Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012468

Physical Location & Seq

Genomic Coordinates Forward (+)

48145318 .. 48149676

Gene Structure 4359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0305300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGATCATGGCGTTTAAGTGGGTTCTAGTTGCAATATGGATATGGGTTTGGTCAGCTTACTTGGCTGCTACACAATCCGATGATGGGTTACTGAGGATTAGTCTAAAGAAGCATCCTTTAGACTTTAGTAGGATAAATGCTGCAAGGATCACCAATAGAGTAGTTTCTCAACAGAGAGATAATGGGGATGATCTTAAAGCTAACATTATATATTTGAAGAACTATCTTGACACCCAATTTTATGGAGAAATTGGTATTGGGACTCCCCCACAAACCTTTGCTGTTGTCTTTGATACTGGAAGCGCCAATTTTTGGGTCCCGTCATCGAGATGCATCCTTTCTATTGCTTGCTATTTTCATTCTAAATACAGGGCAACTATGTCAAGTACCTATACCAAAATTGGAATACCCTGCAAAATTCCTTATGGCTTTGGTTCCATTTCTGGCTACTTCAGTGAGGATAATGTTAAAGTTGGGGAAGTTATCGTTAAGCATCAAGAATTTGTTGAGGTTACAAGGGAAGGAGTTGTTGCATTCTTAACTGCACGGTTTGATGGGGTTTTTGGACTTGGATTTCAGGATATTTCTGTTGGTCAAGCCACACCAGTGTGGTATAACATGGTGCAACAAGGTCGTATGAGCCAGCAGATTTTCTCTATATGGCTCAACCATGATCCAAAATCACCAGTGGGAGGTGAAATTGTCTTTGGAGGATATGATTGGAGGCACTTTACGGGTGATCACACTTATGTCCCGATTTCACACAATGGATACTGGCAGATTGAGGTGGGAGATATTATTGTTGCAGACTTTTCAACAGGATTCTGCAAGGGTGGCTGTGCTGCCATTTTGGACTCAGGGACATCCTTGCTTGCCGGTCCAACTACTGTTGTGGCTCAGATCAACCATGCAATCGGAGCAGAAGGATTTGCGAGCTTGGAATGTAAAACTGTCGTTTCCACTTATGGAAATCTGATATGGGATTATATAGTATCTGGGGCACGGCCTGATGTACTGTGTGTGGATATCAGCCTATGTTCGTATGATGGATCTCGTCATGTAAACAATCATATTGAGACAGTGGTTCAGAATGGAACTCGGAAGGAGGCATCCGTTGATGAAACTCCTTTATGTACTTTGTGTGAGATGATTGCCTACTGGATTCAACTTCAACTTAGAAAACAAGTATCAAGGGAACAAGTATTTAAGCATGTGAATGAGTTGTGTGAGAAGCTTCCAAATCCTGTGCGAAGATCGTTTGTCAACTGTGATAACCTTGCAGCCATGCCAGATGTTTCCTTTGTGATTGCAAACAAAACCTTCACCCTCACTCCAGAACAGTATATACTTAAAGTTGAAGAAAAGTGTTCTACTATCTGCCTCAGCGGATTTGTTGGCTTGGATGTGCCTCCTCCACAAGGTCCACTTTGGGTTCTTGGAGCTATGTTTTTGGGTGCATACCACACGGTGTTCGACTTCGGTAATCTCAGGGTAGGATTTGCCAGAGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010254 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048479 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

504

Amino Acids

55.95

Weight (kDa)

