Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012468

Physical Location & Seq

Genomic Coordinates Forward (+)

28896143 .. 28898315

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G290100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAACCTGGAAGAGAAAGTCACCATGGACTTGATTAATCAACCATCTGAGCATCTTTGCTATGTCCGCTGCAACTTCTGCAGCACTGTTCTTGCGGTTGGGCTTCCATTCAAACGGTTGCTGGACACTGTGACGGTGAAATGTGGTCATTGCAGCAACCTGTCGTTTCTGAGCACCAGACCTGCACTTCAAGGTCAATGCCTTTCTGATCACCCCACCTCCTTGACTCTTCAGCAGGCGGGATGCTGCAGTGAATTCAGAAAGGGCCAATCCTCATCATCATCTTCACCAATATCAAGCGAGCCATCATCCCCAAAAGCACCCTTCGTTGTCAAACCACCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGGTTCATGAAAGAAGAGATCCAGCGAATCAAAGCAGCCAACCCAGAGATCCCACATCGAGAAGCTTTTAGTGCTGCAGCAAAAAATTGGGCTAGGTACATTCCTAGTCCGTCAGCTGGATCAGATTCTGGGAGCTGCAGCAGCACTAACAACATTTTGCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010254 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048479 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

181

Amino Acids

19.7

Weight (kDa)

8.76

Isoelectric Point (pI)

