Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011776

Physical Location & Seq

Genomic Coordinates Forward (+)

26079956 .. 26081727

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGGCTAAGTTACTCAAACCCGCGTTTTACAATTCCCCAAACCTCAATCTTACGAATTCTTCAAGACTCATCTCGCGATTATCAATCTGGAACGATAAATCAAAAGTTGGACTATCTTCTGGGTCTCTCTTCCTCCGTCTCTCCGCAGCTTCTCCGATCCGATACTCTAGGGGGCTACTAAGGGTAGATGAGAGTGAGTATTTGAAACTTGAAAGCATTAGACACTCTTTGATTCGTCAAGAGGACAGTATTATCTTTAATCTTCTTGAACGAGCTCAGTATCGCTACAACGCTGATACTTATGACGAGGATGCCTTTACTATGGAAGGGTTTCAAGGATCTTTAGTTGAGTTTATGGTCAGAGAAACTGAAAAGCTTCACGCAAAGGTGGACAGGTACAAGAGTCCTGATGAGCATCCCTTTTTCCCACAATGCTTGCCTGAACCTATCCTTCCTCCTATTCAATACCCACAGGTTTTGCATCGTTGCGCCGAATCGATAAACATCAACAAGAAGGTGTGGAATATGTATTTCAAACACCTTCTCCCCAGACTGGTCAAGCCAGGGGATGACGGTAATTGTGGTTCAGCTGCTCTCTGTGACACAATGTGTTTGCAGATACTTTCAAAGAGAATTCACTTTGGTAAATTTGTTGCTGAAGCCAAGTTTCGTGAAAATCCTGCTGCCTATGAAACAGCTATCAAAGAACAAGACCGGACACAGCTGATGCAACTTCTAACGTACGAAACGGTTGAAGAAGTAGTCAAGAAGAGAGTTGAGATCAAAGCCAGAATTTTTGGTCAAGACATAACGATTAACGACCCAGAAACTGAAGCTGATCCTTCCTACAAAATACAACCTAGCTTAGTTGCAAAACTCTATGGAGAAAGGATCATGCCCCTCACAAAGGAAGTCCAAATTGAGTACTTGCTTAGAAGACTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004106 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009987 GO:0016053 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

36.57

Weight (kDa)