6.07

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	79 - 502	5.7e-102	Eukaryotic aspartyl protease
TAXi_N	PF14543	81 - 134	5.2e-06	Xylanase inhibitor N-terminal
SapB_2	PF03489	314 - 346	3.5e-09	Saposin-like type B, region 2
SapB_1	PF05184	376 - 413	2.7e-07	Saposin-like type B, region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69180
fragaria_vesca	FvH4_4g29650
malus_domestica	MD13G1059600.v1.1 MD16G1058900.v1.1
prunus_persica	Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437891
rosa_laevigata	RLG00000006402
rosa_roxburghii	Rroxscaffold_5G00379070
rosa_rugosa	Rorug04G0305200 Rorug04G0305300 Rorug04G0305400
rosa_samantha	Rh4AG357000 Rh4BG368000 Rh4CG382000 Rh4DG362600
rosa_wichuraiana	Rw0G011560 Rw0G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	312
AciI	CCGC	1 cut(s)	1386
AclWI	GGATC	3 cut(s)	155, 668, 1057
AcsI	RAATTY	2 cut(s)	417, 500
AcuI	CTGAAG	1 cut(s)	436
AdeI	CACNNNGTG	1 cut(s)	1468
AfaI	GTAC	3 cut(s)	388, 1014, 1135
AfiI	CCNNNNNNNGG	4 cut(s)	84, 312, 692, 1418
AgsI	TTSAA	5 cut(s)	217, 816, 1166, 1172, 1358
AjuI	GAANNNNNNNTTGG	4 cut(s)	240, 272, 690, 722
AleI	CACNNNNGTG	2 cut(s)	605, 607
AluBI	AGCT	6 cut(s)	56, 200, 936, 1234, 1442, 1508
AluI	AGCT	6 cut(s)	56, 200, 936, 1234, 1442, 1508
Alw26I	GTCTC	1 cut(s)	1070
AlwI	GGATC	3 cut(s)	155, 668, 1057
AoxI	GGCC	1 cut(s)	1004
ApeKI	GCWGC	5 cut(s)	65, 140, 842, 1280, 1508
ApoI	RAATTY	2 cut(s)	417, 500
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	3 cut(s)	316, 878, 1421
AsuHPI	GGTGA	5 cut(s)	142, 675, 707, 749, 1315
AvaII	GGWCC	3 cut(s)	316, 878, 1421
BaeGI	GKGCMC	1 cut(s)	1003
BbvCI	CCTCAGC	1 cut(s)	1382
BbvI	GCAGC	5 cut(s)	52, 127, 829, 1292, 1495
BccI	CCATC	3 cut(s)	77, 548, 1040
BceAI	ACGGC	1 cut(s)	1019
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciVI	GTATCC	1 cut(s)	764
BclI	TGATCA	2 cut(s)	3, 739
BcoDI	GTCTC	1 cut(s)	1070
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	764
BisI	GCNGC	5 cut(s)	66, 141, 843, 1281, 1509
BlsI	GCNGC	5 cut(s)	67, 142, 844, 1282, 1510
Bme18I	GGWCC	3 cut(s)	316, 878, 1421
BmgT120I	GGNCC	3 cut(s)	316, 878, 1421
BmiI	GGNNCC	3 cut(s)	317, 318, 436
BmsI	GCATC	5 cut(s)	121, 320, 342, 502, 1118
BpmI	CTGGAG	1 cut(s)	1317
Bpu10I	CCTNAGC	1 cut(s)	1382
BsaXI	ACNNNNNCTCC	2 cut(s)	1315, 1345
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 312, 692, 1418
Bse118I	RCCGGY	1 cut(s)	875
Bse1I	ACTGG	5 cut(s)	301, 605, 686, 779, 1163
BseGI	GGATG	6 cut(s)	112, 193, 333, 863, 1109, 1408
BseLI	CCNNNNNNNGG	4 cut(s)	84, 312, 692, 1418
BseMII	CTCAG	5 cut(s)	83, 870, 911, 1396, 1501
BseNI	ACTGG	5 cut(s)	301, 605, 686, 779, 1163
BseRI	GAGGAG	1 cut(s)	1401
BseSI	GKGCMC	1 cut(s)	1003
BseXI	GCAGC	5 cut(s)	52, 127, 829, 1292, 1495
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	1 cut(s)	1006
BsiSI	CCGG	1 cut(s)	876
BslFI	GGGAC	4 cut(s)	274, 302, 737, 874
BslI	CCNNNNNNNGG	4 cut(s)	84, 312, 692, 1418
BsmAI	GTCTC	1 cut(s)	1070
BsmFI	GGGAC	4 cut(s)	274, 302, 737, 874
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	1006
Bsp1286I	GDGCHC	1 cut(s)	1003
