Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012468

Physical Location & Seq

Genomic Coordinates Forward (+)

48149959 .. 48155972

Gene Structure 6014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0305400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCGGGTCAGTTGGTTCCGGTAGCCGTGACGTTGAAGCCGGCAATCCCTTTTCACGGCGGCCGGAGAGTTTTCTCCTTGGTGTCCCGGAAACTGAATACTCCATCTTCATCGAAGTTGCAACTACCAAATATCCCATCCTCCCAAACTCGACCTCTGCTTTCTTCTTCTTCTTCCTCTGTAACTGCTCCGTCCGTCCAAGTCGTCAAAGCTCTGCGGATTCGACCCAGTCCCGAATTGGGCCTTGCCTCTCTCCTCTTCGTCCTCTCCACGGCTTTTGCTGCGCTTTTCTCCCTTGCTATATTTTCCATTCCAACTATCAACGCTTTGAGAAAATTAGCAACTTCAGTGGACAAGCTATCCCATGTGGTCTCCCAGGAGGTGCCTGGAACTCTGCTTTCTCTGAAACTCTCTGGTCTTGAGGTCAATCATTTGACCAAACAGCTTACCAGTATCAGGAAAATGATTTCTGCAACTGGCTGGGGGAAGAATTCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010254 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048479 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

166

Amino Acids

17.62

Weight (kDa)