7.62

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	200 - 307	7.1e-08	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69370
fragaria_vesca	FvH4_4g30560
malus_domestica	MD13G1066600.v1.1 MD16G1065700.v1.1
prunus_persica	Prupe.1G281400_v2.0.a1
pyrus_communis	pycom16g05730
rosa_chinensis	RchiOBHm_Chr4g0438951
rosa_laevigata	RLG00000006316
rosa_multiflora	Rmu_sc0005887.1_g000005 Rmu_sc0023005.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379960
rosa_rugosa	Rorug04G0314500 Rorug04G0314500
rosa_samantha	Rh4AG365200 Rh4BG376400 Rh4CG390500 Rh4DG371100
rosa_wichuraiana	Rw0G007350 Rw0G016900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	26, 79
AciI	CCGC	2 cut(s)	24, 147
AclWI	GGATC	4 cut(s)	154, 349, 836, 902
AcsI	RAATTY	4 cut(s)	58, 636, 650, 795
AcuI	CTGAAG	2 cut(s)	681, 855
AdeI	CACNNNGTG	1 cut(s)	612
AfaI	GTAC	3 cut(s)	401, 746, 929
AfiI	CCNNNNNNNGG	2 cut(s)	556, 910
AgsI	TTSAA	9 cut(s)	66, 208, 215, 272, 338, 467, 538, 630, 758
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	8 cut(s)	152, 278, 379, 593, 701, 727, 839, 867
AluI	AGCT	8 cut(s)	152, 278, 379, 593, 701, 727, 839, 867
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	2 cut(s)	132, 146
AlwI	GGATC	4 cut(s)	154, 349, 836, 902
AlwNI	CAGNNNCTG	1 cut(s)	833
ApeKI	GCWGC	3 cut(s)	149, 593, 686
ApoI	RAATTY	4 cut(s)	58, 636, 650, 795
Asp700I	GAANNNNTTC	2 cut(s)	333, 378
AspLEI	GCGC	1 cut(s)	494
BaeI	ACNNNNGTAYC	2 cut(s)	391, 424
BanII	GRGCYC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	946
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	3 cut(s)	161, 580, 673
BciT130I	CCWGG	1 cut(s)	567
BcoDI	GTCTC	2 cut(s)	132, 146
BfaI	CTAG	2 cut(s)	171, 864
BisI	GCNGC	3 cut(s)	150, 594, 687
BlsI	GCNGC	3 cut(s)	151, 595, 688
BmcAI	AGTACT	1 cut(s)	929
Bme1390I	CCNGG	1 cut(s)	567
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	4 cut(s)	304, 427, 493, 720
BpiI	GAAGAC	1 cut(s)	946
Bsa29I	ATCGAT	1 cut(s)	500
BsaBI	GATNNNNATC	2 cut(s)	417, 506
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	566
BsaWI	WCCGGW	1 cut(s)	717
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 531, 561
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 910
Bse1I	ACTGG	2 cut(s)	561, 948
Bse8I	GATNNNNATC	2 cut(s)	417, 506
BseBI	CCWGG	1 cut(s)	567
BseCI	ATCGAT	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	3 cut(s)	319, 418, 577
BseJI	GATNNNNATC	2 cut(s)	417, 506
BseLI	CCNNNNNNNGG	2 cut(s)	556, 910
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	561, 948
BseXI	GCAGC	3 cut(s)	161, 580, 673
Bsh1236I	CGCG	2 cut(s)	26, 79
BshVI	ATCGAT	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	718
BsiWI	CGTACG	1 cut(s)	744
BslI	CCNNNNNNNGG	2 cut(s)	556, 910
BsmAI	GTCTC	2 cut(s)	132, 146
BsmBI	CGTCTC	1 cut(s)	146
Bso31I	GGTCTC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	5 cut(s)	159, 341, 783, 841, 894
Bsp68I	TCGCGA	1 cut(s)	79
BspACI	CCGC	2 cut(s)	24, 147
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	500
BspFNI	CGCG	2 cut(s)	26, 79
BspPI	GGATC	4 cut(s)	154, 349, 836, 902
BspTNI	GGTCTC	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	561, 948
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	5 cut(s)	159, 341, 783, 841, 894
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	3 cut(s)	251, 578, 754
Bst6I	CTCTTC	2 cut(s)	137, 767
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	5 cut(s)	9, 182, 279, 868, 935
BstENI	CCTNNNNNAGG	1 cut(s)	908
BstF5I	GGATG	3 cut(s)	319, 418, 577
BstFNI	CGCG	2 cut(s)	26, 79
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	5 cut(s)	162, 344, 786, 844, 897
BstMAI	GTCTC	2 cut(s)	132, 146
BstMBI	GATC	5 cut(s)	159, 341, 783, 841, 894
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	565
BstUI	CGCG	2 cut(s)	26, 79
BstV1I	GCAGC	3 cut(s)	161, 580, 673
BstV2I	GAAGAC	1 cut(s)	946
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
Bsu15I	ATCGAT	1 cut(s)	500
BsuTUI	ATCGAT	1 cut(s)	500
BtsCI	GGATG	3 cut(s)	319, 418, 577
BtuMI	TCGCGA	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	440
CaiI	CAGNNNCTG	1 cut(s)	833
CfoI	GCGC	1 cut(s)	494
ClaI	ATCGAT	1 cut(s)	500
Csp6I	GTAC	3 cut(s)	400, 745, 928
