Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012468

Physical Location & Seq

Genomic Coordinates Reverse (-)

48141513 .. 48142618

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0305200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCATCGTCTCTCTCACTTTCTGGGTTGTGCTCTTGCCAGTCTGATCTTCGAAACCTGTCATCCCCCTCCGTACAATTCTTGGTCCGCCCTCGAACCTTCAAGAAACTCAAAGTGCTGGCAGCTGGGAATACTTCAGGAAACTACTTTAGGGTTACAACTTATGGAGAGTTTCGCCGTGCTGGTGTTAGTTTTGTAATGGATGGAGTTCCTCCTCGGAGTCAACTATCTGAAGCTGATTTGCAAGGGGACCTCAACAGAATAAGGAGGCCAGGATTGACTATTGGGACACCAATTCATGTGTTTATACCCAATCCTGATCAGACAGGTCGATGTGGTTATGACGAAATCTCCGTAGCTTATAGGCCTTCACATGCAGATGTAACACGCGACATGAAGTATGGTATCAGATCAATACTTAAGGGTGGCGGTATATTTTCAGCTAGGGAAACAATAGGAAGAGTTGCTGCAGGGGCAGCTGCGAAGAAAATCCTCAAGGACTTGGCCGGAATCGAGGTTCTTGGTTATGTTTCACAAGTTCACAAGGTTGTCCTCCCGGAGGACTTGGTTGATCATGACACTCTGACACTTGATCAGATAGAGAGCAATAGAGTTAGGTGTCCAGATCATGAATACGCAGAGAAGATGATAGCTGCCATCCATGCTGTTAGGGTTAGAGGGGAGGATCAACCTATTGGTGGTGTTGTCAGGTGCATAGTTAGGAATTGCCCGCGGGGTCTTCTTGGTTCTCCTTTCTTCGACAAACTTGGAGCTGAATTTGCTAAAGCTTGTCTGTCATTACCTGCAACAAAGGGATTTGAATTCGGAAGGGGCCTTGCAGCAGGTACCTTAAACATGAAGATAGCTTTCGAGCCAACAGCTACAGATGCAAGGAACCAGAATGCAGTGACTACAGGTAAGGAGAGTGAACTAATGGATGCTTGTGTTGTCCCCCGAGCGGTTCCAATGGTGGAGGCTCAAGTGGCGCTGGTGCTTATGGATGAATTAATGACTCAATATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010254 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048479 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

341

Amino Acids

36.93

Weight (kDa)

