Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011776

Physical Location & Seq

Genomic Coordinates Forward (+)

4606117 .. 4609707

Gene Structure 3591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1065700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGATGCCAAGCTCTTGCAAGCTTCAATTCCCAATGCTTCAGCCCACAACGCCTCAAGGCCTTCACTACCCACTCCCCATTTGGTCAACCACACCATTTTTAGCACCCCCAACGGTGTTTTCCGATCAAATCCCGGAAGAAAACTGCACCGTCCTCTCCAAGTTTCTTCTTTTGCTGCAACTTCTCCCATCAGGTATTCAAGTAAGAAAAGGGTGGATGAGAGCGAAATCTTAACTCTAGACAGTATAAGGCACTCTTTGATTCGACAAGAGGATAGCATAATATTTAGCCTTTTGGAAAGGACTCAGTATTGTTATAATGCAGACACATATGACCATGACACCTTCTCGATGGAAGGATTTCGTGGGTCACTGGTTGAGTTTATGGTCAGGGAAACTGAAAAACTCCATGCCCAGGTGGGGAGATACAAGAGCCCGGATGAACATCCTTTCTTCCCAGCACACTTACCTGAGCCAATGCTTCCTCCTTTGCAGTACCCTCAGGTTTTGCATCCGCATGCCGATTCAATTAATATAAACAATAAGGTTTGGAATATGTACTTTAGAGATCTCCTTCCCAGATTAGTCAAAGCAGGAGACGATGGTAATTGTGGATCAGCTGCTGTTTGTGACACACTTTGTTTGCAGGCGCTCTCGAAGAGAATTCACTATGGTAAATTCGTGGCAGAGGCAAAATTCCGTCAATCCCCTGCAGAATACGAGGCTGCCATTAGAGCACAAGACGGAAATCAACTGATGGCGCTGCTGACGTTTGAAACAGTTGAAGCAGCGATCAAGAGGAGAGTGGAGATGAAAACGAAAACGTATGGGCAGGAGGTTAAAATCCACGAAGGGGAAGATAATGCAGCTAACCCTGCATATAAAATCAAGCCACATTTGGTTGCCAGTCTCTATGGGGATTGGATCATGCCTCTCACAAAGCAAGTTCAGGTTGAATACCTCTTGAGAAGATTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

37.01

Weight (kDa)

