Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0011776

Physical Location & Seq

Genomic Coordinates Forward (+)

58986274 .. 58988450

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG371100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGACGCCAAGTTGTTACAACCTTCAGTCCCCAACATTTCAGTCTACAGTACCCCAAAGGATTCCCATTTGGTCTCCAAGATCATTCTTACAACCTCCAGCCATAGCTTTCCATGCAATCCAGAAAGAAAACAGACCCTTAATGCTGCTATGGCCCTGCAAGCTTCTTCTTCTCCATCCCATCTCATCGGATATTCAGGGAAGAAAAGGGTAGATGCGAGTGAAAGCTTGACTCTAGACAGTATTAGACACTCTTTGATTCGACAAGAGGATGACATAATATTTAGCCTTTTGGAGAGGGCACAGTATTGTTACAATACTGACACTTACGACCGTGATGCCTTCTCAATGGAAGGATTTCATGGTTCGCTGGTGGAATTCATGCTCAGGGAAACTGAAAAGCTCCATGCGCAGGTTGGCAGATACAAGAGCCCAGATGAGCATCCTTTCTTCCCGGCACATTTACCAGAGCCAATGCTTCCTCCTTTGCAATATCCACAGGTTCTACATCCTTGTGCTGGTTCGATTAATATAAACAACAAAGTTTGGAACATGTATTTTAGAGATCTTCTTCCCAGATTAGTCAAACAAGGAGATGATGGTAATTGTGGATCAGCTGCTGTTTTTGACACCCTTTGCTTGCAGGCACTCTCGAAGAGAATCCACTATGGTAAATTTGTTGCAGAGGCAAAATTCCGACAATCCCCTGCAGACTATGAGCCTGCCATTAGAGCACAAGACAGGATGCAATTGATGAGCTTGCTGACATTTGAAACAGTGGAAGCAGCTATCAAGAAGAGAGTAGAGATGAAAACTAAAACACTTGGCCAGGAGGTCAAAATCAACCAAGACGAAGACGATGCTAATCCTGTATATAAGATCAAGCCAAATCTAGTTGCCGCTCTGTATGGGGATTGGATCATGCCTCTCACAAAGGAAGTTCAGGTTGAATACTTATTGAGAAGACTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

36.78

Weight (kDa)