Bsp143I	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
BspACI	CCGC	1 cut(s)	1386
BspANI	GGCC	1 cut(s)	1006
BspCNI	CTCAG	5 cut(s)	84, 869, 910, 1395, 1500
BspLI	GGNNCC	3 cut(s)	317, 318, 436
BspPI	GGATC	3 cut(s)	155, 668, 1057
BsrFI	RCCGGY	1 cut(s)	875
BsrI	ACTGG	5 cut(s)	301, 605, 686, 779, 1163
BssAI	RCCGGY	1 cut(s)	875
BssMI	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
Bst4CI	ACNGT	8 cut(s)	549, 889, 952, 1017, 1081, 1268, 1341, 1468
BstC8I	GCNNGC	4 cut(s)	349, 644, 873, 934
BstDEI	CTNAG	6 cut(s)	92, 856, 897, 1175, 1382, 1487
BstENI	CCTNNNNNAGG	1 cut(s)	1416
BstF5I	GGATG	6 cut(s)	112, 193, 333, 863, 1109, 1408
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	8 cut(s)	6, 150, 193, 676, 742, 903, 1052, 1256
BstMAI	GTCTC	1 cut(s)	1070
BstMBI	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 834, 917, 1508
BstNSI	RCATGY	1 cut(s)	1214
BstSLI	GKGCMC	1 cut(s)	1003
BstV1I	GCAGC	5 cut(s)	52, 127, 829, 1292, 1495
BstX2I	RGATCY	1 cut(s)	1049
BstXI	CCANNNNNNTGG	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	1049
BsuI	GTATCC	1 cut(s)	764
BsuRI	GGCC	1 cut(s)	1006
BtsCI	GGATG	6 cut(s)	112, 193, 333, 863, 1109, 1408
BtsIMutI	CAGTG	4 cut(s)	460, 612, 693, 1086
Cac8I	GCNNGC	4 cut(s)	349, 644, 873, 934
CfoI	GCGC	1 cut(s)	305
Cfr10I	RCCGGY	1 cut(s)	875
Cfr13I	GGNCC	3 cut(s)	316, 878, 1421
Csp6I	GTAC	3 cut(s)	387, 1013, 1134
CviAII	CATG	7 cut(s)	7, 619, 671, 908, 1058, 1211, 1285
CviQI	GTAC	3 cut(s)	387, 1013, 1134
DdeI	CTNAG	6 cut(s)	92, 856, 897, 1175, 1382, 1487
DpnI	GATC	8 cut(s)	5, 149, 192, 675, 741, 902, 1051, 1255
DpnII	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
DraIII	CACNNNGTG	1 cut(s)	1468
Eco32I	GATATC	1 cut(s)	1027
Eco47I	GGWCC	3 cut(s)	316, 878, 1421
Eco57I	CTGAAG	1 cut(s)	436
EcoNI	CCTNNNNNAGG	1 cut(s)	1416
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	1027
EcoT22I	ATGCAT	1 cut(s)	335
FaeI	CATG	7 cut(s)	10, 622, 674, 911, 1061, 1214, 1288
FalI	AAGNNNNNCTT	2 cut(s)	1410, 1442
FaqI	GGGAC	4 cut(s)	274, 302, 737, 874
FatI	CATG	7 cut(s)	6, 618, 670, 907, 1057, 1210, 1284
FbaI	TGATCA	2 cut(s)	3, 739
Fnu4HI	GCNGC	5 cut(s)	66, 141, 843, 1281, 1509
FokI	GGATG	6 cut(s)	99, 200, 320, 850, 1096, 1415
Fsp4HI	GCNGC	5 cut(s)	66, 141, 843, 1281, 1509
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	5 cut(s)	66, 141, 843, 1281, 1509
GsuI	CTGGAG	1 cut(s)	1317
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	1006
HapII	CCGG	1 cut(s)	876
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	7 cut(s)	10, 622, 674, 911, 1061, 1214, 1288
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	1264
HindII	GTYRAC	1 cut(s)	1264
HindIII	AAGCTT	1 cut(s)	1232
HinfI	GANTC	4 cut(s)	262, 822, 854, 1162
HpaII	CCGG	1 cut(s)	876
HphI	GGTGA	5 cut(s)	142, 675, 707, 749, 1315
Hpy166II	GTNNAC	3 cut(s)	1063, 1264, 1424
Hpy188I	TCNGA	6 cut(s)	79, 900, 917, 975, 1089, 1101
Hpy188III	TCNNGA	6 cut(s)	227, 327, 497, 578, 754, 1334
Hpy8I	GTNNAC	3 cut(s)	1063, 1264, 1424
HpyAV	CCTTC	4 cut(s)	515, 917, 1096, 1330
HpyCH4III	ACNGT	8 cut(s)	549, 889, 952, 1017, 1081, 1268, 1341, 1468