8.24

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	208 - 317	2.1e-08	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69370
fragaria_vesca	FvH4_4g30560
malus_domestica	MD13G1066600.v1.1 MD16G1065700.v1.1
prunus_persica	Prupe.1G281400_v2.0.a1
pyrus_communis	pycom16g05730
rosa_chinensis	RchiOBHm_Chr4g0438951
rosa_laevigata	RLG00000006316
rosa_multiflora	Rmu_sc0005887.1_g000005 Rmu_sc0023005.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379960
rosa_rugosa	Rorug04G0314500 Rorug04G0314500
rosa_samantha	Rh4AG365200 Rh4BG376400 Rh4CG390500 Rh4DG371100
rosa_wichuraiana	Rw0G007350 Rw0G016900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	2 cut(s)	622, 932
AcsI	RAATTY	3 cut(s)	663, 677, 695
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	2 cut(s)	497, 560
AfiI	CCNNNNNNNGG	3 cut(s)	415, 420, 853
AgsI	TTSAA	6 cut(s)	27, 201, 528, 776, 785, 956
AjnI	CCWGG	1 cut(s)	414
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	4 cut(s)	13, 23, 620, 869
AluI	AGCT	4 cut(s)	13, 23, 620, 869
Alw21I	GWGCWC	1 cut(s)	739
Alw26I	GTCTC	2 cut(s)	591, 914
AlwI	GGATC	2 cut(s)	622, 932
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	6 cut(s)	176, 620, 725, 763, 788, 866
ApoI	RAATTY	3 cut(s)	663, 677, 695
AseI	ATTAAT	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	360
AspLEI	GCGC	2 cut(s)	652, 763
AsuC2I	CCSGG	2 cut(s)	135, 437
AxyI	CCTNAGG	1 cut(s)	501
BanII	GRGCYC	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	739
BbvI	GCAGC	6 cut(s)	163, 607, 712, 750, 800, 878
BccI	CCATC	4 cut(s)	197, 346, 596, 751
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	2 cut(s)	135, 437
BcoDI	GTCTC	2 cut(s)	591, 914
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	711
BfoI	RGCGCY	2 cut(s)	653, 764
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	6 cut(s)	177, 621, 726, 764, 789, 867
BlsI	GCNGC	6 cut(s)	178, 622, 727, 765, 790, 868
Bme1390I	CCNGG	3 cut(s)	135, 416, 437
BmrFI	CCNGG	3 cut(s)	135, 416, 437
BmsI	GCATC	1 cut(s)	520
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	2 cut(s)	135, 437
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 420, 853
Bse1I	ACTGG	2 cut(s)	378, 906
Bse21I	CCTNAGG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	5 cut(s)	10, 223, 445, 445, 511
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	415, 420, 853
BseMII	CTCAG	3 cut(s)	320, 462, 515
BseNI	ACTGG	2 cut(s)	378, 906
BseRI	GAGGAG	1 cut(s)	814
BseXI	GCAGC	6 cut(s)	163, 607, 712, 750, 800, 878
BseYI	CCCAGC	1 cut(s)	457
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	739
BsiSI	CCGG	2 cut(s)	135, 437
BslI	CCNNNNNNNGG	3 cut(s)	415, 420, 853
BsmAI	GTCTC	2 cut(s)	591, 914
BsmBI	CGTCTC	1 cut(s)	591
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	437, 739
Bsp143I	GATC	5 cut(s)	125, 568, 614, 792, 924
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	3 cut(s)	319, 463, 514
BspMAI	CTGCAG	1 cut(s)	715
BspPI	GGATC	2 cut(s)	622, 932
BsrI	ACTGG	2 cut(s)	378, 906
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	5 cut(s)	125, 568, 614, 792, 924
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	4 cut(s)	116, 152, 245, 781
Bst6I	CTCTTC	1 cut(s)	653
BstC8I	GCNNGC	3 cut(s)	21, 519, 648
BstDEI	CTNAG	3 cut(s)	306, 471, 501
BstF5I	GGATG	5 cut(s)	10, 223, 445, 445, 511
BstH2I	RGCGCY	2 cut(s)	653, 764
BstHHI	GCGC	2 cut(s)	652, 763
BstKTI	GATC	5 cut(s)	128, 571, 617, 795, 927
BstMAI	GTCTC	2 cut(s)	591, 914
BstMBI	GATC	5 cut(s)	125, 568, 614, 792, 924
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 734, 875
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	3 cut(s)	133, 414, 435
BstSFI	CTRYAG	1 cut(s)	711
BstV1I	GCAGC	6 cut(s)	163, 607, 712, 750, 800, 878
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
Bsu36I	CCTNAGG	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	5 cut(s)	10, 223, 445, 445, 511
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	3 cut(s)	21, 519, 648
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	2 cut(s)	652, 763
Csp6I	GTAC	2 cut(s)	496, 559
CviAII	CATG	4 cut(s)	338, 410, 518, 928
CviQI	GTAC	2 cut(s)	496, 559
DdeI	CTNAG	3 cut(s)	306, 471, 501
DpnI	GATC	5 cut(s)	127, 570, 616, 794, 926
DpnII	GATC	5 cut(s)	125, 568, 614, 792, 924
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
Eco147I	AGGCCT	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	24
Eco81I	CCTNAGG	1 cut(s)	501
