Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011776

Physical Location & Seq

Genomic Coordinates Forward (+)

67330971 .. 67333679

Gene Structure 2709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG365200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTTTTTATATAGATATTCAGGGAAGAAAAGGGTAGATGCGAGTGAAAGCTTGACTCTAGACAGTATTAGACACTCTTTGATTCGACAAGAGGATGACATAATATTTAGCCTTTTGGAGAGGGCACAGTATTGTTACAATACTGACACTTACGACCGTGATGCCTTCTCAATGGAAGGATTTCATGGTTCGCTGGTGGAATTCATGCTCAGGGAAACTGAAAAGCTCCATGCGCAGGTTGGCAGATACAAGAGCCCAGATGAGCATCCTTTCTTCCCGGCACATTTACCAGAGCCAATGCTTCCTCCTTTGCAATATCCACAGGTTCTACATCCTTGTGCTGGTTCGATTAATATAAACAACAAAGTTTGGAACATGTATTTTAGAGATCTTCTTCCCAGATTAGTCAAACAAGGAGATGATGGTAATTGTGGATCAGCTGCTGTTTTTGACACCCTTTGCTTGCAGGCACTCTCGAAGAGAATCCACTATGGTAAATTTGTTGCAGAGGCAAAATTCCGACAATCCCCTGCAGACTATGAGCCTGCCATTAGAGCACAAGACAGGATGCAATTGATGAGCTTGCTGACATTTGAAACAGTGGAAGCAGCTATCAAGAAGAGAGTAGAGATGAAAACTAAAACACTTGGCCAGGAGGTCAAAATCAACCAAGACGAAGACGATGCTAATCCTGTATATAAGATCAAGCCAAATCTAGTTGCCGCTCTGTATGGGGATTGGATCATGCCTCTCACAAAGGAAGTTCAGGTTGAATACTTATTGAGAAGACTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

30.66

Weight (kDa)

