Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011776

Physical Location & Seq

Genomic Coordinates Forward (+)

30117643 .. 30120164

Gene Structure 2522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGACGCCACCAAGATGTTACAACCTTCAGTCTCCAACATTTCAGCCTACACTACCCTAAAGTCCTCCTTATCAAGACCCCTTTCGCATTTGGTCTGCAAGACCATTTTTGCAACCTCCTGCCATAGCTTTGTATCCAATCGAGGAAGAAAATGGACCCTGCAAGCTTCTACATCTCCATCATACTTCAGGAGATATTCAGAGAAGAAGAGAGTAGACGAAAGCGAGAGCTTGACTCTCGACAGCATAAGGCAATCTTTGATTCGCCAGGAAGACGACATTATATTTTGTTTTTTGGAGAGGGCACAGTATGCTCACAACCCCAATACTTATGACCCTAATGCTTTCTCTATGGAAGGATTTCATGGTTCGCTGGTGGAGTTCATGCTCATGGAAACTGAAAAGCTCCATGCTCAGGTTGGCAGATACAAGAGTCCTGATGAGCATCCATTCTTCCCAGAACACTTGCCTGAGCCATTGCTTCCACCTCTGCAGTACCCACAGGTTCTACATTCTTGTGCTGATTCGATTAATATAAACCACCAAGTTTGGGATATGTATTTTGGAAATATTCTTCCCAGCCTAGTCGAACAAGGAGATGATGGTAATTGTGGATCAGCTGCTGTTTGTGACACCCTTTGCTTGCAGGCACTCTCGAAGAGAATCCACTATGGTAAATTTGTCGCAGAGGCAAAATTCCAAGAATCCTTTGCAGCCTATGAGCCTGCGATTAAAGCAAAAGACAGGGCTAAATTGATGGAGTTGCTGACATTTAAGAAAGTGGAAGAAGGTGTCAAGAAGAGAGTAGAGATCAAGACAAGAACACTTGGCCAGGAAATCAAAATCCACCATGAGGAAGACGATGCTACTCCTGTGTACAAGATCAAGCCAAATCTTGTTGCAGATGTGTATGGGGATTGGATCATGCCTCTCACCAAAGAAGTTGAAGTACAATACCTGTTGAGAAGACTTGAAGATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

37.43

Weight (kDa)

