Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011776

Physical Location & Seq

Genomic Coordinates Forward (+)

3675233 .. 3677508

Gene Structure 2276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05730.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGATGCCAAGCTCTTGCAAGCTCCAATTCCCAATGCTTCAGCCCACAGCGCCTCAAGGCCTTCACTACCCACTCCCCAGTTGGTCAACCACACCATTTTTAGCACCCCCAACGGTGTTTTCGGATCAAATCCCGGAAGAAAACTGCGCCGTCCTCTCCAAGTTTCTTCTTTTTCTGCAACTTCTCCCATCAGGTATTCAAGGAAGAAAAGGGTGGATGAGAGCGAAATCTTGACCCTAGACAGTATAAGGCACTCTTTGATTCGACAAGAGGATAGCATAATATTTAGCCTTTTGGAAAGGACTCAGTATTGTTATAATGCAGACACATATGACCATGACACCTTCTCGATGGAAGGATTTCGCGGGTCACTGGTTGAGTTTATGGTCAGGGAAACTGAAAAACTCCATGCTCGGGTGGGGAGATACAAGAGCCCGGATGAACATCCCTTCTTCCCAGCACACTTACCTGAGCCAATGCTTCCTCCTTTGCAGTACCCTCGGGTTTTGCATCCGCATGCCGATTCAATTAATATAAACAATAAGGTTTGGAATATGTACTTTAGAGATCTCTCTTCCCAGATTAGTCAAAGCAGGAGACGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

23.33

Weight (kDa)

9.62

Isoelectric Point (pI)

