Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023005.1

Orthogroup ID

OG0011776

Physical Location & Seq

Genomic Coordinates Forward (+)

6840 .. 9029

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023005.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atggacgccaagttgttacaaccttcagtccccaacatttcagtctacagtaccctaaagtcctcaagacccgattcccatttggtctccaagatcattcttacaacctccagccatagctttccatgcaatccagaaagaaaacagacccttaatgctgctatggccctgcaagcttcttcttcttctccatcccatctcaccggatatgcagggaagaaaagggtagatgcgagtgaaagcttgactctagacagtattagacactctttgattcgacaagaggatgacataatatttagccttttggagagggcacagtattgttacaatactgacacttatgaccgtgatgccttctcaatggaaggatttcatggttcgctggtggaattcatgctcagggaaactgaaaagctccatgcgcaggttggcagatacaagagcccagatgagcatcctttcttcccggcacatttaccagagccaatgcttcctcctttgcaatatccacaggttctacatccttgtgctggttcgattaatataaacaacaaagtttggaacatgtattttagagatcttcttcccagattagtcaaacaaggagatgatggtaattgtggatcagctgctgtttttgacaccctttgcttgcaggcactctcgaagagaatccactatggtaaatttgttgcagaggcaaaattccgacaatcccctacagactatgagcctgccattcgagcacaagacaggatgcaattgatgagcttgctgacatttgaaacagtggaagcagctatcaagaagagagtagagatgaaaactaaaacacttggccaggaggtcaaaatcaaccaagacgaagacgatgctaatcctgtatataagatcaagccaaatctagttgccgctctgtatggggattggatcatgcctctcacaaaagaagttcaggttgaatacttgttgagaagactggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

37.31

Weight (kDa)