61.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69180
fragaria_vesca	FvH4_4g29650
malus_domestica	MD13G1059600.v1.1 MD16G1058900.v1.1
prunus_persica	Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437891
rosa_laevigata	RLG00000006402
rosa_roxburghii	Rroxscaffold_5G00379070
rosa_rugosa	Rorug04G0305200 Rorug04G0305300 Rorug04G0305400
rosa_samantha	Rh4AG357000 Rh4BG368000 Rh4CG382000 Rh4DG362600
rosa_wichuraiana	Rw0G011560 Rw0G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AciI	CCGC	3 cut(s)	67, 95, 239
AclWI	GGATC	3 cut(s)	388, 418, 502
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	112, 191
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	3 cut(s)	440, 491, 510
AluI	AGCT	3 cut(s)	440, 491, 510
Alw21I	GWGCWC	1 cut(s)	176
AlwI	GGATC	3 cut(s)	388, 418, 502
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	254
AseI	ATTAAT	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	4 cut(s)	13, 148, 203, 279
Bbv12I	GWGCWC	1 cut(s)	176
BccI	CCATC	3 cut(s)	52, 313, 370
BciT130I	CCWGG	1 cut(s)	8
BclI	TGATCA	1 cut(s)	208
BfaI	CTAG	2 cut(s)	468, 480
BfmI	CTRYAG	4 cut(s)	79, 247, 450, 511
BfuAI	ACCTGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	2 cut(s)	61, 233
BsaJI	CCNNGG	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	248, 308
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	3 cut(s)	39, 161, 333
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	491
BsnI	GGCC	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	4 cut(s)	208, 393, 423, 494
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	67, 95, 239
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	3 cut(s)	40, 162, 334
BspHI	TCATGA	1 cut(s)	381
BspMAI	CTGCAG	4 cut(s)	83, 251, 454, 515
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	3 cut(s)	388, 418, 502
BsrDI	GCAATG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	4 cut(s)	208, 393, 423, 494
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	4 cut(s)	88, 117, 130, 136
Bst6I	CTCTTC	3 cut(s)	6, 234, 384
BstAPI	GCANNNNNTGC	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	237, 302
BstDEI	CTNAG	3 cut(s)	48, 170, 342
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	248, 308
BstKTI	GATC	4 cut(s)	211, 396, 426, 497
BstMBI	GATC	4 cut(s)	208, 393, 423, 494
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 78, 446, 516
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	6
BstSFI	CTRYAG	4 cut(s)	79, 247, 450, 511
BstX2I	RGATCY	2 cut(s)	393, 423
BstYI	RGATCY	2 cut(s)	393, 423
BsuRI	GGCC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	248, 308
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	3 cut(s)	84, 126, 256
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	237, 302
CaiI	CAGNNNCTG	1 cut(s)	503
CciI	TCATGA	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	2 cut(s)	25, 382
CviJI	RGCY	8 cut(s)	103, 267, 304, 413, 440, 467, 491, 510
CviKI_1	RGCY	8 cut(s)	103, 267, 304, 413, 440, 467, 491, 510
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	3 cut(s)	48, 170, 342
DpnI	GATC	4 cut(s)	210, 395, 425, 496
DpnII	GATC	4 cut(s)	208, 393, 423, 494
Eam1104I	CTCTTC	3 cut(s)	6, 234, 384
EarI	CTCTTC	3 cut(s)	6, 234, 384
Eco130I	CCWWGG	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	28, 385
FaiI	YATR	3 cut(s)	26, 63, 383
FatI	CATG	2 cut(s)	24, 381
FauI	CCCGC	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	208
FokI	GGATG	2 cut(s)	255, 295
FspBI	CTAG	2 cut(s)	468, 480
HaeIII	GGCC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	28, 385
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	3 cut(s)	226, 402, 500
HphI	GGTGA	4 cut(s)	13, 148, 203, 279
Hpy188I	TCNGA	5 cut(s)	49, 171, 208, 260, 499
Hpy188III	TCNNGA	2 cut(s)	382, 434
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	4 cut(s)	88, 117, 130, 136
HpyCH4V	TGCA	8 cut(s)	72, 81, 153, 185, 249, 452, 513, 535
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 78, 446, 516
HpyF3I	CTNAG	3 cut(s)	48, 170, 342
Hsp92II	CATG	2 cut(s)	28, 385
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	208, 393, 423, 494
LmnI	GCTCC	1 cut(s)	507
LweI	GCATC	2 cut(s)	61, 233
MaeI	CTAG	2 cut(s)	468, 480
MaeIII	GTNAC	2 cut(s)	19, 130
MalI	GATC	4 cut(s)	210, 395, 425, 496
MboI	GATC	4 cut(s)	208, 393, 423, 494
MboII	GAAGA	5 cut(s)	23, 221, 276, 358, 401
MflI	RGATCY	2 cut(s)	393, 423
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	2 cut(s)	254, 460
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	2 cut(s)	229, 283
MseI	TTAA	1 cut(s)	36
MspA1I	CMGCKG	2 cut(s)	69, 491
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	4 cut(s)	66, 78, 446, 516
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	4 cut(s)	208, 393, 423, 494
NlaIII	CATG	2 cut(s)	28, 385
NmuCI	GTSAC	2 cut(s)	19, 130
PagI	TCATGA	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	402, 500
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PshBI	ATTAAT	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	265
PstI	CTGCAG	4 cut(s)	83, 251, 454, 515
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	2 cut(s)	393, 423
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	4 cut(s)	208, 393, 423, 494
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	176
SfaNI	GCATC	2 cut(s)	61, 233
SfcI	CTRYAG	4 cut(s)	79, 247, 450, 511
Sse9I	AATT	2 cut(s)	254, 460
SsiI	CCGC	3 cut(s)	67, 95, 239
SspMI	CTAG	2 cut(s)	468, 480
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	4 cut(s)	88, 117, 130, 136
TaqI	TCGA	1 cut(s)	433
TasI	AATT	2 cut(s)	254, 460
TfiI	GAWTC	2 cut(s)	402, 500
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	3 cut(s)	91, 133, 256
TseFI	GTSAC	2 cut(s)	19, 130
Tsp45I	GTSAC	2 cut(s)	19, 130
TspDTI	ATGAA	3 cut(s)	17, 370, 398
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	3 cut(s)	91, 133, 256
VspI	ATTAAT	1 cut(s)	36
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	2 cut(s)	468, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.