6.19

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	208 - 316	1e-07	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0011776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69370
fragaria_vesca	FvH4_4g30560
malus_domestica	MD13G1066600.v1.1 MD16G1065700.v1.1
prunus_persica	Prupe.1G281400_v2.0.a1
pyrus_communis	pycom16g05730
rosa_chinensis	RchiOBHm_Chr4g0438951
rosa_laevigata	RLG00000006316
rosa_multiflora	Rmu_sc0005887.1_g000005 Rmu_sc0023005.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379960
rosa_rugosa	Rorug04G0314500 Rorug04G0314500
rosa_samantha	Rh4AG365200 Rh4BG376400 Rh4CG390500 Rh4DG371100
rosa_wichuraiana	Rw0G007350 Rw0G016900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	216
AclWI	GGATC	2 cut(s)	622, 929
AcoI	YGGCCR	1 cut(s)	829
AcsI	RAATTY	2 cut(s)	677, 695
AcuI	CTGAAG	2 cut(s)	12, 172
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	3 cut(s)	497, 878, 951
AfiI	CCNNNNNNNGG	3 cut(s)	415, 550, 853
AgsI	TTSAA	2 cut(s)	947, 974
AjnI	CCWGG	2 cut(s)	267, 831
AluBI	AGCT	5 cut(s)	129, 167, 231, 406, 620
AluI	AGCT	5 cut(s)	129, 167, 231, 406, 620
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	622, 929
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	829
ApeKI	GCWGC	2 cut(s)	620, 713
ApoI	RAATTY	2 cut(s)	677, 695
AseI	ATTAAT	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	925
AvaII	GGWCC	1 cut(s)	156
BaeGI	GKGCMC	1 cut(s)	307
BaeI	ACNNNNGTAYC	2 cut(s)	418, 451
BalI	TGGCCA	1 cut(s)	831
BarI	GAAGNNNNNNTAC	2 cut(s)	933, 965
BbsI	GAAGAC	3 cut(s)	279, 864, 973
BbvI	GCAGC	2 cut(s)	607, 725
BccI	CCATC	3 cut(s)	187, 596, 751
BciT130I	CCWGG	2 cut(s)	269, 833
BciVI	GTATCC	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	584
BfmI	CTRYAG	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	145
BisI	GCNGC	2 cut(s)	621, 714
BlsI	GCNGC	2 cut(s)	622, 715
Bme1390I	CCNGG	2 cut(s)	269, 833
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	2 cut(s)	269, 833
BmsI	GCATC	2 cut(s)	454, 853
BpiI	GAAGAC	3 cut(s)	279, 864, 973
BplI	GAGNNNNNCTC	2 cut(s)	220, 252
Bpu10I	CCTNAGC	2 cut(s)	414, 471
BsaBI	GATNNNNATC	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 550, 853
Bse3DI	GCAATG	1 cut(s)	476
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	269, 833
BseGI	GGATG	1 cut(s)	445
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	415, 550, 853
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	2 cut(s)	428, 462
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	607, 725
BseYI	CCCAGC	1 cut(s)	578
BshFI	GGCC	1 cut(s)	831
BslI	CCNNNNNNNGG	3 cut(s)	415, 550, 853
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	831
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp1407I	TGTACA	1 cut(s)	876
Bsp143I	GATC	4 cut(s)	614, 810, 882, 921
BspANI	GGCC	1 cut(s)	831
BspCNI	CTCAG	2 cut(s)	427, 463
BspLI	GGNNCC	1 cut(s)	158
BspMAI	CTGCAG	1 cut(s)	495
BspPI	GGATC	2 cut(s)	622, 929
BsrDI	GCAATG	1 cut(s)	476
BsrGI	TGTACA	1 cut(s)	876
BssMI	GATC	4 cut(s)	614, 810, 882, 921
BssNI	GRCGYC	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	269, 833
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	3 cut(s)	203, 653, 794
BstACI	GRCGYC	1 cut(s)	6
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstAUI	TGTACA	1 cut(s)	876
BstC8I	GCNNGC	4 cut(s)	165, 644, 648, 726
BstDEI	CTNAG	2 cut(s)	414, 471
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	4 cut(s)	617, 813, 885, 924
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	4 cut(s)	614, 810, 882, 921
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 734
BstNI	CCWGG	2 cut(s)	269, 833
BstSCI	CCNGG	2 cut(s)	267, 831
BstSFI	CTRYAG	1 cut(s)	491
BstSLI	GKGCMC	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	607, 725
BstV2I	GAAGAC	3 cut(s)	279, 864, 973
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	831
BtsCI	GGATG	1 cut(s)	445
Cac8I	GCNNGC	4 cut(s)	165, 644, 648, 726
CaiI	CAGNNNCTG	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	156
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	3 cut(s)	496, 877, 950
CspCI	CAANNNNNGTGG	2 cut(s)	530, 565