6.8

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69370
fragaria_vesca	FvH4_4g30560
malus_domestica	MD13G1066600.v1.1 MD16G1065700.v1.1
prunus_persica	Prupe.1G281400_v2.0.a1
pyrus_communis	pycom16g05730
rosa_chinensis	RchiOBHm_Chr4g0438951
rosa_laevigata	RLG00000006316
rosa_multiflora	Rmu_sc0005887.1_g000005 Rmu_sc0023005.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379960
rosa_rugosa	Rorug04G0314500 Rorug04G0314500
rosa_samantha	Rh4AG365200 Rh4BG376400 Rh4CG390500 Rh4DG371100
rosa_wichuraiana	Rw0G007350 Rw0G016900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	426
Acc36I	ACCTGC	1 cut(s)	418
AccBSI	CCGCTC	1 cut(s)	917
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	915
AclWI	GGATC	2 cut(s)	634, 941
AcoI	YGGCCR	1 cut(s)	841
AcsI	RAATTY	3 cut(s)	392, 689, 707
AcuI	CTGAAG	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	2 cut(s)	427, 533
AflIII	ACRYGT	1 cut(s)	567
AgsI	TTSAA	2 cut(s)	788, 965
AjnI	CCWGG	1 cut(s)	843
AluBI	AGCT	7 cut(s)	120, 176, 243, 418, 632, 774, 803
AluI	AGCT	7 cut(s)	120, 176, 243, 418, 632, 774, 803
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	2 cut(s)	634, 941
AlwNI	CAGNNNCTG	1 cut(s)	635
AoxI	GGCC	2 cut(s)	165, 841
ApeKI	GCWGC	3 cut(s)	158, 632, 800
ApoI	RAATTY	3 cut(s)	392, 689, 707
AseI	ATTAAT	1 cut(s)	543
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	319
BalI	TGGCCA	1 cut(s)	843
BanII	GRGCYC	1 cut(s)	449
BbsI	GAAGAC	2 cut(s)	876, 985
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	3 cut(s)	145, 619, 812
BccI	CCATC	3 cut(s)	199, 204, 608
BcgI	CGANNNNNNTGC	2 cut(s)	857, 891
BciT130I	CCWGG	1 cut(s)	845
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	2 cut(s)	251, 908
BfmI	CTRYAG	2 cut(s)	46, 723
BfuAI	ACCTGC	1 cut(s)	418
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	4 cut(s)	159, 633, 801, 915
BlsI	GCNGC	4 cut(s)	160, 634, 802, 916
Bme1390I	CCNGG	2 cut(s)	470, 845
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	470, 845
BmsI	GCATC	5 cut(s)	220, 343, 466, 750, 865
BpiI	GAAGAC	2 cut(s)	876, 985
BpmI	CTGGAG	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	470
BsaBI	GATNNNNATC	2 cut(s)	456, 879
BsaHI	GRCGYC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	2 cut(s)	427, 533
Bse1I	ACTGG	1 cut(s)	987
Bse8I	GATNNNNATC	2 cut(s)	456, 879
BseBI	CCWGG	1 cut(s)	845
BseGI	GGATG	5 cut(s)	191, 292, 457, 523, 765
BseJI	GATNNNNATC	2 cut(s)	456, 879
BseLI	CCNNNNNNNGG	2 cut(s)	427, 533
BseMII	CTCAG	1 cut(s)	415
BseNI	ACTGG	1 cut(s)	987
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	3 cut(s)	145, 619, 812
BshFI	GGCC	2 cut(s)	167, 843
BsiHKAI	GWGCWC	1 cut(s)	751
BsiSI	CCGG	2 cut(s)	204, 470
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	427, 533
BsmAI	GTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	167, 843
Bso31I	GGTCTC	1 cut(s)	91
Bsp1286I	GDGCHC	3 cut(s)	319, 449, 751
Bsp143I	GATC	5 cut(s)	93, 580, 626, 894, 933
BspACI	CCGC	1 cut(s)	915
BspANI	GGCC	2 cut(s)	167, 843
BspCNI	CTCAG	1 cut(s)	414
BspMI	ACCTGC	1 cut(s)	418
BspPI	GGATC	2 cut(s)	634, 941
BspTNI	GGTCTC	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	917
BsrI	ACTGG	1 cut(s)	987
BssMI	GATC	5 cut(s)	93, 580, 626, 894, 933
BssNI	GRCGYC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	845
Bst4CI	ACNGT	5 cut(s)	50, 257, 321, 350, 793
Bst6I	CTCTTC	2 cut(s)	665, 806
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	5 cut(s)	174, 656, 660, 738, 776
BstDEI	CTNAG	1 cut(s)	401
BstF5I	GGATG	5 cut(s)	191, 292, 457, 523, 765
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	5 cut(s)	96, 583, 629, 897, 936
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	5 cut(s)	93, 580, 626, 894, 933
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 164, 173, 424, 746
BstNI	CCWGG	1 cut(s)	845
BstNSI	RCATGY	1 cut(s)	571
BstSCI	CCNGG	2 cut(s)	468, 843
BstSFI	CTRYAG	2 cut(s)	46, 723
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	3 cut(s)	145, 619, 812
BstV2I	GAAGAC	2 cut(s)	876, 985
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	167, 843
BtsCI	GGATG	5 cut(s)	191, 292, 457, 523, 765
BtsIMutI	CAGTG	1 cut(s)	798
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	5 cut(s)	174, 656, 660, 738, 776
CaiI	CAGNNNCTG	1 cut(s)	635
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	6 cut(s)	126, 377, 397, 422, 568, 937
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	1 cut(s)	401