6.56

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	208 - 315	6.5e-08	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69370
fragaria_vesca	FvH4_4g30560
malus_domestica	MD13G1066600.v1.1 MD16G1065700.v1.1
prunus_persica	Prupe.1G281400_v2.0.a1
pyrus_communis	pycom16g05730
rosa_chinensis	RchiOBHm_Chr4g0438951
rosa_laevigata	RLG00000006316
rosa_multiflora	Rmu_sc0005887.1_g000005 Rmu_sc0023005.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379960
rosa_rugosa	Rorug04G0314500 Rorug04G0314500
rosa_samantha	Rh4AG365200 Rh4BG376400 Rh4CG390500 Rh4DG371100
rosa_wichuraiana	Rw0G007350 Rw0G016900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	411
Acc36I	ACCTGC	1 cut(s)	403
AccBSI	CCGCTC	1 cut(s)	902
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	900
AclWI	GGATC	2 cut(s)	619, 926
AcoI	YGGCCR	1 cut(s)	826
AcsI	RAATTY	3 cut(s)	377, 674, 692
AcuI	CTGAAG	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	2 cut(s)	412, 518
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	2 cut(s)	773, 950
AjnI	CCWGG	1 cut(s)	828
AluBI	AGCT	7 cut(s)	108, 164, 228, 403, 617, 759, 788
AluI	AGCT	7 cut(s)	108, 164, 228, 403, 617, 759, 788
Alw21I	GWGCWC	1 cut(s)	736
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	2 cut(s)	619, 926
AlwNI	CAGNNNCTG	1 cut(s)	620
AoxI	GGCC	2 cut(s)	153, 826
ApeKI	GCWGC	3 cut(s)	146, 617, 785
ApoI	RAATTY	3 cut(s)	377, 674, 692
AseI	ATTAAT	1 cut(s)	528
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	455
BaeGI	GKGCMC	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	828
BanII	GRGCYC	1 cut(s)	434
BbsI	GAAGAC	2 cut(s)	861, 970
Bbv12I	GWGCWC	1 cut(s)	736
BbvI	GCAGC	3 cut(s)	133, 604, 797
BccI	CCATC	3 cut(s)	184, 189, 593
BcgI	CGANNNNNNTGC	4 cut(s)	320, 354, 842, 876
BciT130I	CCWGG	1 cut(s)	830
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	2 cut(s)	236, 893
BfmI	CTRYAG	2 cut(s)	46, 708
BfuAI	ACCTGC	1 cut(s)	403
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	4 cut(s)	147, 618, 786, 900
BlsI	GCNGC	4 cut(s)	148, 619, 787, 901
Bme1390I	CCNGG	2 cut(s)	455, 830
BmgT120I	GGNCC	1 cut(s)	154
BmrFI	CCNGG	2 cut(s)	455, 830
BmsI	GCATC	5 cut(s)	205, 328, 451, 735, 850
BpiI	GAAGAC	2 cut(s)	861, 970
BpmI	CTGGAG	1 cut(s)	82
Bpu10I	CCTNAGC	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	455
BsaBI	GATNNNNATC	2 cut(s)	441, 864
BsaHI	GRCGYC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 518
Bse1I	ACTGG	1 cut(s)	972
Bse8I	GATNNNNATC	2 cut(s)	441, 864
BseBI	CCWGG	1 cut(s)	830
BseGI	GGATG	5 cut(s)	176, 277, 442, 508, 750
BseJI	GATNNNNATC	2 cut(s)	441, 864
BseLI	CCNNNNNNNGG	2 cut(s)	412, 518
BseMII	CTCAG	1 cut(s)	400
BseNI	ACTGG	1 cut(s)	972
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	3 cut(s)	133, 604, 797
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	2 cut(s)	155, 828
BsiEI	CGRYCG	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	736
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	412, 518
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	155, 828
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	3 cut(s)	304, 434, 736
Bsp143I	GATC	5 cut(s)	81, 565, 611, 879, 918
BspACI	CCGC	1 cut(s)	900
BspANI	GGCC	2 cut(s)	155, 828
BspCNI	CTCAG	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	712
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	2 cut(s)	619, 926
BspTNI	GGTCTC	1 cut(s)	79
BsrBI	CCGCTC	1 cut(s)	902
BsrI	ACTGG	1 cut(s)	972
BssMI	GATC	5 cut(s)	81, 565, 611, 879, 918
BssNI	GRCGYC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	830
Bst4CI	ACNGT	5 cut(s)	50, 242, 306, 335, 778
Bst6I	CTCTTC	2 cut(s)	650, 791
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	5 cut(s)	162, 641, 645, 723, 761
BstDEI	CTNAG	1 cut(s)	386
BstF5I	GGATG	5 cut(s)	176, 277, 442, 508, 750
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	5 cut(s)	84, 568, 614, 882, 921
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	5 cut(s)	81, 565, 611, 879, 918
BstMCI	CGRYCG	1 cut(s)	334
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 152, 161, 409, 731
BstNI	CCWGG	1 cut(s)	830
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	2 cut(s)	453, 828
BstSFI	CTRYAG	2 cut(s)	46, 708
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	3 cut(s)	133, 604, 797
BstV2I	GAAGAC	2 cut(s)	861, 970
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	155, 828
BtsCI	GGATG	5 cut(s)	176, 277, 442, 508, 750
BtsIMutI	CAGTG	1 cut(s)	783
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	5 cut(s)	162, 641, 645, 723, 761