CviAII	CATG	6 cut(s)	365, 385, 391, 410, 851, 925
CviQI	GTAC	3 cut(s)	496, 877, 950
DdeI	CTNAG	2 cut(s)	414, 471
DpnI	GATC	4 cut(s)	616, 812, 884, 923
DpnII	GATC	4 cut(s)	614, 810, 882, 921
EaeI	YGGCCR	1 cut(s)	829
Eam1104I	CTCTTC	3 cut(s)	203, 653, 794
EarI	CTCTTC	3 cut(s)	203, 653, 794
Eco47I	GGWCC	1 cut(s)	156
Eco57I	CTGAAG	2 cut(s)	12, 172
EcoRII	CCWGG	2 cut(s)	267, 831
FaeI	CATG	6 cut(s)	368, 388, 394, 413, 854, 928
FalI	AAGNNNNNCTT	4 cut(s)	53, 85, 241, 273
FatI	CATG	6 cut(s)	364, 384, 390, 409, 850, 924
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	621, 714
FokI	GGATG	1 cut(s)	432
Fsp4HI	GCNGC	2 cut(s)	621, 714
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	2 cut(s)	621, 714
GsaI	CCCAGC	1 cut(s)	582
HaeIII	GGCC	1 cut(s)	831
HgaI	GACGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	6 cut(s)	368, 388, 394, 413, 854, 928
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	6 cut(s)	235, 262, 433, 524, 663, 704
HphI	GGTGA	1 cut(s)	925
Hpy166II	GTNNAC	2 cut(s)	217, 877
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	7 cut(s)	75, 190, 239, 437, 655, 796, 814
Hpy8I	GTNNAC	2 cut(s)	217, 877
HpyAV	CCTTC	3 cut(s)	36, 350, 782
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4V	TGCA	7 cut(s)	99, 113, 163, 493, 646, 713, 902
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 734
HpyF3I	CTNAG	2 cut(s)	414, 471
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	6 cut(s)	368, 388, 394, 413, 854, 928
Kzo9I	GATC	4 cut(s)	614, 810, 882, 921
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	2 cut(s)	607, 725
LweI	GCATC	2 cut(s)	454, 853
MaeI	CTAG	1 cut(s)	584
MaeIII	GTNAC	2 cut(s)	18, 629
MalI	GATC	4 cut(s)	616, 812, 884, 923
MboI	GATC	4 cut(s)	614, 810, 882, 921
MhlI	GDGCHC	1 cut(s)	307
MlsI	TGGCCA	1 cut(s)	831
MluCI	AATT	4 cut(s)	607, 677, 695, 752
MluNI	TGGCCA	1 cut(s)	831
MlyI	GAGTC	2 cut(s)	229, 442
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	8 cut(s)	76, 127, 137, 294, 498, 682, 847, 939
Mox20I	TGGCCA	1 cut(s)	831
MroXI	GAANNNNTTC	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	831
MseI	TTAA	3 cut(s)	531, 732, 774
MslI	CAYNNNNRTG	3 cut(s)	14, 389, 516
Msp20I	TGGCCA	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	620
MspR9I	CCNGG	2 cut(s)	269, 833
MvaI	CCWGG	2 cut(s)	269, 833
MwoI	GCNNNNNNNGC	2 cut(s)	311, 734
NdeII	GATC	4 cut(s)	614, 810, 882, 921
NlaIII	CATG	6 cut(s)	368, 388, 394, 413, 854, 928
NlaIV	GGNNCC	1 cut(s)	158
NmuCI	GTSAC	1 cut(s)	629
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	4 cut(s)	262, 524, 663, 704
PkrI	GCNGC	2 cut(s)	622, 715
PleI	GAGTC	2 cut(s)	229, 441
PpsI	GAGTC	2 cut(s)	229, 441
PshBI	ATTAAT	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	267, 831
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	2 cut(s)	267, 831
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	156
PstI	CTGCAG	1 cut(s)	495
PstNI	CAGNNNCTG	1 cut(s)	623
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	3 cut(s)	497, 878, 951
RsaNI	GTAC	3 cut(s)	496, 877, 950
RseI	CAYNNNNRTG	3 cut(s)	14, 389, 516
SaqAI	TTAA	3 cut(s)	531, 732, 774
SatI	GCNGC	2 cut(s)	621, 714
Sau3AI	GATC	4 cut(s)	614, 810, 882, 921
Sau96I	GGNCC	1 cut(s)	156
SchI	GAGTC	2 cut(s)	229, 442
ScrFI	CCNGG	2 cut(s)	269, 833
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	2 cut(s)	454, 853
SfcI	CTRYAG	1 cut(s)	491
SinI	GGWCC	1 cut(s)	156
SmiMI	CAYNNNNRTG	3 cut(s)	14, 389, 516
Sse9I	AATT	4 cut(s)	607, 677, 695, 752
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	1 cut(s)	584
StyD4I	CCNGG	2 cut(s)	267, 831
TaaI	ACNGT	1 cut(s)	309
TaqI	TCGA	5 cut(s)	142, 240, 527, 588, 656
TasI	AATT	4 cut(s)	607, 677, 695, 752
TatI	WGTACW	2 cut(s)	876, 949
TfiI	GAWTC	4 cut(s)	262, 524, 663, 704
Tru1I	TTAA	3 cut(s)	531, 732, 774
Tru9I	TTAA	3 cut(s)	531, 732, 774
TseFI	GTSAC	1 cut(s)	629
TseI	GCWGC	2 cut(s)	620, 713
Tsp45I	GTSAC	1 cut(s)	629
TspDTI	ATGAA	2 cut(s)	353, 373
VpaK11BI	GGWCC	1 cut(s)	156
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	2 cut(s)	677, 695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.