus_domestica	MD13G1059600.v1.1 MD16G1058900.v1.1
prunus_persica	Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437891
rosa_laevigata	RLG00000006402
rosa_roxburghii	Rroxscaffold_5G00379070
rosa_rugosa	Rorug04G0305200 Rorug04G0305300 Rorug04G0305400
rosa_samantha	Rh4AG357000 Rh4BG368000 Rh4CG382000 Rh4DG362600
rosa_wichuraiana	Rw0G011560 Rw0G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	462
AciI	CCGC	2 cut(s)	95, 236
AclWI	GGATC	2 cut(s)	174, 505
AcoI	YGGCCR	1 cut(s)	145
AcuI	CTGAAG	2 cut(s)	215, 238
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	3 cut(s)	191, 296, 462
AluBI	AGCT	1 cut(s)	513
AluI	AGCT	1 cut(s)	513
AlwI	GGATC	2 cut(s)	174, 505
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	2 cut(s)	145, 262
ApeKI	GCWGC	5 cut(s)	410, 449, 452, 513, 516
AseI	ATTAAT	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	203, 279
BalI	TGGCCA	1 cut(s)	147
BbvI	GCAGC	5 cut(s)	422, 436, 464, 500, 528
BccI	CCATC	4 cut(s)	52, 115, 316, 370
BclI	TGATCA	1 cut(s)	208
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	3 cut(s)	450, 492, 514
BisI	GCNGC	5 cut(s)	411, 450, 453, 514, 517
BlsI	GCNGC	5 cut(s)	412, 451, 454, 515, 518
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	426
BmrI	ACTGGG	1 cut(s)	474
BmuI	ACTGGG	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 296, 462
Bse1I	ACTGG	1 cut(s)	480
Bse3DI	GCAATG	3 cut(s)	148, 203, 253
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	3 cut(s)	191, 296, 462
BseMI	GCAATG	3 cut(s)	148, 203, 253
BseMII	CTCAG	3 cut(s)	39, 184, 333
BseNI	ACTGG	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	5 cut(s)	422, 436, 464, 500, 528
BshFI	GGCC	2 cut(s)	147, 264
BslI	CCNNNNNNNGG	3 cut(s)	191, 296, 462
BsnI	GGCC	2 cut(s)	147, 264
Bsp143I	GATC	4 cut(s)	179, 208, 393, 497
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	2 cut(s)	95, 236
BspANI	GGCC	2 cut(s)	147, 264
BspCNI	CTCAG	3 cut(s)	40, 183, 334
BspHI	TCATGA	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	426
BspMAI	CTGCAG	3 cut(s)	454, 496, 518
BspPI	GGATC	2 cut(s)	174, 505
BsrDI	GCAATG	3 cut(s)	148, 203, 253
BsrI	ACTGG	1 cut(s)	480
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	4 cut(s)	179, 208, 393, 497
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	88, 136
Bst6I	CTCTTC	2 cut(s)	6, 234
BstAPI	GCANNNNNTGC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	3 cut(s)	48, 170, 342
BstDSI	CCRYGG	1 cut(s)	24
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	308
BstKTI	GATC	4 cut(s)	182, 211, 396, 500
BstMBI	GATC	4 cut(s)	179, 208, 393, 497
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 446
BstSFI	CTRYAG	3 cut(s)	450, 492, 514
BstV1I	GCAGC	5 cut(s)	422, 436, 464, 500, 528
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	147, 264
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	238
CaiI	CAGNNNCTG	1 cut(s)	506
CciI	TCATGA	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	4 cut(s)	7, 25, 108, 382
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	3 cut(s)	48, 170, 342
DpnI	GATC	4 cut(s)	181, 210, 395, 499
DpnII	GATC	4 cut(s)	179, 208, 393, 497
DraIII	CACNNNGTG	1 cut(s)	434
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	6, 234
EarI	CTCTTC	2 cut(s)	6, 234
Eco130I	CCWWGG	1 cut(s)	24
Eco57I	CTGAAG	2 cut(s)	215, 238
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	4 cut(s)	10, 28, 111, 385
FaiI	YATR	5 cut(s)	8, 26, 63, 109, 383
FatI	CATG	4 cut(s)	6, 24, 107, 381
FauI	CCCGC	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	5 cut(s)	411, 450, 453, 514, 517
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	5 cut(s)	411, 450, 453, 514, 517
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	5 cut(s)	411, 450, 453, 514, 517
HaeIII	GGCC	2 cut(s)	147, 264
Hin1II	CATG	4 cut(s)	10, 28, 111, 385
HinfI	GANTC	2 cut(s)	226, 402
HphI	GGTGA	2 cut(s)	203, 279
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	4 cut(s)	206, 256, 382, 434
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	3 cut(s)	185, 212, 253
HpyCH4III	ACNGT	2 cut(s)	88, 136
HpyCH4V	TGCA	8 cut(s)	72, 81, 111, 153, 246, 452, 494, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 446
HpyF3I	CTNAG	3 cut(s)	48, 170, 342
Hsp92II	CATG	4 cut(s)	10, 28, 111, 385
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	179, 208, 393, 497
LmnI	GCTCC	1 cut(s)	510
Lsp1109I	GCAGC	5 cut(s)	422, 436, 464, 500, 528
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	3 cut(s)	19, 155, 285
MalI	GATC	4 cut(s)	181, 210, 395, 499
MboI	GATC	4 cut(s)	179, 208, 393, 497
MboII	GAAGA	3 cut(s)	23, 221, 358
MflI	RGATCY	1 cut(s)	179
MlsI	TGGCCA	1 cut(s)	147
MluCI	AATT	1 cut(s)	460
MluNI	TGGCCA	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	5 cut(s)	229, 280, 283, 415, 430
Mox20I	TGGCCA	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	147
MseI	TTAA	1 cut(s)	36
Msp20I	TGGCCA	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	78, 446
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	4 cut(s)	179, 208, 393, 497
NlaIII	CATG	4 cut(s)	10, 28, 111, 385
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	1 cut(s)	285
PagI	TCATGA	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	402
PflMI	CCANNNNNTGG	1 cut(s)	462
PkrI	GCNGC	5 cut(s)	412, 451, 454, 515, 518
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PshBI	ATTAAT	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	262
PstI	CTGCAG	3 cut(s)	454, 496, 518
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	5 cut(s)	411, 450, 453, 514, 517
Sau3AI	GATC	4 cut(s)	179, 208, 393, 497
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	220
SfcI	CTRYAG	3 cut(s)	450, 492, 514
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	2 cut(s)	95, 236
SspMI	CTAG	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	2 cut(s)	88, 136
TaqI	TCGA	1 cut(s)	189
TasI	AATT	1 cut(s)	460
TfiI	GAWTC	1 cut(s)	402
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	5 cut(s)	410, 449, 452, 513, 516
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	3 cut(s)	22, 370, 398
TspRI	CASTG	1 cut(s)	91
Van91I	CCANNNNNTGG	1 cut(s)	462
VspI	ATTAAT	1 cut(s)	36
XagI	CCTNNNNNAGG	1 cut(s)	294
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.