62.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69370
fragaria_vesca	FvH4_4g30560
malus_domestica	MD13G1066600.v1.1 MD16G1065700.v1.1
prunus_persica	Prupe.1G281400_v2.0.a1
pyrus_communis	pycom16g05730
rosa_chinensis	RchiOBHm_Chr4g0438951
rosa_laevigata	RLG00000006316
rosa_multiflora	Rmu_sc0005887.1_g000005 Rmu_sc0023005.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379960
rosa_rugosa	Rorug04G0314500 Rorug04G0314500
rosa_samantha	Rh4AG365200 Rh4BG376400 Rh4CG390500 Rh4DG371100
rosa_wichuraiana	Rw0G007350 Rw0G016900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AccII	CGCG	1 cut(s)	366
AciI	CCGC	2 cut(s)	366, 515
AclWI	GGATC	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	2 cut(s)	497, 560
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	2 cut(s)	201, 528
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	2 cut(s)	13, 23
AluI	AGCT	2 cut(s)	13, 23
Alw26I	GTCTC	1 cut(s)	592
AlwI	GGATC	1 cut(s)	133
Ama87I	CYCGRG	2 cut(s)	414, 501
AoxI	GGCC	1 cut(s)	59
AseI	ATTAAT	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	360
AspLEI	GCGC	2 cut(s)	53, 150
AsuC2I	CCSGG	2 cut(s)	135, 437
AvaI	CYCGRG	2 cut(s)	414, 501
BanII	GRGCYC	1 cut(s)	437
BccI	CCATC	3 cut(s)	197, 346, 597
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BcnI	CCSGG	2 cut(s)	135, 437
BcoDI	GTCTC	1 cut(s)	592
BfaI	CTAG	1 cut(s)	239
BfoI	RGCGCY	1 cut(s)	54
BglII	AGATCT	1 cut(s)	568
Bme1390I	CCNGG	2 cut(s)	135, 437
BmeT110I	CYCGRG	2 cut(s)	414, 501
BmrFI	CCNGG	2 cut(s)	135, 437
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	520
BmuI	ACTGGG	1 cut(s)	73
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	2 cut(s)	135, 437
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	79, 378
Bse8I	GATNNNNATC	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	500
BseGI	GGATG	5 cut(s)	10, 223, 445, 445, 511
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	320, 462
BseNI	ACTGG	2 cut(s)	79, 378
BseYI	CCCAGC	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	61
BsiHKCI	CYCGRG	2 cut(s)	414, 501
BsiSI	CCGG	2 cut(s)	135, 437
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	592
BsmBI	CGTCTC	1 cut(s)	592
BsnI	GGCC	1 cut(s)	61
BsoBI	CYCGRG	2 cut(s)	414, 501
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	2 cut(s)	125, 568
BspACI	CCGC	2 cut(s)	366, 515
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	2 cut(s)	319, 463
BspFNI	CGCG	1 cut(s)	366
BspPI	GGATC	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	79, 378
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	2 cut(s)	125, 568
Bst4CI	ACNGT	2 cut(s)	116, 245
Bst6I	CTCTTC	1 cut(s)	580
BstC8I	GCNNGC	2 cut(s)	21, 519
BstDEI	CTNAG	2 cut(s)	306, 471
BstF5I	GGATG	5 cut(s)	10, 223, 445, 445, 511
BstFNI	CGCG	1 cut(s)	366
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 150
BstKTI	GATC	2 cut(s)	128, 571
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	2 cut(s)	125, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	2 cut(s)	133, 435
BstUI	CGCG	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	5 cut(s)	10, 223, 445, 445, 511
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	2 cut(s)	21, 519
CfoI	GCGC	2 cut(s)	53, 150
Csp6I	GTAC	2 cut(s)	496, 559
CviAII	CATG	3 cut(s)	338, 410, 518
CviJI	RGCY	7 cut(s)	13, 23, 44, 61, 291, 435, 475
CviKI_1	RGCY	7 cut(s)	13, 23, 44, 61, 291, 435, 475
CviQI	GTAC	2 cut(s)	496, 559
DdeI	CTNAG	2 cut(s)	306, 471
DpnI	GATC	2 cut(s)	127, 570
DpnII	GATC	2 cut(s)	125, 568
Eam1104I	CTCTTC	1 cut(s)	580
EarI	CTCTTC	1 cut(s)	580
Eco147I	AGGCCT	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	24
Eco88I	CYCGRG	2 cut(s)	414, 501
EcoT38I	GRGCYC	1 cut(s)	437
Esp3I	CGTCTC	1 cut(s)	592
FaeI	CATG	3 cut(s)	341, 413, 521
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FatI	CATG	3 cut(s)	337, 409, 517
FauI	CCCGC	1 cut(s)	359
FauNDI	CATATG	1 cut(s)	331
FokI	GGATG	5 cut(s)	17, 230, 432, 452, 498
FriOI	GRGCYC	1 cut(s)	437
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	2 cut(s)	52, 149
GsaI	CCCAGC	1 cut(s)	461
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	2 cut(s)	135, 437
HhaI	GCGC	2 cut(s)	53, 150
Hin1II	CATG	3 cut(s)	341, 413, 521
Hin6I	GCGC	2 cut(s)	51, 148
HinP1I	GCGC	2 cut(s)	51, 148
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	3 cut(s)	262, 304, 524
HpaII	CCGG	2 cut(s)	135, 437
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	125
Hpy188III	TCNNGA	2 cut(s)	232, 349
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	4 cut(s)	72, 350, 355, 460
HpyCH4III	ACNGT	2 cut(s)	116, 245
HpyCH4V	TGCA	5 cut(s)	19, 179, 323, 493, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	306, 471
Hsp92II	CATG	3 cut(s)	341, 413, 521
HspAI	GCGC	2 cut(s)	51, 148
Kzo9I	GATC	2 cut(s)	125, 568
LmnI	GCTCC	1 cut(s)	28
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	2 cut(s)	127, 570
MboI	GATC	2 cut(s)	125, 568
MboII	GAAGA	5 cut(s)	150, 159, 217, 445, 567
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	2 cut(s)	27, 528
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	5 cut(s)	64, 165, 265, 495, 510
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	1 cut(s)	516
MspI	CCGG	2 cut(s)	135, 437
MspR9I	CCNGG	2 cut(s)	135, 437
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	50
NciI	CCSGG	2 cut(s)	135, 437
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	2 cut(s)	125, 568
NlaIII	CATG	3 cut(s)	341, 413, 521
NmuCI	GTSAC	1 cut(s)	369
NspI	RCATGY	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	521
PceI	AGGCCT	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	262, 524
PfoI	TCCNGGA	1 cut(s)	133
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PshBI	ATTAAT	1 cut(s)	531
PsiI	TTATAA	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	2 cut(s)	497, 560
RsaNI	GTAC	2 cut(s)	496, 559
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	1 cut(s)	531
Sau3AI	GATC	2 cut(s)	125, 568
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	135, 437
SduI	GDGCHC	1 cut(s)	437
SetI	ASST	6 cut(s)	15, 25, 197, 347, 472, 549
SfaNI	GCATC	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
SphI	GCATGC	1 cut(s)	521
Sse9I	AATT	2 cut(s)	27, 528
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	2 cut(s)	366, 515
SspI	AATATT	1 cut(s)	285
SspMI	CTAG	1 cut(s)	239
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	2 cut(s)	133, 435
TaaI	ACNGT	2 cut(s)	116, 245
TaqI	TCGA	2 cut(s)	265, 350
TasI	AATT	2 cut(s)	27, 528
TatI	WGTACW	1 cut(s)	558
TfiI	GAWTC	2 cut(s)	262, 524
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	369
Tsp45I	GTSAC	1 cut(s)	369
TspDTI	ATGAA	1 cut(s)	456
TspRI	CASTG	1 cut(s)	378
VspI	ATTAAT	1 cut(s)	531
XceI	RCATGY	1 cut(s)	521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.