8.74

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chorismate_synt	PF01264	92 - 281	2e-50	Chorismate synthase
Chorismate_synt	PF01264	284 - 337	5.7e-06	Chorismate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69180
fragaria_vesca	FvH4_4g29650
malus_domestica	MD13G1059600.v1.1 MD16G1058900.v1.1
prunus_persica	Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437891
rosa_laevigata	RLG00000006402
rosa_roxburghii	Rroxscaffold_5G00379070
rosa_rugosa	Rorug04G0305200 Rorug04G0305300 Rorug04G0305400
rosa_samantha	Rh4AG357000 Rh4BG368000 Rh4CG382000 Rh4DG362600
rosa_wichuraiana	Rw0G011560 Rw0G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	811, 833
Acc65I	GGTACC	1 cut(s)	845
AccB1I	GGYRCC	1 cut(s)	845
AccBSI	CCGCTC	1 cut(s)	959
AccII	CGCG	2 cut(s)	390, 733
AciI	CCGC	5 cut(s)	88, 429, 731, 733, 959
AclWI	GGATC	1 cut(s)	693
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	2 cut(s)	776, 821
AcuI	CTGAAG	2 cut(s)	120, 252
AfaI	GTAC	2 cut(s)	75, 847
AfiI	CCNNNNNNNGG	3 cut(s)	559, 698, 958
AflII	CTTAAG	1 cut(s)	419
AgsI	TTSAA	2 cut(s)	103, 821
AjnI	CCWGG	1 cut(s)	271
AloI	GAACNNNNNNTCC	2 cut(s)	501, 533
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	693
Ama87I	CYCGRG	1 cut(s)	954
AoxI	GGCC	4 cut(s)	269, 365, 504, 832
ApeKI	GCWGC	6 cut(s)	122, 467, 476, 479, 653, 839
ApoI	RAATTY	2 cut(s)	776, 821
AseI	ATTAAT	1 cut(s)	1007
Asp718I	GGTACC	1 cut(s)	845
AspLEI	GCGC	1 cut(s)	988
AspS9I	GGNCC	3 cut(s)	85, 250, 832
AsuC2I	CCSGG	1 cut(s)	557
AsuII	TTCGAA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	954
AvaII	GGWCC	2 cut(s)	85, 250
BanI	GGYRCC	1 cut(s)	845
BbsI	GAAGAC	1 cut(s)	731
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	6 cut(s)	134, 454, 466, 488, 640, 851
BccI	CCATC	2 cut(s)	197, 665
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	273
BclI	TGATCA	3 cut(s)	319, 571, 592
BcnI	CCSGG	1 cut(s)	557
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	3 cut(s)	468, 882, 912
BfoI	RGCGCY	1 cut(s)	989
BfrI	CTTAAG	1 cut(s)	419
BfuAI	ACCTGC	2 cut(s)	811, 833
BisI	GCNGC	6 cut(s)	123, 468, 477, 480, 654, 840
BlsI	GCNGC	6 cut(s)	124, 469, 478, 481, 655, 841
Bme1390I	CCNGG	2 cut(s)	273, 557
Bme18I	GGWCC	2 cut(s)	85, 250
BmeT110I	CYCGRG	1 cut(s)	954
BmgT120I	GGNCC	3 cut(s)	85, 250, 832
BmiI	GGNNCC	5 cut(s)	251, 833, 847, 896, 963
BmrFI	CCNGG	2 cut(s)	273, 557
BmsI	GCATC	3 cut(s)	14, 877, 928
BpiI	GAAGAC	1 cut(s)	731
Bpu14I	TTCGAA	1 cut(s)	52
BpuEI	CTTGAG	2 cut(s)	479, 963
BpuMI	CCSGG	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	215, 731
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	3 cut(s)	559, 698, 958
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	215, 731
BseGI	GGATG	5 cut(s)	62, 208, 657, 943, 1006
BseLI	CCNNNNNNNGG	3 cut(s)	559, 698, 958
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	6 cut(s)	134, 454, 466, 488, 640, 851
BseYI	CCCAGC	1 cut(s)	125
Bsh1236I	CGCG	2 cut(s)	390, 733
BshFI	GGCC	4 cut(s)	271, 367, 506, 834
BshNI	GGYRCC	1 cut(s)	845
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	954
BsiSI	CCGG	2 cut(s)	507, 557
BslFI	GGGAC	3 cut(s)	263, 301, 935
BslI	CCNNNNNNNGG	3 cut(s)	559, 698, 958
BsmAI	GTCTC	1 cut(s)	15
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	3 cut(s)	263, 301, 935
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	4 cut(s)	271, 367, 506, 834
BsoBI	CYCGRG	1 cut(s)	954
Bsp119I	TTCGAA	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	7 cut(s)	46, 319, 410, 571, 592, 625, 685
