Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011776

Physical Location & Seq

Genomic Coordinates Forward (+)

4611258 .. 4614122

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1066600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGTGCCAAGCTCTTGCAAGCTTCAGTTCCCAACGCTTCAGCCCACAACGCCTCAAGGCCTTCATTACCCACTCCCCATTTTGTCTCCCACACCATTTTCAACACACCCAACAATTTTTTCCGATCAAATCCCGGAAGAAAACTGCACTTTCCTCTCCAAGTTTCTTCTTCTTCTTGTGCAACCTCTCCCATCAAATATTCAAGTAAGAAAAGGGTGGATGAGAGCGAAATCTTAACTCTGGACAGTATAAGGCACTCTTTAATTCGACAAGAGGACAGCATAATATTTAGCCTTCTGGAGCGGGCTCAGTACTGTTATAATGCAGACACGTATGACCATGACACCTTCTCGATGGAAGGATTTCGTGGTTCACTGGTTGAGTTTATGGTCAGGGAAACTGAAAAACTCCATGCCCAGGCGGGGAGGTACAAGAGCCCTGATGAACATCCTTTCTTCCCAGCACACTTACCTGAGCCAATGCTTCCTCCTTTGCAGTATCCACAGGTTTTGCATCCGTATGCCGATTCAATTAATATAAACAGTAAGGTTTGGAACATGTACTTTAGAGATCTCCTTCCCAGATTAGTCAAAGCAGGAGACAATGGTAATTGTGGATCAGATGCTGTTTGTGACACACTTTGTTTGCAGGCGCTTTCGAAGAGAATCCACTATGGGAAATTCGTGGCAGAGGCAAAATTCCGTCAATCCCCAGCGGAATATGAGGCTGCCATTAGAGCACAAGACAGGAATCAACTGATGGTGTTGCTGACATTCGAAACAGTGGAAGCAGCGATCAAGAGGAGAGTGGAGATGAAGACGAAACGATACGGGCAGGAGGTTAAAATCGACGAAGGGGAAGATGATGCAGCTAACCCTGTATACCAAATCAAGCCACATTTAGTTGCCAGTCTCTATGGAGATTGGATCATACCTCTCACGAAGCAAGTTGAGATTGAATACCTCTTGAGAAGATTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

37.27

Weight (kDa)