CaiI	CAGNNNCTG	1 cut(s)	620
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	6 cut(s)	114, 362, 382, 407, 553, 922
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	5 cut(s)	83, 567, 613, 881, 920
DpnII	GATC	5 cut(s)	81, 565, 611, 879, 918
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	2 cut(s)	650, 791
EarI	CTCTTC	2 cut(s)	650, 791
Eco24I	GRGCYC	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	9
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	828
EcoT38I	GRGCYC	1 cut(s)	434
FaeI	CATG	6 cut(s)	117, 365, 385, 410, 556, 925
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	6 cut(s)	113, 361, 381, 406, 552, 921
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	147, 618, 786, 900
FokI	GGATG	5 cut(s)	163, 284, 429, 495, 757
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	4 cut(s)	147, 618, 786, 900
FspBI	CTAG	2 cut(s)	236, 893
FspI	TGCGCA	1 cut(s)	411
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	4 cut(s)	147, 618, 786, 900
GsuI	CTGGAG	1 cut(s)	82
HaeIII	GGCC	2 cut(s)	155, 828
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	412
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	6 cut(s)	117, 365, 385, 410, 556, 925
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HindIII	AAGCTT	2 cut(s)	162, 226
HinfI	GANTC	4 cut(s)	62, 232, 259, 660
HpaII	CCGG	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	191, 698
Hpy188III	TCNNGA	4 cut(s)	122, 236, 652, 793
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	33, 347, 352
HpyCH4III	ACNGT	5 cut(s)	50, 242, 306, 335, 778
HpyCH4V	TGCA	7 cut(s)	117, 160, 490, 643, 683, 710, 748
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 152, 161, 409, 731
HpyF3I	CTNAG	1 cut(s)	386
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	6 cut(s)	117, 365, 385, 410, 556, 925
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	5 cut(s)	81, 565, 611, 879, 918
LmnI	GCTCC	1 cut(s)	408
Lsp1109I	GCAGC	3 cut(s)	133, 604, 797
LweI	GCATC	5 cut(s)	205, 328, 451, 735, 850
MaeI	CTAG	2 cut(s)	236, 893
MaeIII	GTNAC	2 cut(s)	15, 311
MalI	GATC	5 cut(s)	83, 567, 613, 881, 920
MbiI	CCGCTC	1 cut(s)	902
MboI	GATC	5 cut(s)	81, 565, 611, 879, 918
MfeI	CAATTG	1 cut(s)	749
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	3 cut(s)	304, 434, 736
MlsI	TGGCCA	1 cut(s)	828
MluCI	AATT	5 cut(s)	377, 604, 674, 692, 749
MluNI	TGGCCA	1 cut(s)	828
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	721
MnlI	CCTC	7 cut(s)	106, 262, 291, 492, 679, 826, 936
Mox20I	TGGCCA	1 cut(s)	828
MroXI	GAANNNNTTC	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	2 cut(s)	141, 528
MslI	CAYNNNNRTG	1 cut(s)	513
Msp20I	TGGCCA	1 cut(s)	828
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	2 cut(s)	455, 830
MunI	CAATTG	1 cut(s)	749
MvaI	CCWGG	1 cut(s)	830
MwoI	GCNNNNNNNGC	5 cut(s)	114, 152, 161, 409, 731
NciI	CCSGG	1 cut(s)	455
NdeII	GATC	5 cut(s)	81, 565, 611, 879, 918
NlaIII	CATG	6 cut(s)	117, 365, 385, 410, 556, 925
NsbI	TGCGCA	1 cut(s)	411
NspI	RCATGY	1 cut(s)	556
PciI	ACATGT	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	62, 259, 660
PkrI	GCNGC	4 cut(s)	148, 619, 787, 901
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PscI	ACATGT	1 cut(s)	552
PshBI	ATTAAT	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	828
PspGI	CCWGG	1 cut(s)	828
PspPI	GGNCC	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	513
SaqAI	TTAA	2 cut(s)	141, 528
SatI	GCNGC	4 cut(s)	147, 618, 786, 900
Sau3AI	GATC	5 cut(s)	81, 565, 611, 879, 918
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	455, 830
SduI	GDGCHC	3 cut(s)	304, 434, 736
SfaNI	GCATC	5 cut(s)	205, 328, 451, 735, 850
SfcI	CTRYAG	2 cut(s)	46, 708
SmiMI	CAYNNNNRTG	1 cut(s)	513
Sse9I	AATT	5 cut(s)	377, 604, 674, 692, 749
SsiI	CCGC	1 cut(s)	900
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	2 cut(s)	236, 893
StyD4I	CCNGG	2 cut(s)	453, 828
TaaI	ACNGT	5 cut(s)	50, 242, 306, 335, 778
TaqI	TCGA	3 cut(s)	262, 524, 653
TasI	AATT	5 cut(s)	377, 604, 674, 692, 749
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	3 cut(s)	62, 259, 660
Tru1I	TTAA	2 cut(s)	141, 528
Tru9I	TTAA	2 cut(s)	141, 528
TscAI	CASTG	1 cut(s)	783
TseI	GCWGC	3 cut(s)	146, 617, 785
TspDTI	ATGAA	3 cut(s)	350, 370, 824
TspRI	CASTG	1 cut(s)	783
VspI	ATTAAT	1 cut(s)	528
XapI	RAATTY	3 cut(s)	377, 674, 692
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	2 cut(s)	236, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.