CspCI	CAANNNNNGTGG	4 cut(s)	420, 455, 462, 497
CviAII	CATG	1 cut(s)	898
CviQI	GTAC	3 cut(s)	400, 745, 928
DdeI	CTNAG	5 cut(s)	9, 182, 279, 868, 935
DpnI	GATC	5 cut(s)	161, 343, 785, 843, 896
DpnII	GATC	5 cut(s)	159, 341, 783, 841, 894
DraIII	CACNNNGTG	1 cut(s)	612
Eam1104I	CTCTTC	2 cut(s)	137, 767
EarI	CTCTTC	2 cut(s)	137, 767
Ecl136II	GAGCTC	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	278
Eco57I	CTGAAG	2 cut(s)	681, 855
EcoICRI	GAGCTC	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	908
EcoRI	GAATTC	2 cut(s)	58, 636
EcoRII	CCWGG	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	280
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	1 cut(s)	901
FaiI	YATR	8 cut(s)	306, 326, 359, 530, 693, 812, 885, 899
FatI	CATG	1 cut(s)	897
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	150, 594, 687
FokI	GGATG	3 cut(s)	326, 405, 584
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	3 cut(s)	150, 594, 687
FspBI	CTAG	2 cut(s)	171, 864
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	3 cut(s)	150, 594, 687
HapII	CCGG	1 cut(s)	718
HhaI	GCGC	1 cut(s)	494
Hin1II	CATG	1 cut(s)	901
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	4 cut(s)	69, 235, 406, 497
HpaII	CCGG	1 cut(s)	718
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	3 cut(s)	159, 164, 365
Hpy188III	TCNNGA	9 cut(s)	66, 78, 91, 242, 269, 410, 674, 769, 806
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	5 cut(s)	323, 464, 511, 554, 855
HpyCH4III	ACNGT	3 cut(s)	251, 578, 754
HpyCH4IV	ACGT	1 cut(s)	743
HpyCH4V	TGCA	4 cut(s)	484, 619, 733, 875
HpyF3I	CTNAG	5 cut(s)	9, 182, 279, 868, 935
HpySE526I	ACGT	1 cut(s)	743
Hsp92II	CATG	1 cut(s)	901
HspAI	GCGC	1 cut(s)	492
Kzo9I	GATC	5 cut(s)	159, 341, 783, 841, 894
Lsp1109I	GCAGC	3 cut(s)	161, 580, 673
LweI	GCATC	4 cut(s)	304, 427, 493, 720
MaeI	CTAG	2 cut(s)	171, 864
MaeII	ACGT	1 cut(s)	743
MaeIII	GTNAC	2 cut(s)	12, 602
MalI	GATC	5 cut(s)	161, 343, 785, 843, 896
MboI	GATC	5 cut(s)	159, 341, 783, 841, 894
MboII	GAAGA	7 cut(s)	54, 111, 124, 257, 770, 784, 951
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	7 cut(s)	34, 58, 580, 636, 650, 795, 921
MlyI	GAGTC	2 cut(s)	63, 415
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	6 cut(s)	56, 146, 238, 304, 468, 914
MroXI	GAANNNNTTC	2 cut(s)	333, 378
MseI	TTAA	3 cut(s)	261, 819, 949
MspA1I	CMGCKG	2 cut(s)	593, 727
MspI	CCGG	1 cut(s)	718
MspR9I	CCNGG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	2 cut(s)	26, 79
NdeII	GATC	5 cut(s)	159, 341, 783, 841, 894
NlaIII	CATG	1 cut(s)	901
NmuCI	GTSAC	1 cut(s)	602
NruI	TCGCGA	1 cut(s)	79
PdmI	GAANNNNTTC	2 cut(s)	333, 378
PfeI	GAWTC	2 cut(s)	235, 497
Pfl23II	CGTACG	1 cut(s)	744
PkrI	GCNGC	3 cut(s)	151, 595, 688
PleI	GAGTC	2 cut(s)	63, 414
PpsI	GAGTC	2 cut(s)	63, 414
Psp124BI	GAGCTC	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspLI	CGTACG	1 cut(s)	744
PsrI	GAACNNNNNNTAC	2 cut(s)	571, 603
PstNI	CAGNNNCTG	1 cut(s)	833
PsuI	RGATCY	1 cut(s)	341
PvuII	CAGCTG	2 cut(s)	593, 727
RruI	TCGCGA	1 cut(s)	79
RsaI	GTAC	3 cut(s)	401, 746, 929
RsaNI	GTAC	3 cut(s)	400, 745, 928
SacI	GAGCTC	1 cut(s)	280
SaqAI	TTAA	3 cut(s)	261, 819, 949
SatI	GCNGC	3 cut(s)	150, 594, 687
Sau3AI	GATC	5 cut(s)	159, 341, 783, 841, 894
ScaI	AGTACT	1 cut(s)	929
SchI	GAGTC	2 cut(s)	63, 415
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	1 cut(s)	280
SfaNI	GCATC	4 cut(s)	304, 427, 493, 720
Sse9I	AATT	7 cut(s)	34, 58, 580, 636, 650, 795, 921
SsiI	CCGC	2 cut(s)	24, 147
SspMI	CTAG	2 cut(s)	171, 864
SstI	GAGCTC	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	565
TaaI	ACNGT	3 cut(s)	251, 578, 754
TaiI	ACGT	1 cut(s)	746
TaqI	TCGA	1 cut(s)	500
TasI	AATT	7 cut(s)	34, 58, 580, 636, 650, 795, 921
TatI	WGTACW	1 cut(s)	927
TfiI	GAWTC	2 cut(s)	235, 497
Tru1I	TTAA	3 cut(s)	261, 819, 949
Tru9I	TTAA	3 cut(s)	261, 819, 949
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	3 cut(s)	149, 593, 686
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	1 cut(s)	708
TspGWI	ACGGA	1 cut(s)	128
XagI	CCTNNNNNAGG	1 cut(s)	908
XapI	RAATTY	4 cut(s)	58, 636, 650, 795
XmnI	GAANNNNTTC	2 cut(s)	333, 378
XspI	CTAG	2 cut(s)	171, 864
ZrmI	AGTACT	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.