7.2

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	211 - 318	2.6e-07	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69370
fragaria_vesca	FvH4_4g30560
malus_domestica	MD13G1066600.v1.1 MD16G1065700.v1.1
prunus_persica	Prupe.1G281400_v2.0.a1
pyrus_communis	pycom16g05730
rosa_chinensis	RchiOBHm_Chr4g0438951
rosa_laevigata	RLG00000006316
rosa_multiflora	Rmu_sc0005887.1_g000005 Rmu_sc0023005.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379960
rosa_rugosa	Rorug04G0314500 Rorug04G0314500
rosa_samantha	Rh4AG365200 Rh4BG376400 Rh4CG390500 Rh4DG371100
rosa_wichuraiana	Rw0G007350 Rw0G016900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	5
AccBSI	CCGCTC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	882
AciI	CCGC	3 cut(s)	304, 422, 716
AclWI	GGATC	2 cut(s)	625, 935
AcsI	RAATTY	2 cut(s)	680, 698
AcuI	CTGAAG	2 cut(s)	9, 24
AfaI	GTAC	3 cut(s)	314, 431, 563
AfiI	CCNNNNNNNGG	2 cut(s)	418, 423
AflIII	ACRYGT	2 cut(s)	330, 558
AgsI	TTSAA	4 cut(s)	103, 204, 531, 959
AjnI	CCWGG	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	3 cut(s)	13, 23, 872
AluI	AGCT	3 cut(s)	13, 23, 872
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	3 cut(s)	91, 594, 917
AlwI	GGATC	2 cut(s)	625, 935
AlwNI	CAGNNNCTG	1 cut(s)	626
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	3 cut(s)	728, 791, 869
ApoI	RAATTY	2 cut(s)	680, 698
AseI	ATTAAT	1 cut(s)	534
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	655
AsuC2I	CCSGG	1 cut(s)	135
AsuII	TTCGAA	2 cut(s)	659, 777
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	310, 440
BbsI	GAAGAC	1 cut(s)	824
Bbv12I	GWGCWC	1 cut(s)	742
BbvI	GCAGC	3 cut(s)	715, 803, 881
BccI	CCATC	3 cut(s)	200, 349, 754
BciT130I	CCWGG	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	3 cut(s)	91, 594, 917
BfoI	RGCGCY	1 cut(s)	656
BfuI	GTATCC	1 cut(s)	510
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	3 cut(s)	729, 792, 870
BlsI	GCNGC	3 cut(s)	730, 793, 871
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	2 cut(s)	135, 419
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	135, 419
BmsI	GCATC	3 cut(s)	523, 613, 856
BpiI	GAAGAC	1 cut(s)	824
BpmI	CTGGAG	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	474
Bpu14I	TTCGAA	2 cut(s)	659, 777
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 423
Bse1I	ACTGG	2 cut(s)	381, 909
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	3 cut(s)	226, 448, 514
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	2 cut(s)	418, 423
BseMII	CTCAG	2 cut(s)	323, 465
BseNI	ACTGG	2 cut(s)	381, 909
BseRI	GAGGAG	1 cut(s)	817
BseXI	GCAGC	3 cut(s)	715, 803, 881
BseYI	CCCAGC	2 cut(s)	460, 712
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	742
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	418, 423
BsmAI	GTCTC	3 cut(s)	91, 594, 917
BsnI	GGCC	1 cut(s)	61
Bsp119I	TTCGAA	2 cut(s)	659, 777
Bsp1286I	GDGCHC	3 cut(s)	310, 440, 742
Bsp143I	GATC	5 cut(s)	125, 571, 617, 795, 927
BspACI	CCGC	3 cut(s)	304, 422, 716
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	2 cut(s)	322, 466
BspLI	GGNNCC	1 cut(s)	7
BspPI	GGATC	2 cut(s)	625, 935
BspT104I	TTCGAA	2 cut(s)	659, 777
BspT107I	GGYRCC	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	381, 909
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	5 cut(s)	125, 571, 617, 795, 927
BssNAI	GTATAC	1 cut(s)	883
Bst1107I	GTATAC	1 cut(s)	883
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	4 cut(s)	248, 317, 545, 784
Bst6I	CTCTTC	1 cut(s)	656
BstBAI	YACGTR	1 cut(s)	333
BstBI	TTCGAA	2 cut(s)	659, 777
BstC8I	GCNNGC	3 cut(s)	21, 306, 651
BstDEI	CTNAG	2 cut(s)	309, 474
BstF5I	GGATG	3 cut(s)	226, 448, 514
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	5 cut(s)	128, 574, 620, 798, 930
BstMAI	GTCTC	3 cut(s)	91, 594, 917
BstMBI	GATC	5 cut(s)	125, 571, 617, 795, 927
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 737
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	2 cut(s)	133, 417
BstV1I	GCAGC	3 cut(s)	715, 803, 881
BstV2I	GAAGAC	1 cut(s)	824
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BstZ17I	GTATAC	1 cut(s)	883
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	3 cut(s)	226, 448, 514
BtsIMutI	CAGTG	2 cut(s)	374, 789
Cac8I	GCNNGC	3 cut(s)	21, 306, 651
CaiI	CAGNNNCTG	1 cut(s)	626
CfoI	GCGC	1 cut(s)	655
Csp6I	GTAC	3 cut(s)	313, 430, 562
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	3 cut(s)	341, 413, 559
CviQI	GTAC	3 cut(s)	313, 430, 562
DdeI	CTNAG	2 cut(s)	309, 474