BspACI	CCGC	5 cut(s)	88, 429, 731, 733, 959
BspANI	GGCC	4 cut(s)	271, 367, 506, 834
BspFNI	CGCG	2 cut(s)	390, 733
BspHI	TCATGA	2 cut(s)	574, 628
BspLI	GGNNCC	5 cut(s)	251, 833, 847, 896, 963
BspMAI	CTGCAG	1 cut(s)	472
BspMI	ACCTGC	2 cut(s)	811, 833
BspPI	GGATC	1 cut(s)	693
BspT104I	TTCGAA	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	845
BspTI	CTTAAG	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	959
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	215, 731
BssMI	GATC	7 cut(s)	46, 319, 410, 571, 592, 625, 685
Bst2UI	CCWGG	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	454
BstAFI	CTTAAG	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	120, 731
BstDSI	CCRYGG	1 cut(s)	731
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	5 cut(s)	62, 208, 657, 943, 1006
BstFNI	CGCG	2 cut(s)	390, 733
BstH2I	RGCGCY	1 cut(s)	989
BstHHI	GCGC	1 cut(s)	988
BstKTI	GATC	7 cut(s)	49, 322, 413, 574, 595, 628, 688
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	7 cut(s)	46, 319, 410, 571, 592, 625, 685
BstMWI	GCNNNNNNNGC	6 cut(s)	473, 476, 662, 779, 887, 983
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	271, 555
BstSFI	CTRYAG	3 cut(s)	468, 882, 912
BstUI	CGCG	2 cut(s)	390, 733
BstV1I	GCAGC	6 cut(s)	134, 454, 466, 488, 640, 851
BstV2I	GAAGAC	1 cut(s)	731
BsuRI	GGCC	4 cut(s)	271, 367, 506, 834
BtgI	CCRYGG	1 cut(s)	731
BtsCI	GGATG	5 cut(s)	62, 208, 657, 943, 1006
BtsI	GCAGTG	1 cut(s)	912
BtsIMutI	CAGTG	1 cut(s)	912
BveI	ACCTGC	2 cut(s)	811, 833
Cac8I	GCNNGC	2 cut(s)	120, 731
CciI	TCATGA	2 cut(s)	574, 628
CfoI	GCGC	1 cut(s)	988
Cfr13I	GGNCC	3 cut(s)	85, 250, 832
Cfr42I	CCGCGG	1 cut(s)	734
Csp6I	GTAC	2 cut(s)	74, 846
CviAII	CATG	7 cut(s)	299, 374, 394, 575, 629, 662, 856
CviQI	GTAC	2 cut(s)	74, 846
DpnI	GATC	7 cut(s)	48, 321, 412, 573, 594, 627, 687
DpnII	GATC	7 cut(s)	46, 319, 410, 571, 592, 625, 685
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
EciI	GGCGGA	1 cut(s)	77
Eco147I	AGGCCT	1 cut(s)	367
Eco47I	GGWCC	2 cut(s)	85, 250
Eco57I	CTGAAG	2 cut(s)	120, 252
Eco88I	CYCGRG	1 cut(s)	954
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoO109I	RGGNCCY	2 cut(s)	250, 832
EcoRI	GAATTC	1 cut(s)	821
EcoRII	CCWGG	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	7 cut(s)	302, 377, 397, 578, 632, 665, 859
FaqI	GGGAC	3 cut(s)	263, 301, 935
FatI	CATG	7 cut(s)	298, 373, 393, 574, 628, 661, 855
FauI	CCCGC	2 cut(s)	726, 738
FbaI	TGATCA	3 cut(s)	319, 571, 592
Fnu4HI	GCNGC	6 cut(s)	123, 468, 477, 480, 654, 840
FokI	GGATG	5 cut(s)	49, 215, 644, 950, 1013
Fsp4HI	GCNGC	6 cut(s)	123, 468, 477, 480, 654, 840
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	1 cut(s)	987
GluI	GCNGC	6 cut(s)	123, 468, 477, 480, 654, 840
GsaI	CCCAGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	989
HaeIII	GGCC	4 cut(s)	271, 367, 506, 834
HapII	CCGG	2 cut(s)	507, 557
HhaI	GCGC	1 cut(s)	988
Hin1II	CATG	7 cut(s)	302, 377, 397, 578, 632, 665, 859
Hin6I	GCGC	1 cut(s)	986
HinP1I	GCGC	1 cut(s)	986
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HindIII	AAGCTT	1 cut(s)	786
HinfI	GANTC	3 cut(s)	220, 510, 1012
HpaII	CCGG	2 cut(s)	507, 557
Hpy166II	GTNNAC	3 cut(s)	224, 541, 929
Hpy188I	TCNGA	8 cut(s)	46, 219, 232, 324, 410, 585, 597, 827
Hpy188III	TCNNGA	6 cut(s)	103, 138, 317, 575, 623, 629
Hpy8I	GTNNAC	3 cut(s)	224, 541, 929
HpyAV	CCTTC	3 cut(s)	109, 378, 822
HpyCH4V	TGCA	8 cut(s)	244, 377, 470, 714, 806, 839, 890, 905
HpyF10VI	GCNNNNNNNGC	6 cut(s)	473, 476, 662, 779, 887, 983
