Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011776

Physical Location & Seq

Genomic Coordinates Forward (+)

60151947 .. 60154341

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGACGCCAAGTTGTTACAACCTTCAGTCCCCAACATTTCAGTCTACAGTATCCTAAAGTCCTCAAGACCCGATTCCCATTTGGTCTCCAAGATCATTCTTACAACCTCCAGCCATAGCTTTCCATGCAATCCAGAAAGAAAACAGACCCTTAATGCTGCTATGGCCCTGCAAGCTTCTTCTTCTCCATCCCATCTCATCGGATATTCAGAGAAGAAAAGAGTAGATGCGAGTGAAAGCTTGACTCTAGACAGTATTAGACACTCTTTGATTCGACAAGAGGATGACATAATATTTAGCCTTTTGGAGAGGGCACAGTATTGTTACAATGCTGACACTTATGACCGTGATGCCTTCTCAATGGAAGGATTTCATGGTTCGCTGGTGGAATTCATGCTCAGGGAAACTGAAAAGCTCCATGCGCAGGTTGGCAGATACAAGAGCCCAGATGAACATCCTTTCTTCCCGGCACATTTACCAGAGCCAATGCTTCCTCCTTTGCAGTATCCCCAGGTTCTACATCCTTGTGCTGGTTCGATTAATATAAACAACAAAGTTTGGAACATGTATTTTAGAGATCTTCTTCCCAGATTAGTCAAACAAGGAGATGATGGTAATTGTGGATCAGCTGCTGTTTTTGACACCCTTTGCTTGCAGGCACTCTCGAAGAGAATCCACTATGGTAAATTTGTTGCAGAGGCAAAATTCCGACAATCCCCTGCAGACTATGAGCCTGCCATTAGAGCACAAGACAGGATGCAATTGATGAGCTTGCTGACATTTGAAACAGTGGAAGCAGCTATCAAGAAGAGAGTAGAGATGAAAACTAAAACACTTGGCCAGGAGGTCAAAATCAACCAAGACGAAGACGATGCTAATCCTGTATATAAGATCAAGCCAAATCTAGTTGCCGCTCTGTATGGGGATTGGATCATGCCTCTGACAAAGGAAGTTCAGGTTGAATACCTATTGAGAAGACTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

37.28

Weight (kDa)

