Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0012468

Physical Location & Seq

Genomic Coordinates Forward (+)

6785991 .. 6787238

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006402

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAACCCGGAAGACAAAGTCACCATGGACTTGGTTCAACCATCTGAGCATCTTTGCTACGTTCGGTGCAACTTCTGCAACACCGTTCTTGCGGTTGGGCTTCCATGCAAGCGGATGATGGACACAGTGACAGTGAAATGCGGTCATTGCAGTAACCTCTCCTTTCTCACCACCAGACCTAACAATCCAATCCAGCTCCAACCAGCACCTCATCAGTGCCAGATCAATGATTACCCTACCACCTTGACTCTTCATCAGAGCTTTTCCACTGATTCAATGAGGGGACATTCATCGTCATCATCGTCACCGACATCTCTGGAGAGTCCATCATCCCCCAAAGCACCCTTTGTTTGTAAACCACCTGAGAAGAAACACAGGCTTCCATCTGCTTACAATCGCTTCATGAAAGAGGAGATCCAGCGGATTAAAGCAGCGAACCCAGAGATTCCACACCGTGAAGCTTTTAGTGCTGCTGCCAAAAATGTAAGGTTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010254 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048479 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

166

Amino Acids

18.44

Weight (kDa)

8.98

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	14 - 62	1.6e-23	YABBY, N-terminal
YABBY	PF04690	108 - 161	1.8e-28	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69180
fragaria_vesca	FvH4_4g29650
malus_domestica	MD13G1059600.v1.1 MD16G1058900.v1.1
prunus_persica	Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437891
rosa_laevigata	RLG00000006402
rosa_roxburghii	Rroxscaffold_5G00379070
rosa_rugosa	Rorug04G0305200 Rorug04G0305300 Rorug04G0305400
rosa_samantha	Rh4AG357000 Rh4BG368000 Rh4CG382000 Rh4DG362600
rosa_wichuraiana	Rw0G011560 Rw0G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	92, 112, 141, 421
AclWI	GGATC	1 cut(s)	409
AdeI	CACNNNGTG	1 cut(s)	455
AgsI	TTSAA	2 cut(s)	38, 276
AluBI	AGCT	3 cut(s)	196, 261, 461
AluI	AGCT	3 cut(s)	196, 261, 461
AlwI	GGATC	1 cut(s)	409
ApeKI	GCWGC	3 cut(s)	431, 470, 473
AsuC2I	CCSGG	1 cut(s)	8
AsuHPI	GGTGA	3 cut(s)	13, 160, 297
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	443, 457, 460
BccI	CCATC	4 cut(s)	49, 112, 334, 391
BcnI	CCSGG	1 cut(s)	8
BisI	GCNGC	3 cut(s)	432, 471, 474
BlsI	GCNGC	3 cut(s)	433, 472, 475
Bme1390I	CCNGG	1 cut(s)	8
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	120, 329
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	36, 354
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	3 cut(s)	443, 457, 460
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	222, 414
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	4 cut(s)	92, 112, 141, 421
BspCNI	CTCAG	2 cut(s)	37, 355
BspHI	TCATGA	1 cut(s)	402
BspPI	GGATC	1 cut(s)	409
BsrDI	GCAATG	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	222, 414
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	4 cut(s)	85, 127, 133, 455
Bst6I	CTCTTC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	45, 363
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	120, 329
BstKTI	GATC	2 cut(s)	225, 417
BstMBI	GATC	2 cut(s)	222, 414
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 147, 467
BstSCI	CCNGG	1 cut(s)	6
BstV1I	GCAGC	3 cut(s)	443, 457, 460
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	414
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	120, 329
BtsIMutI	CAGTG	4 cut(s)	132, 138, 221, 267
Cac8I	GCNNGC	1 cut(s)	110
CciI	TCATGA	1 cut(s)	402
CviAII	CATG	3 cut(s)	25, 105, 403
CviJI	RGCY	5 cut(s)	100, 196, 261, 379, 461
CviKI_1	RGCY	5 cut(s)	100, 196, 261, 379, 461
DdeI	CTNAG	2 cut(s)	45, 363
DpnI	GATC	2 cut(s)	224, 416
DpnII	GATC	2 cut(s)	222, 414
DraIII	CACNNNGTG	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	3 cut(s)	28, 108, 406
FaiI	YATR	3 cut(s)	26, 106, 404
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	3 cut(s)	24, 104, 402
Fnu4HI	GCNGC	3 cut(s)	432, 471, 474
FokI	GGATG	2 cut(s)	127, 316
Fsp4HI	GCNGC	3 cut(s)	432, 471, 474
GluI	GCNGC	3 cut(s)	432, 471, 474
GsuI	CTGGAG	1 cut(s)	338
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	3 cut(s)	28, 108, 406
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	4 cut(s)	247, 272, 322, 445
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	3 cut(s)	13, 160, 297
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	2 cut(s)	46, 258
Hpy188III	TCNNGA	2 cut(s)	317, 403
Hpy8I	GTNNAC	1 cut(s)	356
HpyCH4III	ACNGT	4 cut(s)	85, 127, 133, 455
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	69, 78, 108, 150
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 147, 467
HpyF3I	CTNAG	2 cut(s)	45, 363
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	28, 108, 406
Kzo9I	GATC	2 cut(s)	222, 414
LmnI	GCTCC	1 cut(s)	201
Lsp1109I	GCAGC	3 cut(s)	443, 457, 460
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	4 cut(s)	19, 127, 152, 303
MalI	GATC	2 cut(s)	224, 416
MboI	GATC	2 cut(s)	222, 414
MboII	GAAGA	3 cut(s)	23, 242, 379
MflI	RGATCY	1 cut(s)	414
MlyI	GAGTC	2 cut(s)	241, 331
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	167, 219, 273, 403
MseI	TTAA	2 cut(s)	426, 496
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	75, 147, 467
NciI	CCSGG	1 cut(s)	8
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	222, 414
NlaIII	CATG	3 cut(s)	28, 108, 406
NmuCI	GTSAC	3 cut(s)	19, 127, 303
PagI	TCATGA	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	272, 445
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	3 cut(s)	433, 472, 475
PleI	GAGTC	2 cut(s)	241, 330
PpsI	GAGTC	2 cut(s)	241, 330
PsuI	RGATCY	1 cut(s)	414
PsyI	GACNNNGTC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	426, 496
SatI	GCNGC	3 cut(s)	432, 471, 474
Sau3AI	GATC	2 cut(s)	222, 414
SchI	GAGTC	2 cut(s)	241, 331
ScrFI	CCNGG	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	58
SsiI	CCGC	4 cut(s)	92, 112, 141, 421
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	4 cut(s)	85, 127, 133, 455
TaiI	ACGT	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	272, 445
Tru1I	TTAA	2 cut(s)	426, 496
Tru9I	TTAA	2 cut(s)	426, 496
TscAI	CASTG	4 cut(s)	132, 138, 221, 274
TseFI	GTSAC	3 cut(s)	19, 127, 303
TseI	GCWGC	3 cut(s)	431, 470, 473
Tsp45I	GTSAC	3 cut(s)	19, 127, 303
TspDTI	ATGAA	5 cut(s)	17, 242, 279, 391, 419
TspRI	CASTG	4 cut(s)	132, 138, 221, 274
Tth111I	GACNNNGTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.