Hsp92II	CATG	7 cut(s)	302, 377, 397, 578, 632, 665, 859
HspAI	GCGC	1 cut(s)	986
KpnI	GGTACC	1 cut(s)	849
Ksp22I	TGATCA	3 cut(s)	319, 571, 592
KspI	CCGCGG	1 cut(s)	734
Kzo9I	GATC	7 cut(s)	46, 319, 410, 571, 592, 625, 685
LmnI	GCTCC	1 cut(s)	770
Lsp1109I	GCAGC	6 cut(s)	134, 454, 466, 488, 640, 851
LweI	GCATC	3 cut(s)	14, 877, 928
MaeI	CTAG	1 cut(s)	444
MaeIII	GTNAC	3 cut(s)	154, 382, 907
MalI	GATC	7 cut(s)	48, 321, 412, 573, 594, 627, 687
MbiI	CCGCTC	1 cut(s)	959
MboI	GATC	7 cut(s)	46, 319, 410, 571, 592, 625, 685
MboII	GAAGA	7 cut(s)	41, 471, 496, 655, 731, 748, 871
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	6 cut(s)	77, 294, 724, 776, 821, 1004
MlyI	GAGTC	2 cut(s)	229, 1006
MseI	TTAA	3 cut(s)	420, 851, 1007
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	3 cut(s)	125, 479, 733
MspCI	CTTAAG	1 cut(s)	419
MspI	CCGG	2 cut(s)	507, 557
MspR9I	CCNGG	2 cut(s)	273, 557
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	2 cut(s)	390, 733
MwoI	GCNNNNNNNGC	6 cut(s)	473, 476, 662, 779, 887, 983
NciI	CCSGG	1 cut(s)	557
NdeII	GATC	7 cut(s)	46, 319, 410, 571, 592, 625, 685
NlaIII	CATG	7 cut(s)	302, 377, 397, 578, 632, 665, 859
NlaIV	GGNNCC	5 cut(s)	251, 833, 847, 896, 963
NmuCI	GTSAC	1 cut(s)	907
NspI	RCATGY	1 cut(s)	377
NspV	TTCGAA	1 cut(s)	52
PagI	TCATGA	2 cut(s)	574, 628
PceI	AGGCCT	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PctI	GAATGC	1 cut(s)	907
PfeI	GAWTC	1 cut(s)	510
PfoI	TCCNGGA	1 cut(s)	555
PkrI	GCNGC	6 cut(s)	124, 469, 478, 481, 655, 841
PleI	GAGTC	2 cut(s)	228, 1006
PpsI	GAGTC	2 cut(s)	228, 1006
PpuMI	RGGWCCY	1 cut(s)	250
PshBI	ATTAAT	1 cut(s)	1007
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	5 cut(s)	251, 833, 847, 896, 963
PspPI	GGNCC	3 cut(s)	85, 250, 832
PspPPI	RGGWCCY	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	472
PvuII	CAGCTG	2 cut(s)	125, 479
RsaI	GTAC	2 cut(s)	75, 847
RsaNI	GTAC	2 cut(s)	74, 846
RseI	CAYNNNNRTG	1 cut(s)	378
SacII	CCGCGG	1 cut(s)	734
SaqAI	TTAA	3 cut(s)	420, 851, 1007
SatI	GCNGC	6 cut(s)	123, 468, 477, 480, 654, 840
Sau3AI	GATC	7 cut(s)	46, 319, 410, 571, 592, 625, 685
Sau96I	GGNCC	3 cut(s)	85, 250, 832
SchI	GAGTC	2 cut(s)	229, 1006
ScrFI	CCNGG	2 cut(s)	273, 557
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	3 cut(s)	14, 877, 928
SfcI	CTRYAG	3 cut(s)	468, 882, 912
Sfr303I	CCGCGG	1 cut(s)	734
SfuI	TTCGAA	1 cut(s)	52
SgrBI	CCGCGG	1 cut(s)	734
SinI	GGWCC	2 cut(s)	85, 250
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	3 cut(s)	419, 494, 978
SmoI	CTYRAG	3 cut(s)	419, 494, 978
Sse9I	AATT	6 cut(s)	77, 294, 724, 776, 821, 1004
SseBI	AGGCCT	1 cut(s)	367
SsiI	CCGC	5 cut(s)	88, 429, 731, 733, 959
SspMI	CTAG	1 cut(s)	444
StuI	AGGCCT	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	271, 555
TaqI	TCGA	6 cut(s)	52, 94, 331, 513, 759, 870
TasI	AATT	6 cut(s)	77, 294, 724, 776, 821, 1004
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	3 cut(s)	420, 851, 1007
Tru9I	TTAA	3 cut(s)	420, 851, 1007
TscAI	CASTG	1 cut(s)	912
TseFI	GTSAC	1 cut(s)	907
TseI	GCWGC	6 cut(s)	122, 467, 476, 479, 653, 839
Tsp45I	GTSAC	1 cut(s)	907
TspDTI	ATGAA	5 cut(s)	287, 410, 645, 872, 1017
TspGWI	ACGGA	2 cut(s)	61, 343
TspRI	CASTG	1 cut(s)	912
Vha464I	CTTAAG	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	85, 250
VspI	ATTAAT	1 cut(s)	1007
XagI	CCTNNNNNAGG	1 cut(s)	557
XapI	RAATTY	2 cut(s)	776, 821
XceI	RCATGY	1 cut(s)	377
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.