6.56

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	212 - 319	6.7e-08	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69370
fragaria_vesca	FvH4_4g30560
malus_domestica	MD13G1066600.v1.1 MD16G1065700.v1.1
prunus_persica	Prupe.1G281400_v2.0.a1
pyrus_communis	pycom16g05730
rosa_chinensis	RchiOBHm_Chr4g0438951
rosa_laevigata	RLG00000006316
rosa_multiflora	Rmu_sc0005887.1_g000005 Rmu_sc0023005.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379960
rosa_rugosa	Rorug04G0314500 Rorug04G0314500
rosa_samantha	Rh4AG365200 Rh4BG376400 Rh4CG390500 Rh4DG371100
rosa_wichuraiana	Rw0G007350 Rw0G016900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	423
Acc36I	ACCTGC	1 cut(s)	415
AccBSI	CCGCTC	1 cut(s)	914
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	912
AclWI	GGATC	2 cut(s)	631, 938
AcoI	YGGCCR	1 cut(s)	838
AcsI	RAATTY	3 cut(s)	389, 686, 704
AcuI	CTGAAG	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	6
AfiI	CCNNNNNNNGG	2 cut(s)	424, 530
AflIII	ACRYGT	1 cut(s)	564
AgsI	TTSAA	2 cut(s)	785, 962
AjnI	CCWGG	2 cut(s)	510, 840
AluBI	AGCT	7 cut(s)	120, 176, 240, 415, 629, 771, 800
AluI	AGCT	7 cut(s)	120, 176, 240, 415, 629, 771, 800
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	2 cut(s)	631, 938
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	2 cut(s)	165, 838
ApeKI	GCWGC	3 cut(s)	158, 629, 797
ApoI	RAATTY	3 cut(s)	389, 686, 704
AseI	ATTAAT	1 cut(s)	540
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	316
BalI	TGGCCA	1 cut(s)	840
BanII	GRGCYC	1 cut(s)	446
BbsI	GAAGAC	2 cut(s)	873, 982
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	3 cut(s)	145, 616, 809
BccI	CCATC	3 cut(s)	196, 201, 605
BcgI	CGANNNNNNTGC	2 cut(s)	854, 888
BciT130I	CCWGG	2 cut(s)	512, 842
BciVI	GTATCC	2 cut(s)	62, 516
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	2 cut(s)	248, 905
BfmI	CTRYAG	2 cut(s)	46, 720
BfuAI	ACCTGC	1 cut(s)	415
BfuI	GTATCC	2 cut(s)	62, 516
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	4 cut(s)	159, 630, 798, 912
BlsI	GCNGC	4 cut(s)	160, 631, 799, 913
Bme1390I	CCNGG	3 cut(s)	467, 512, 842
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	3 cut(s)	467, 512, 842
BmsI	GCATC	4 cut(s)	217, 340, 747, 862
BpiI	GAAGAC	2 cut(s)	873, 982
BpmI	CTGGAG	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	467
BsaBI	GATNNNNATC	2 cut(s)	453, 876
BsaHI	GRCGYC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 530
Bse1I	ACTGG	1 cut(s)	984
Bse8I	GATNNNNATC	2 cut(s)	453, 876
BseBI	CCWGG	2 cut(s)	512, 842
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	5 cut(s)	188, 289, 454, 520, 762
BseJI	GATNNNNATC	2 cut(s)	453, 876
BseLI	CCNNNNNNNGG	2 cut(s)	424, 530
BseMII	CTCAG	1 cut(s)	412
BseNI	ACTGG	1 cut(s)	984
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	3 cut(s)	145, 616, 809
BshFI	GGCC	2 cut(s)	167, 840
BsiHKAI	GWGCWC	1 cut(s)	748
BsiSI	CCGG	1 cut(s)	467
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	424, 530
BsmAI	GTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	167, 840
Bso31I	GGTCTC	1 cut(s)	91
Bsp1286I	GDGCHC	3 cut(s)	316, 446, 748
Bsp143I	GATC	5 cut(s)	93, 577, 623, 891, 930
BspACI	CCGC	1 cut(s)	912
BspANI	GGCC	2 cut(s)	167, 840
BspCNI	CTCAG	1 cut(s)	411
BspMAI	CTGCAG	1 cut(s)	724
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	2 cut(s)	631, 938
BspTNI	GGTCTC	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	914
BsrI	ACTGG	1 cut(s)	984
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	5 cut(s)	93, 577, 623, 891, 930
BssNI	GRCGYC	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	512, 842
Bst4CI	ACNGT	5 cut(s)	50, 254, 318, 347, 790
Bst6I	CTCTTC	2 cut(s)	662, 803
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	5 cut(s)	174, 653, 657, 735, 773
BstDEI	CTNAG	1 cut(s)	398
BstF5I	GGATG	5 cut(s)	188, 289, 454, 520, 762
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	5 cut(s)	96, 580, 626, 894, 933
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	5 cut(s)	93, 577, 623, 891, 930
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 164, 173, 421, 743
BstNI	CCWGG	2 cut(s)	512, 842
BstNSI	RCATGY	1 cut(s)	568
BstSCI	CCNGG	3 cut(s)	465, 510, 840
BstSFI	CTRYAG	2 cut(s)	46, 720
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	3 cut(s)	145, 616, 809
BstV2I	GAAGAC	2 cut(s)	873, 982
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuI	GTATCC	2 cut(s)	62, 516
BsuRI	GGCC	2 cut(s)	167, 840
BtsCI	GGATG	5 cut(s)	188, 289, 454, 520, 762
BtsIMutI	CAGTG	1 cut(s)	795
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	5 cut(s)	174, 653, 657, 735, 773