DpnI	GATC	5 cut(s)	95, 582, 628, 896, 935
DpnII	GATC	5 cut(s)	93, 580, 626, 894, 933
EaeI	YGGCCR	1 cut(s)	841
Eam1104I	CTCTTC	2 cut(s)	665, 806
EarI	CTCTTC	2 cut(s)	665, 806
Eco24I	GRGCYC	1 cut(s)	449
Eco31I	GGTCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	9
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	843
EcoT38I	GRGCYC	1 cut(s)	449
FaeI	CATG	6 cut(s)	129, 380, 400, 425, 571, 940
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	6 cut(s)	125, 376, 396, 421, 567, 936
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	159, 633, 801, 915
FokI	GGATG	5 cut(s)	178, 299, 444, 510, 772
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	4 cut(s)	159, 633, 801, 915
FspBI	CTAG	2 cut(s)	251, 908
FspI	TGCGCA	1 cut(s)	426
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	4 cut(s)	159, 633, 801, 915
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	2 cut(s)	167, 843
HapII	CCGG	2 cut(s)	204, 470
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	427
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	6 cut(s)	129, 380, 400, 425, 571, 940
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HindIII	AAGCTT	2 cut(s)	174, 241
HinfI	GANTC	4 cut(s)	74, 247, 274, 675
HpaII	CCGG	2 cut(s)	204, 470
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	713
Hpy188III	TCNNGA	5 cut(s)	66, 134, 251, 667, 808
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	33, 362, 367
HpyCH4III	ACNGT	5 cut(s)	50, 257, 321, 350, 793
HpyCH4V	TGCA	7 cut(s)	129, 172, 212, 505, 658, 698, 763
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 164, 173, 424, 746
HpyF3I	CTNAG	1 cut(s)	401
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	6 cut(s)	129, 380, 400, 425, 571, 940
HspAI	GCGC	1 cut(s)	425
Kzo9I	GATC	5 cut(s)	93, 580, 626, 894, 933
LmnI	GCTCC	1 cut(s)	423
Lsp1109I	GCAGC	3 cut(s)	145, 619, 812
LweI	GCATC	5 cut(s)	220, 343, 466, 750, 865
MaeI	CTAG	2 cut(s)	251, 908
MaeIII	GTNAC	2 cut(s)	15, 326
MalI	GATC	5 cut(s)	95, 582, 628, 896, 935
MbiI	CCGCTC	1 cut(s)	917
MboI	GATC	5 cut(s)	93, 580, 626, 894, 933
MfeI	CAATTG	1 cut(s)	764
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	3 cut(s)	319, 449, 751
MlsI	TGGCCA	1 cut(s)	843
MluCI	AATT	5 cut(s)	392, 619, 689, 707, 764
MluNI	TGGCCA	1 cut(s)	843
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	736
MnlI	CCTC	8 cut(s)	73, 118, 277, 306, 507, 694, 841, 951
Mox20I	TGGCCA	1 cut(s)	843
MroXI	GAANNNNTTC	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	843
MseI	TTAA	2 cut(s)	153, 543
MslI	CAYNNNNRTG	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	843
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	2 cut(s)	204, 470
MspR9I	CCNGG	2 cut(s)	470, 845
MunI	CAATTG	1 cut(s)	764
MvaI	CCWGG	1 cut(s)	845
MwoI	GCNNNNNNNGC	5 cut(s)	126, 164, 173, 424, 746
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	5 cut(s)	93, 580, 626, 894, 933
NlaIII	CATG	6 cut(s)	129, 380, 400, 425, 571, 940
NsbI	TGCGCA	1 cut(s)	426
NspI	RCATGY	1 cut(s)	571
PciI	ACATGT	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	74, 274, 675
PkrI	GCNGC	4 cut(s)	160, 634, 802, 916
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PscI	ACATGT	1 cut(s)	567
PshBI	ATTAAT	1 cut(s)	543
Psp6I	CCWGG	1 cut(s)	843
PspGI	CCWGG	1 cut(s)	843
PspPI	GGNCC	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	153, 543
SatI	GCNGC	4 cut(s)	159, 633, 801, 915
Sau3AI	GATC	5 cut(s)	93, 580, 626, 894, 933
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	2 cut(s)	470, 845
SduI	GDGCHC	3 cut(s)	319, 449, 751
SfaNI	GCATC	5 cut(s)	220, 343, 466, 750, 865
SfcI	CTRYAG	2 cut(s)	46, 723
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	5 cut(s)	392, 619, 689, 707, 764
SsiI	CCGC	1 cut(s)	915
SspI	AATATT	1 cut(s)	297
SspMI	CTAG	2 cut(s)	251, 908
StyD4I	CCNGG	2 cut(s)	468, 843
TaaI	ACNGT	5 cut(s)	50, 257, 321, 350, 793
TaqI	TCGA	4 cut(s)	277, 539, 668, 745
TasI	AATT	5 cut(s)	392, 619, 689, 707, 764
TauI	GCSGC	1 cut(s)	917
TfiI	GAWTC	3 cut(s)	74, 274, 675
Tru1I	TTAA	2 cut(s)	153, 543
Tru9I	TTAA	2 cut(s)	153, 543
TscAI	CASTG	1 cut(s)	798
TseI	GCWGC	3 cut(s)	158, 632, 800
TspDTI	ATGAA	3 cut(s)	365, 385, 839
TspRI	CASTG	1 cut(s)	798
VspI	ATTAAT	1 cut(s)	543
XapI	RAATTY	3 cut(s)	392, 689, 707
XbaI	TCTAGA	1 cut(s)	250
XceI	RCATGY	1 cut(s)	571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	2 cut(s)	251, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.