EcoRI	GAATTC	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	437
Esp3I	CGTCTC	1 cut(s)	591
FaeI	CATG	4 cut(s)	341, 413, 521, 931
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FatI	CATG	4 cut(s)	337, 409, 517, 927
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	6 cut(s)	177, 621, 726, 764, 789, 867
FokI	GGATG	5 cut(s)	17, 230, 432, 452, 498
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	6 cut(s)	177, 621, 726, 764, 789, 867
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	2 cut(s)	651, 762
GluI	GCNGC	6 cut(s)	177, 621, 726, 764, 789, 867
GsaI	CCCAGC	1 cut(s)	461
HaeII	RGCGCY	2 cut(s)	653, 764
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	2 cut(s)	135, 437
HhaI	GCGC	2 cut(s)	652, 763
Hin1II	CATG	4 cut(s)	341, 413, 521, 931
Hin6I	GCGC	2 cut(s)	650, 761
HinP1I	GCGC	2 cut(s)	650, 761
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	3 cut(s)	262, 304, 524
HpaII	CCGG	2 cut(s)	135, 437
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	125
Hpy188III	TCNNGA	5 cut(s)	239, 349, 655, 796, 964
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	5 cut(s)	72, 350, 355, 584, 845
HpyCH4III	ACNGT	4 cut(s)	116, 152, 245, 781
HpyCH4IV	ACGT	2 cut(s)	770, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 734, 875
HpyF3I	CTNAG	3 cut(s)	306, 471, 501
HpySE526I	ACGT	2 cut(s)	770, 824
Hsp92II	CATG	4 cut(s)	341, 413, 521, 931
HspAI	GCGC	2 cut(s)	650, 761
Kzo9I	GATC	5 cut(s)	125, 568, 614, 792, 924
Lsp1109I	GCAGC	6 cut(s)	163, 607, 712, 750, 800, 878
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	2 cut(s)	770, 824
MaeIII	GTNAC	2 cut(s)	369, 629
MalI	GATC	5 cut(s)	127, 570, 616, 794, 926
MboI	GATC	5 cut(s)	125, 568, 614, 792, 924
MboII	GAAGA	6 cut(s)	150, 159, 445, 670, 869, 981
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	2 cut(s)	437, 739
MluCI	AATT	6 cut(s)	27, 528, 607, 663, 677, 695
MlyI	GAGTC	1 cut(s)	298
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	4 cut(s)	233, 531, 840, 979
MslI	CAYNNNNRTG	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	2 cut(s)	135, 437
MspR9I	CCNGG	3 cut(s)	135, 416, 437
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	3 cut(s)	50, 734, 875
NciI	CCSGG	2 cut(s)	135, 437
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	5 cut(s)	125, 568, 614, 792, 924
NlaIII	CATG	4 cut(s)	341, 413, 521, 931
NmuCI	GTSAC	2 cut(s)	369, 629
NspI	RCATGY	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	521
PceI	AGGCCT	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	262, 524
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	6 cut(s)	178, 622, 727, 765, 790, 868
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PshBI	ATTAAT	1 cut(s)	531
PsiI	TTATAA	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	414
PstI	CTGCAG	1 cut(s)	715
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	568
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	2 cut(s)	497, 560
RsaNI	GTAC	2 cut(s)	496, 559
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	4 cut(s)	233, 531, 840, 979
SatI	GCNGC	6 cut(s)	177, 621, 726, 764, 789, 867
Sau3AI	GATC	5 cut(s)	125, 568, 614, 792, 924
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	3 cut(s)	135, 416, 437
SduI	GDGCHC	2 cut(s)	437, 739
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	1 cut(s)	711
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	2 cut(s)	55, 964
SmoI	CTYRAG	2 cut(s)	55, 964
SphI	GCATGC	1 cut(s)	521
Sse9I	AATT	6 cut(s)	27, 528, 607, 663, 677, 695
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	515
SspI	AATATT	1 cut(s)	285
SspMI	CTAG	1 cut(s)	239
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	3 cut(s)	133, 414, 435
TaaI	ACNGT	4 cut(s)	116, 152, 245, 781
TaiI	ACGT	2 cut(s)	773, 827
TaqI	TCGA	3 cut(s)	265, 350, 656
TasI	AATT	6 cut(s)	27, 528, 607, 663, 677, 695
TatI	WGTACW	1 cut(s)	558
TfiI	GAWTC	2 cut(s)	262, 524
Tru1I	TTAA	4 cut(s)	233, 531, 840, 979
Tru9I	TTAA	4 cut(s)	233, 531, 840, 979
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	2 cut(s)	369, 629
TseI	GCWGC	6 cut(s)	176, 620, 725, 763, 788, 866
Tsp45I	GTSAC	2 cut(s)	369, 629
TspDTI	ATGAA	2 cut(s)	456, 827
TspGWI	ACGGA	2 cut(s)	689, 759
TspRI	CASTG	1 cut(s)	378
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	3 cut(s)	663, 677, 695
XbaI	TCTAGA	1 cut(s)	238
XceI	RCATGY	1 cut(s)	521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.