11.82

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69180
fragaria_vesca	FvH4_4g29650
malus_domestica	MD13G1059600.v1.1 MD16G1058900.v1.1
prunus_persica	Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437891
rosa_laevigata	RLG00000006402
rosa_roxburghii	Rroxscaffold_5G00379070
rosa_rugosa	Rorug04G0305200 Rorug04G0305300 Rorug04G0305400
rosa_samantha	Rh4AG357000 Rh4BG368000 Rh4CG382000 Rh4DG362600
rosa_wichuraiana	Rw0G011560 Rw0G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	382
AciI	CCGC	2 cut(s)	60, 217
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	330
AfiI	CCNNNNNNNGG	4 cut(s)	56, 239, 271, 456
AgsI	TTSAA	2 cut(s)	37, 495
AjnI	CCWGG	2 cut(s)	375, 385
AluBI	AGCT	3 cut(s)	212, 358, 445
AluI	AGCT	3 cut(s)	212, 358, 445
Alw26I	GTCTC	1 cut(s)	376
AoxI	GGCC	2 cut(s)	61, 241
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	490
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	2 cut(s)	112, 145
BceAI	ACGGC	3 cut(s)	11, 73, 288
BciT130I	CCWGG	2 cut(s)	377, 387
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	376
BisI	GCNGC	2 cut(s)	61, 282
BlsI	GCNGC	2 cut(s)	62, 283
Bme1390I	CCNGG	3 cut(s)	88, 377, 387
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	18, 384
BmrFI	CCNGG	3 cut(s)	88, 377, 387
BmrI	ACTGGG	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	3 cut(s)	78, 270, 375
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 239, 271, 456
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	3 cut(s)	228, 450, 481
BseBI	CCWGG	2 cut(s)	377, 387
BseDI	CCNNGG	3 cut(s)	78, 270, 375
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	4 cut(s)	56, 239, 271, 456
BseNI	ACTGG	3 cut(s)	228, 450, 481
BseRI	GAGGAG	1 cut(s)	245
BseX3I	CGGCCG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	480
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	63, 243
BshNI	GGYRCC	1 cut(s)	382
BsiEI	CGRYCG	1 cut(s)	64
BsiSI	CCGG	4 cut(s)	20, 41, 64, 88
BslFI	GGGAC	2 cut(s)	70, 216
BslI	CCNNNNNNNGG	4 cut(s)	56, 239, 271, 456
BsmAI	GTCTC	1 cut(s)	376
BsmFI	GGGAC	2 cut(s)	70, 216
BsnI	GGCC	2 cut(s)	63, 243
Bso31I	GGTCTC	1 cut(s)	376
BspACI	CCGC	2 cut(s)	60, 217
BspANI	GGCC	2 cut(s)	63, 243
BspLI	GGNNCC	2 cut(s)	18, 384
BspT107I	GGYRCC	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	3 cut(s)	228, 450, 481
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	3 cut(s)	78, 270, 375
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	377, 387
Bst6I	CTCTTC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	376
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	2 cut(s)	377, 387
BstSCI	CCNGG	3 cut(s)	86, 375, 385
BstV1I	GCAGC	1 cut(s)	268
BstZI	CGGCCG	1 cut(s)	61
BsuRI	GGCC	2 cut(s)	63, 243
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	241
CspCI	CAANNNNNGTGG	4 cut(s)	259, 294, 330, 365
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	9 cut(s)	26, 40, 63, 212, 243, 275, 358, 445, 480
CviKI_1	RGCY	9 cut(s)	26, 40, 63, 212, 243, 275, 358, 445, 480
EaeI	YGGCCR	1 cut(s)	61
EagI	CGGCCG	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
EclXI	CGGCCG	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	376
Eco52I	CGGCCG	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	330
EcoRI	GAATTC	1 cut(s)	490
EcoRII	CCWGG	2 cut(s)	375, 385
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	368
FaiI	YATR	2 cut(s)	302, 366
FaqI	GGGAC	2 cut(s)	70, 216
FatI	CATG	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	61, 282
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	2 cut(s)	61, 282
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	2 cut(s)	61, 282
GsaI	CCCAGC	1 cut(s)	484
HaeIII	GGCC	2 cut(s)	63, 243
HapII	CCGG	4 cut(s)	20, 41, 64, 88
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	1 cut(s)	368
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	4 cut(s)	20, 41, 64, 88
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	1 cut(s)	405
Hpy188III	TCNNGA	3 cut(s)	233, 419, 457
Hpy8I	GTNNAC	1 cut(s)	352
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	121, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	368
HspAI	GCGC	1 cut(s)	284
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	1 cut(s)	268
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	28, 181
MboII	GAAGA	7 cut(s)	99, 156, 159, 162, 165, 250, 499
MluCI	AATT	3 cut(s)	236, 335, 490
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	8 cut(s)	151, 165, 187, 259, 266, 275, 373, 415
MroNI	GCCGGC	1 cut(s)	40
MspI	CCGG	4 cut(s)	20, 41, 64, 88
MspR9I	CCNGG	3 cut(s)	88, 377, 387
MvaI	CCWGG	2 cut(s)	377, 387
MwoI	GCNNNNNNNGC	1 cut(s)	281
NaeI	GCCGGC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	88
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	368
NlaIV	GGNNCC	2 cut(s)	18, 384
NmuCI	GTSAC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	220
PflFI	GACNNNGTC	1 cut(s)	228
PfoI	TCCNGGA	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	62, 283
Psp6I	CCWGG	2 cut(s)	375, 385
PspFI	CCCAGC	1 cut(s)	480
PspGI	CCWGG	2 cut(s)	375, 385
PspN4I	GGNNCC	2 cut(s)	18, 384
PspPI	GGNCC	1 cut(s)	241
PsyI	GACNNNGTC	1 cut(s)	228
SatI	GCNGC	2 cut(s)	61, 282
Sau96I	GGNCC	1 cut(s)	241
ScrFI	CCNGG	3 cut(s)	88, 377, 387
SetI	ASST	7 cut(s)	35, 157, 214, 360, 384, 426, 447
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	3 cut(s)	236, 335, 490
SsiI	CCGC	2 cut(s)	60, 217
StyD4I	CCNGG	3 cut(s)	86, 375, 385
StyI	CCWWGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	3 cut(s)	113, 151, 223
TasI	AATT	3 cut(s)	236, 335, 490
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	220
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	2 cut(s)	180, 184
TspRI	CASTG	1 cut(s)	354
Tth111I	GACNNNGTC	1 cut(s)	228
XapI	RAATTY	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	2 cut(s)	235, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.