Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012468

Physical Location & Seq

Genomic Coordinates Reverse (-)

4214523 .. 4216876

Gene Structure 2354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1058900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAACATGGAAGAGAAAGTTACCATGGACCTCATTAATCAGCCATCTGAGCACCTTTGCTATGTTCGGTGCAACTTCTGCAACACTGTTCTTGCGGTTGGGATTCCATGCAAACGGTTGATGGACACAGTAACAGTGAAATGTGGTCATTGCAGTAACCTCTCCTTTCTCAGCACCAGACCTCCACTCCAAGGTCAATGCCTTCCTGATCACCCCACCTCCTTGACTCTTCAGCAGGCGGGCTGTTGCAATGACTTCAAGAAGGACCAATCCTCCACATCATCGTCACCGGTATCAAGCGACCCACCATCCCCCAAAGCACCTTTTGTTGTGAAACCACCGGAGAAGAAACACAGACTTCCATCTGCCTACAATCGATTCATGAAAGATGAGATCCAGCGAATCAAAGCAGCAAACCCAGAGATTCCACATCGTGAAGCTTTTAGTGCTGCAGCAAAAAATTGGGCTAGGTACATTCCCTGTCAATCGTCAGCTGCAGGATCAGGTTCTGGGAGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009888 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010022 GO:0010073 GO:0010093 GO:0010094 GO:0010254 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048449 GO:0048462 GO:0048467 GO:0048479 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

174

Amino Acids

19.0

Weight (kDa)