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	1 cut(s)	14
CviAII	CATG	6 cut(s)	126, 374, 394, 419, 565, 934
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	5 cut(s)	95, 579, 625, 893, 932
DpnII	GATC	5 cut(s)	93, 577, 623, 891, 930
EaeI	YGGCCR	1 cut(s)	838
Eam1104I	CTCTTC	2 cut(s)	662, 803
EarI	CTCTTC	2 cut(s)	662, 803
Eco24I	GRGCYC	1 cut(s)	446
Eco31I	GGTCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	9
EcoRI	GAATTC	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	510, 840
EcoT38I	GRGCYC	1 cut(s)	446
FaeI	CATG	6 cut(s)	129, 377, 397, 422, 568, 937
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	6 cut(s)	125, 373, 393, 418, 564, 933
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	159, 630, 798, 912
FokI	GGATG	5 cut(s)	175, 296, 441, 507, 769
FriOI	GRGCYC	1 cut(s)	446
Fsp4HI	GCNGC	4 cut(s)	159, 630, 798, 912
FspBI	CTAG	2 cut(s)	248, 905
FspI	TGCGCA	1 cut(s)	423
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	4 cut(s)	159, 630, 798, 912
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	2 cut(s)	167, 840
HapII	CCGG	1 cut(s)	467
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	424
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	6 cut(s)	129, 377, 397, 422, 568, 937
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HindIII	AAGCTT	2 cut(s)	174, 238
HinfI	GANTC	4 cut(s)	74, 244, 271, 672
HpaII	CCGG	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	4 cut(s)	203, 211, 710, 942
Hpy188III	TCNNGA	5 cut(s)	66, 134, 248, 664, 805
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	33, 359, 364
HpyCH4III	ACNGT	5 cut(s)	50, 254, 318, 347, 790
HpyCH4V	TGCA	7 cut(s)	129, 172, 502, 655, 695, 722, 760
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 164, 173, 421, 743
HpyF3I	CTNAG	1 cut(s)	398
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	6 cut(s)	129, 377, 397, 422, 568, 937
HspAI	GCGC	1 cut(s)	422
Kzo9I	GATC	5 cut(s)	93, 577, 623, 891, 930
LmnI	GCTCC	1 cut(s)	420
Lsp1109I	GCAGC	3 cut(s)	145, 616, 809
LweI	GCATC	4 cut(s)	217, 340, 747, 862
MaeI	CTAG	2 cut(s)	248, 905
MaeIII	GTNAC	2 cut(s)	15, 323
MalI	GATC	5 cut(s)	95, 579, 625, 893, 932
MbiI	CCGCTC	1 cut(s)	914
MboI	GATC	5 cut(s)	93, 577, 623, 891, 930
MfeI	CAATTG	1 cut(s)	761
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	3 cut(s)	316, 446, 748
MlsI	TGGCCA	1 cut(s)	840
MluCI	AATT	5 cut(s)	389, 616, 686, 704, 761
MluNI	TGGCCA	1 cut(s)	840
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	8 cut(s)	73, 118, 274, 303, 504, 691, 838, 948
Mox20I	TGGCCA	1 cut(s)	840
MroXI	GAANNNNTTC	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	840
MseI	TTAA	2 cut(s)	153, 540
MslI	CAYNNNNRTG	1 cut(s)	525
Msp20I	TGGCCA	1 cut(s)	840
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	3 cut(s)	467, 512, 842
MunI	CAATTG	1 cut(s)	761
MvaI	CCWGG	2 cut(s)	512, 842
MwoI	GCNNNNNNNGC	5 cut(s)	126, 164, 173, 421, 743
NciI	CCSGG	1 cut(s)	467
NdeII	GATC	5 cut(s)	93, 577, 623, 891, 930
NlaIII	CATG	6 cut(s)	129, 377, 397, 422, 568, 937
NsbI	TGCGCA	1 cut(s)	423
NspI	RCATGY	1 cut(s)	568
PciI	ACATGT	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	74, 271, 672
PkrI	GCNGC	4 cut(s)	160, 631, 799, 913
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PscI	ACATGT	1 cut(s)	564
PshBI	ATTAAT	1 cut(s)	540
Psp6I	CCWGG	2 cut(s)	510, 840
PspGI	CCWGG	2 cut(s)	510, 840
PspPI	GGNCC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	577
PvuII	CAGCTG	1 cut(s)	629
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	153, 540
SatI	GCNGC	4 cut(s)	159, 630, 798, 912
Sau3AI	GATC	5 cut(s)	93, 577, 623, 891, 930
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	3 cut(s)	467, 512, 842
SduI	GDGCHC	3 cut(s)	316, 446, 748
SfaNI	GCATC	4 cut(s)	217, 340, 747, 862
SfcI	CTRYAG	2 cut(s)	46, 720
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	5 cut(s)	389, 616, 686, 704, 761
SsiI	CCGC	1 cut(s)	912
SspI	AATATT	1 cut(s)	294
SspMI	CTAG	2 cut(s)	248, 905
StyD4I	CCNGG	3 cut(s)	465, 510, 840
TaaI	ACNGT	5 cut(s)	50, 254, 318, 347, 790
TaqI	TCGA	3 cut(s)	274, 536, 665
TasI	AATT	5 cut(s)	389, 616, 686, 704, 761
TauI	GCSGC	1 cut(s)	914
TfiI	GAWTC	3 cut(s)	74, 271, 672
Tru1I	TTAA	2 cut(s)	153, 540
Tru9I	TTAA	2 cut(s)	153, 540
TscAI	CASTG	1 cut(s)	795
TseI	GCWGC	3 cut(s)	158, 629, 797
TspDTI	ATGAA	4 cut(s)	362, 382, 465, 836
TspRI	CASTG	1 cut(s)	795
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	3 cut(s)	389, 686, 704
XbaI	TCTAGA	1 cut(s)	247
XceI	RCATGY	1 cut(s)	568
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	2 cut(s)	248, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.