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 834, 917, 1508
HpyF3I	CTNAG	6 cut(s)	92, 856, 897, 1175, 1382, 1487
Hsp92II	CATG	7 cut(s)	10, 622, 674, 911, 1061, 1214, 1288
HspAI	GCGC	1 cut(s)	303
KflI	GGGWCCC	1 cut(s)	316
Ksp22I	TGATCA	2 cut(s)	3, 739
Kzo9I	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
LmnI	GCTCC	2 cut(s)	917, 1439
Lsp1109I	GCAGC	5 cut(s)	52, 127, 829, 1292, 1495
LweI	GCATC	5 cut(s)	121, 320, 342, 502, 1118
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	87, 511
MalI	GATC	8 cut(s)	5, 149, 192, 675, 741, 902, 1051, 1255
MboI	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
MboII	GAAGA	3 cut(s)	229, 1263, 1370
MflI	RGATCY	1 cut(s)	1049
MhlI	GDGCHC	1 cut(s)	1003
MluCI	AATT	7 cut(s)	236, 249, 307, 399, 417, 500, 699
MlyI	GAGTC	2 cut(s)	256, 848
MmeI	TCCRAC	1 cut(s)	905
Mph1103I	ATGCAT	1 cut(s)	335
MseI	TTAA	7 cut(s)	15, 195, 468, 489, 539, 1206, 1350
MslI	CAYNNNNRTG	5 cut(s)	328, 605, 607, 747, 1215
MspA1I	CMGCKG	1 cut(s)	1386
MspI	CCGG	1 cut(s)	876
Mva1269I	GAATGC	1 cut(s)	533
MwoI	GCNNNNNNNGC	4 cut(s)	62, 834, 917, 1508
NdeII	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
NlaIII	CATG	7 cut(s)	10, 622, 674, 911, 1061, 1214, 1288
NlaIV	GGNNCC	3 cut(s)	317, 318, 436
NsiI	ATGCAT	1 cut(s)	335
NspI	RCATGY	1 cut(s)	1214
OliI	CACNNNNGTG	2 cut(s)	605, 607
PctI	GAATGC	1 cut(s)	533
PfeI	GAWTC	2 cut(s)	822, 1162
PflMI	CCANNNNNTGG	1 cut(s)	312
PkrI	GCNGC	5 cut(s)	67, 142, 844, 1282, 1510
PleI	GAGTC	2 cut(s)	256, 848
PpsI	GAGTC	2 cut(s)	256, 848
PpuMI	RGGWCCY	1 cut(s)	316
Psp5II	RGGWCCY	1 cut(s)	316
PspN4I	GGNNCC	3 cut(s)	317, 318, 436
PspPI	GGNCC	3 cut(s)	316, 878, 1421
PspPPI	RGGWCCY	1 cut(s)	316
PsrI	GAACNNNNNNTAC	2 cut(s)	1329, 1361
PsuI	RGATCY	1 cut(s)	1049
RsaI	GTAC	3 cut(s)	388, 1014, 1135
RsaNI	GTAC	3 cut(s)	387, 1013, 1134
RseI	CAYNNNNRTG	5 cut(s)	328, 605, 607, 747, 1215
SaqAI	TTAA	7 cut(s)	15, 195, 468, 489, 539, 1206, 1350
SatI	GCNGC	5 cut(s)	66, 141, 843, 1281, 1509
Sau3AI	GATC	8 cut(s)	3, 147, 190, 673, 739, 900, 1049, 1253
Sau96I	GGNCC	3 cut(s)	316, 878, 1421
SchI	GAGTC	2 cut(s)	256, 848
SduI	GDGCHC	1 cut(s)	1003
SfaNI	GCATC	5 cut(s)	121, 320, 342, 502, 1118
SinI	GGWCC	3 cut(s)	316, 878, 1421
SmiMI	CAYNNNNRTG	5 cut(s)	328, 605, 607, 747, 1215
Sse9I	AATT	7 cut(s)	236, 249, 307, 399, 417, 500, 699
SsiI	CCGC	1 cut(s)	1386
SspMI	CTAG	1 cut(s)	26
TaaI	ACNGT	8 cut(s)	549, 889, 952, 1017, 1081, 1268, 1341, 1468
TaqI	TCGA	2 cut(s)	326, 1473
TasI	AATT	7 cut(s)	236, 249, 307, 399, 417, 500, 699
TatI	WGTACW	2 cut(s)	1012, 1133
TfiI	GAWTC	2 cut(s)	822, 1162
Tru1I	TTAA	7 cut(s)	15, 195, 468, 489, 539, 1206, 1350
Tru9I	TTAA	7 cut(s)	15, 195, 468, 489, 539, 1206, 1350
TscAI	CASTG	4 cut(s)	460, 612, 693, 1086
TseI	GCWGC	5 cut(s)	65, 140, 842, 1280, 1508
TspDTI	ATGAA	2 cut(s)	347, 1134
TspGWI	ACGGA	1 cut(s)	1102
TspRI	CASTG	4 cut(s)	460, 612, 693, 1086
Van91I	CCANNNNNTGG	1 cut(s)	312
VpaK11BI	GGWCC	3 cut(s)	316, 878, 1421
XagI	CCTNNNNNAGG	1 cut(s)	1416
XapI	RAATTY	2 cut(s)	417, 500
XceI	RCATGY	1 cut(s)	1214
XspI	CTAG	1 cut(s)	26
Zsp2I	ATGCAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.