8.83

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	15 - 64	1.7e-24	YABBY, N-terminal
YABBY	PF04690	101 - 162	4.7e-33	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69180
fragaria_vesca	FvH4_4g29650
malus_domestica	MD13G1059600.v1.1 MD16G1058900.v1.1
prunus_persica	Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1 Prupe.1G290100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0437891
rosa_laevigata	RLG00000006402
rosa_roxburghii	Rroxscaffold_5G00379070
rosa_rugosa	Rorug04G0305200 Rorug04G0305300 Rorug04G0305400
rosa_samantha	Rh4AG357000 Rh4BG368000 Rh4CG382000 Rh4DG362600
rosa_wichuraiana	Rw0G011560 Rw0G016110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	95, 239
AclWI	GGATC	2 cut(s)	388, 508
AcuI	CTGAAG	1 cut(s)	215
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgeI	ACCGGT	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	3 cut(s)	440, 494, 516
AluI	AGCT	3 cut(s)	440, 494, 516
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	388, 508
AlwNI	CAGNNNCTG	1 cut(s)	509
ApeKI	GCWGC	4 cut(s)	410, 449, 452, 494
AseI	ATTAAT	1 cut(s)	36
AsiGI	ACCGGT	1 cut(s)	289
AspS9I	GGNCC	2 cut(s)	28, 265
AsuHPI	GGTGA	2 cut(s)	203, 279
AvaII	GGWCC	2 cut(s)	28, 265
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	4 cut(s)	422, 436, 464, 481
BccI	CCATC	4 cut(s)	52, 115, 316, 370
BclI	TGATCA	1 cut(s)	208
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	2 cut(s)	450, 495
BisI	GCNGC	4 cut(s)	411, 450, 453, 495
BlsI	GCNGC	4 cut(s)	412, 451, 454, 496
Bme18I	GGWCC	2 cut(s)	28, 265
BmgT120I	GGNCC	2 cut(s)	28, 265
Bsa29I	ATCGAT	1 cut(s)	376
BsaJI	CCNNGG	2 cut(s)	24, 190
BsaWI	WCCGGW	2 cut(s)	289, 340
BsaXI	ACNNNNNCTCC	8 cut(s)	166, 171, 196, 201, 203, 233, 257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse118I	RCCGGY	1 cut(s)	289
Bse3DI	GCAATG	2 cut(s)	148, 256
BseCI	ATCGAT	1 cut(s)	376
BseDI	CCNNGG	2 cut(s)	24, 190
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMI	GCAATG	2 cut(s)	148, 256
BseMII	CTCAG	2 cut(s)	39, 184
BseXI	GCAGC	4 cut(s)	422, 436, 464, 481
BshTI	ACCGGT	1 cut(s)	289
BshVI	ATCGAT	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	290, 341
BslI	CCNNNNNNNGG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	208, 393, 500
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	2 cut(s)	95, 239
BspCNI	CTCAG	2 cut(s)	40, 183
BspDI	ATCGAT	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	381
BspMAI	CTGCAG	2 cut(s)	454, 499
BspPI	GGATC	2 cut(s)	388, 508
BsrDI	GCAATG	2 cut(s)	148, 256
BsrFI	RCCGGY	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	24, 190
BssMI	GATC	3 cut(s)	208, 393, 500
BssT1I	CCWWGG	2 cut(s)	24, 190
Bst4CI	ACNGT	4 cut(s)	88, 117, 130, 136
Bst6I	CTCTTC	2 cut(s)	6, 234
BstAPI	GCANNNNNTGC	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	237, 241
BstDEI	CTNAG	2 cut(s)	48, 170
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	308
BstKTI	GATC	3 cut(s)	211, 396, 503
BstMBI	GATC	3 cut(s)	208, 393, 500
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 78, 446
BstSFI	CTRYAG	2 cut(s)	450, 495
BstV1I	GCAGC	4 cut(s)	422, 436, 464, 481
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
Bsu15I	ATCGAT	1 cut(s)	376
BsuTUI	ATCGAT	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	2 cut(s)	84, 141
Cac8I	GCNNGC	2 cut(s)	237, 241
CaiI	CAGNNNCTG	1 cut(s)	509
CciI	TCATGA	1 cut(s)	381
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	2 cut(s)	28, 265
ClaI	ATCGAT	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	472
CspAI	ACCGGT	1 cut(s)	289
CviAII	CATG	4 cut(s)	7, 25, 108, 382
CviJI	RGCY	6 cut(s)	43, 243, 440, 467, 494, 516
CviKI_1	RGCY	6 cut(s)	43, 243, 440, 467, 494, 516
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	2 cut(s)	48, 170
DpnI	GATC	3 cut(s)	210, 395, 502
DpnII	GATC	3 cut(s)	208, 393, 500
DraIII	CACNNNGTG	1 cut(s)	434
Eam1104I	CTCTTC	2 cut(s)	6, 234
EarI	CTCTTC	2 cut(s)	6, 234
Eco130I	CCWWGG	2 cut(s)	24, 190
Eco47I	GGWCC	2 cut(s)	28, 265
Eco57I	CTGAAG	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	24, 190
ErhI	CCWWGG	2 cut(s)	24, 190
FaeI	CATG	4 cut(s)	10, 28, 111, 385
FaiI	YATR	5 cut(s)	8, 26, 63, 109, 383
FatI	CATG	4 cut(s)	6, 24, 107, 381
FauI	CCCGC	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	4 cut(s)	411, 450, 453, 495
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	4 cut(s)	411, 450, 453, 495
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	4 cut(s)	411, 450, 453, 495
HapII	CCGG	2 cut(s)	290, 341
Hin1II	CATG	4 cut(s)	10, 28, 111, 385
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	5 cut(s)	103, 226, 378, 402, 424
HpaII	CCGG	2 cut(s)	290, 341
HphI	GGTGA	2 cut(s)	203, 279
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	4 cut(s)	206, 259, 382, 434
HpyAV	CCTTC	2 cut(s)	212, 256
HpyCH4III	ACNGT	4 cut(s)	88, 117, 130, 136
HpyCH4V	TGCA	7 cut(s)	72, 81, 111, 153, 249, 452, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 78, 446
HpyF3I	CTNAG	2 cut(s)	48, 170
Hsp92II	CATG	4 cut(s)	10, 28, 111, 385
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	208, 393, 500
LmnI	GCTCC	1 cut(s)	513
Lsp1109I	GCAGC	4 cut(s)	422, 436, 464, 481
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	4 cut(s)	19, 130, 155, 285
MalI	GATC	3 cut(s)	210, 395, 502
MboI	GATC	3 cut(s)	208, 393, 500
MboII	GAAGA	3 cut(s)	23, 221, 358
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	1 cut(s)	460
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	5 cut(s)	41, 170, 192, 229, 283
MseI	TTAA	2 cut(s)	36, 520
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	2 cut(s)	290, 341
MwoI	GCNNNNNNNGC	3 cut(s)	49, 78, 446
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	3 cut(s)	208, 393, 500
NlaIII	CATG	4 cut(s)	10, 28, 111, 385
NmuCI	GTSAC	1 cut(s)	285
PagI	TCATGA	1 cut(s)	381
PfeI	GAWTC	4 cut(s)	103, 378, 402, 424
PinAI	ACCGGT	1 cut(s)	289
PkrI	GCNGC	4 cut(s)	412, 451, 454, 496
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PshBI	ATTAAT	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	28, 265
PstI	CTGCAG	2 cut(s)	454, 499
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	393
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SaqAI	TTAA	2 cut(s)	36, 520
SatI	GCNGC	4 cut(s)	411, 450, 453, 495
Sau3AI	GATC	3 cut(s)	208, 393, 500
Sau96I	GGNCC	2 cut(s)	28, 265
SchI	GAGTC	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	54
SfcI	CTRYAG	2 cut(s)	450, 495
SinI	GGWCC	2 cut(s)	28, 265
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	2 cut(s)	95, 239
SspMI	CTAG	1 cut(s)	468
StyI	CCWWGG	2 cut(s)	24, 190
TaaI	ACNGT	4 cut(s)	88, 117, 130, 136
TaqI	TCGA	1 cut(s)	376
TasI	AATT	1 cut(s)	460
TfiI	GAWTC	4 cut(s)	103, 378, 402, 424
Tru1I	TTAA	2 cut(s)	36, 520
Tru9I	TTAA	2 cut(s)	36, 520
TscAI	CASTG	2 cut(s)	91, 141
TseFI	GTSAC	1 cut(s)	285
TseI	GCWGC	4 cut(s)	410, 449, 452, 494
Tsp45I	GTSAC	1 cut(s)	285
TspDTI	ATGAA	3 cut(s)	17, 370, 398
TspRI	CASTG	2 cut(s)	91, 141
VpaK11BI	GGWCC	2 cut(s)	28, 265
VspI	ATTAAT	1 cut(s)	36
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.