DpnI	GATC	5 cut(s)	127, 573, 619, 797, 929
DpnII	GATC	5 cut(s)	125, 571, 617, 795, 927
Eam1104I	CTCTTC	1 cut(s)	656
EarI	CTCTTC	1 cut(s)	656
Eco147I	AGGCCT	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	310, 440
Eco57I	CTGAAG	2 cut(s)	9, 24
EcoRII	CCWGG	1 cut(s)	417
EcoT38I	GRGCYC	2 cut(s)	310, 440
FaeI	CATG	3 cut(s)	344, 416, 562
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FatI	CATG	3 cut(s)	340, 412, 558
FauI	CCCGC	2 cut(s)	297, 415
FblI	GTMKAC	1 cut(s)	882
Fnu4HI	GCNGC	3 cut(s)	729, 792, 870
FokI	GGATG	3 cut(s)	233, 435, 501
FriOI	GRGCYC	2 cut(s)	310, 440
Fsp4HI	GCNGC	3 cut(s)	729, 792, 870
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	3 cut(s)	729, 792, 870
GsaI	CCCAGC	2 cut(s)	464, 716
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	135
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	3 cut(s)	344, 416, 562
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	3 cut(s)	527, 666, 751
HpaII	CCGG	1 cut(s)	135
Hpy166II	GTNNAC	2 cut(s)	374, 883
Hpy188I	TCNGA	2 cut(s)	125, 622
Hpy188III	TCNNGA	6 cut(s)	242, 299, 352, 799, 940, 967
Hpy8I	GTNNAC	2 cut(s)	374, 883
Hpy99I	CGWCG	1 cut(s)	854
HpyAV	CCTTC	6 cut(s)	72, 305, 353, 358, 587, 848
HpyCH4III	ACNGT	4 cut(s)	248, 317, 545, 784
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	8 cut(s)	19, 148, 182, 326, 496, 514, 649, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 737
HpyF3I	CTNAG	2 cut(s)	309, 474
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	3 cut(s)	344, 416, 562
HspAI	GCGC	1 cut(s)	653
Kzo9I	GATC	5 cut(s)	125, 571, 617, 795, 927
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	3 cut(s)	715, 803, 881
LweI	GCATC	3 cut(s)	523, 613, 856
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	5 cut(s)	127, 573, 619, 797, 929
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	5 cut(s)	125, 571, 617, 795, 927
MboII	GAAGA	9 cut(s)	150, 159, 162, 165, 448, 673, 829, 872, 984
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	3 cut(s)	310, 440, 742
MluCI	AATT	6 cut(s)	115, 264, 531, 610, 680, 698
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	5 cut(s)	236, 263, 534, 843, 982
MslI	CAYNNNNRTG	1 cut(s)	519
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	135, 419
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	2 cut(s)	50, 737
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	5 cut(s)	125, 571, 617, 795, 927
NlaIII	CATG	3 cut(s)	344, 416, 562
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	632
NspI	RCATGY	1 cut(s)	562
NspV	TTCGAA	2 cut(s)	659, 777
PceI	AGGCCT	1 cut(s)	61
PciI	ACATGT	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	3 cut(s)	527, 666, 751
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	730, 793, 871
Ppu21I	YACGTR	1 cut(s)	333
PscI	ACATGT	1 cut(s)	558
PshBI	ATTAAT	1 cut(s)	534
PsiI	TTATAA	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	417
PspFI	CCCAGC	2 cut(s)	460, 712
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	3 cut(s)	314, 431, 563
RsaNI	GTAC	3 cut(s)	313, 430, 562
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	5 cut(s)	236, 263, 534, 843, 982
SatI	GCNGC	3 cut(s)	729, 792, 870
Sau3AI	GATC	5 cut(s)	125, 571, 617, 795, 927
ScaI	AGTACT	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	135, 419
SduI	GDGCHC	3 cut(s)	310, 440, 742
SfaNI	GCATC	3 cut(s)	523, 613, 856
SfuI	TTCGAA	2 cut(s)	659, 777
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	2 cut(s)	55, 967
SmoI	CTYRAG	2 cut(s)	55, 967
Sse9I	AATT	6 cut(s)	115, 264, 531, 610, 680, 698
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	3 cut(s)	304, 422, 716
SspI	AATATT	2 cut(s)	200, 288
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	2 cut(s)	133, 417
TaaI	ACNGT	4 cut(s)	248, 317, 545, 784
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	5 cut(s)	268, 353, 659, 777, 849
TasI	AATT	6 cut(s)	115, 264, 531, 610, 680, 698
TatI	WGTACW	2 cut(s)	312, 561
TfiI	GAWTC	3 cut(s)	527, 666, 751
Tru1I	TTAA	5 cut(s)	236, 263, 534, 843, 982
Tru9I	TTAA	5 cut(s)	236, 263, 534, 843, 982
TscAI	CASTG	2 cut(s)	381, 789
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	3 cut(s)	728, 791, 869
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	3 cut(s)	54, 459, 830
TspGWI	ACGGA	2 cut(s)	507, 692
TspRI	CASTG	2 cut(s)	381, 789
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	2 cut(s)	680, 698
XceI	RCATGY	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	882
XmnI	GAANNNNTTC	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.