6.19

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	149 - 256	4.2e-08	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69370
fragaria_vesca	FvH4_4g30560
malus_domestica	MD13G1066600.v1.1 MD16G1065700.v1.1
prunus_persica	Prupe.1G281400_v2.0.a1
pyrus_communis	pycom16g05730
rosa_chinensis	RchiOBHm_Chr4g0438951
rosa_laevigata	RLG00000006316
rosa_multiflora	Rmu_sc0005887.1_g000005 Rmu_sc0023005.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379960
rosa_rugosa	Rorug04G0314500 Rorug04G0314500
rosa_samantha	Rh4AG365200 Rh4BG376400 Rh4CG390500 Rh4DG371100
rosa_wichuraiana	Rw0G007350 Rw0G016900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	234
Acc36I	ACCTGC	1 cut(s)	226
AccBSI	CCGCTC	1 cut(s)	725
AciI	CCGC	1 cut(s)	723
AclWI	GGATC	2 cut(s)	442, 749
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	3 cut(s)	200, 497, 515
AfiI	CCNNNNNNNGG	2 cut(s)	235, 341
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	596, 773
AjnI	CCWGG	1 cut(s)	651
AluBI	AGCT	5 cut(s)	51, 226, 440, 582, 611
AluI	AGCT	5 cut(s)	51, 226, 440, 582, 611
Alw21I	GWGCWC	1 cut(s)	559
AlwI	GGATC	2 cut(s)	442, 749
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	649
ApeKI	GCWGC	2 cut(s)	440, 608
ApoI	RAATTY	3 cut(s)	200, 497, 515
AseI	ATTAAT	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	235
AsuC2I	CCSGG	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	651
BanII	GRGCYC	1 cut(s)	257
BbsI	GAAGAC	2 cut(s)	684, 793
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	2 cut(s)	427, 620
BccI	CCATC	1 cut(s)	416
BcgI	CGANNNNNNTGC	4 cut(s)	143, 177, 665, 699
BciT130I	CCWGG	1 cut(s)	653
BcnI	CCSGG	1 cut(s)	278
BfaI	CTAG	2 cut(s)	59, 716
BfmI	CTRYAG	1 cut(s)	531
BfuAI	ACCTGC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	3 cut(s)	441, 609, 723
BlsI	GCNGC	3 cut(s)	442, 610, 724
Bme1390I	CCNGG	2 cut(s)	278, 653
BmrFI	CCNGG	2 cut(s)	278, 653
BmsI	GCATC	5 cut(s)	28, 151, 274, 558, 673
BpiI	GAAGAC	2 cut(s)	684, 793
Bpu10I	CCTNAGC	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	278
BsaBI	GATNNNNATC	2 cut(s)	264, 687
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 341
Bse1I	ACTGG	1 cut(s)	795
Bse8I	GATNNNNATC	2 cut(s)	264, 687
BseBI	CCWGG	1 cut(s)	653
BseGI	GGATG	4 cut(s)	100, 265, 331, 573
BseJI	GATNNNNATC	2 cut(s)	264, 687
BseLI	CCNNNNNNNGG	2 cut(s)	235, 341
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	795
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	427, 620
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	651
BsiEI	CGRYCG	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	235, 341
BsnI	GGCC	1 cut(s)	651
Bsp1286I	GDGCHC	3 cut(s)	127, 257, 559
Bsp143I	GATC	4 cut(s)	388, 434, 702, 741
BspACI	CCGC	1 cut(s)	723
BspANI	GGCC	1 cut(s)	651
BspCNI	CTCAG	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	2 cut(s)	442, 749
BsrBI	CCGCTC	1 cut(s)	725
BsrI	ACTGG	1 cut(s)	795
BssMI	GATC	4 cut(s)	388, 434, 702, 741
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	4 cut(s)	65, 129, 158, 601
Bst6I	CTCTTC	2 cut(s)	473, 614
BstC8I	GCNNGC	4 cut(s)	464, 468, 546, 584
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	4 cut(s)	100, 265, 331, 573
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	4 cut(s)	391, 437, 705, 744
BstMBI	GATC	4 cut(s)	388, 434, 702, 741
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	232, 554
BstNI	CCWGG	1 cut(s)	653
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	276, 651
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	427, 620
BstV2I	GAAGAC	2 cut(s)	684, 793
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	651
BtsCI	GGATG	4 cut(s)	100, 265, 331, 573
BtsIMutI	CAGTG	1 cut(s)	606
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	4 cut(s)	464, 468, 546, 584
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	1 cut(s)	235
CviAII	CATG	5 cut(s)	185, 205, 230, 376, 745
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	4 cut(s)	390, 436, 704, 743
DpnII	GATC	4 cut(s)	388, 434, 702, 741
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	2 cut(s)	473, 614
EarI	CTCTTC	2 cut(s)	473, 614
Eco24I	GRGCYC	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	257
FaeI	CATG	5 cut(s)	188, 208, 233, 379, 748
FatI	CATG	5 cut(s)	184, 204, 229, 375, 744
Fnu4HI	GCNGC	3 cut(s)	441, 609, 723
FokI	GGATG	4 cut(s)	107, 252, 318, 580
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	441, 609, 723
FspBI	CTAG	2 cut(s)	59, 716
FspI	TGCGCA	1 cut(s)	234
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	3 cut(s)	441, 609, 723
HaeIII	GGCC	1 cut(s)	651
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	5 cut(s)	188, 208, 233, 379, 748
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	3 cut(s)	55, 82, 483
HpaII	CCGG	1 cut(s)	278
Hpy188I	TCNGA	1 cut(s)	521
Hpy188III	TCNNGA	3 cut(s)	59, 475, 616
HpyAV	CCTTC	2 cut(s)	170, 175
HpyCH4III	ACNGT	4 cut(s)	65, 129, 158, 601
HpyCH4V	TGCA	5 cut(s)	313, 466, 506, 533, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	232, 554
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	5 cut(s)	188, 208, 233, 379, 748
HspAI	GCGC	1 cut(s)	233
Kzo9I	GATC	4 cut(s)	388, 434, 702, 741
LmnI	GCTCC	1 cut(s)	231
Lsp1109I	GCAGC	2 cut(s)	427, 620
LweI	GCATC	5 cut(s)	28, 151, 274, 558, 673
MaeI	CTAG	2 cut(s)	59, 716
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	4 cut(s)	390, 436, 704, 743
MbiI	CCGCTC	1 cut(s)	725
MboI	GATC	4 cut(s)	388, 434, 702, 741
MboII	GAAGA	8 cut(s)	37, 265, 383, 386, 490, 631, 689, 798
MfeI	CAATTG	1 cut(s)	572
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	3 cut(s)	127, 257, 559
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	5 cut(s)	200, 427, 497, 515, 572
MluNI	TGGCCA	1 cut(s)	651
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	6 cut(s)	85, 114, 315, 502, 649, 759
Mox20I	TGGCCA	1 cut(s)	651
MroXI	GAANNNNTTC	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	278, 653
MunI	CAATTG	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	653
MwoI	GCNNNNNNNGC	2 cut(s)	232, 554
NciI	CCSGG	1 cut(s)	278
NdeII	GATC	4 cut(s)	388, 434, 702, 741
NlaIII	CATG	5 cut(s)	188, 208, 233, 379, 748
NsbI	TGCGCA	1 cut(s)	234
NspI	RCATGY	1 cut(s)	379
PciI	ACATGT	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	82, 483
PkrI	GCNGC	3 cut(s)	442, 610, 724
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PscI	ACATGT	1 cut(s)	375
PshBI	ATTAAT	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PstI	CTGCAG	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	3 cut(s)	441, 609, 723
Sau3AI	GATC	4 cut(s)	388, 434, 702, 741
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	278, 653
SduI	GDGCHC	3 cut(s)	127, 257, 559
SetI	ASST	9 cut(s)	53, 228, 240, 327, 442, 584, 613, 660, 771
SfaNI	GCATC	5 cut(s)	28, 151, 274, 558, 673
SfcI	CTRYAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	5 cut(s)	200, 427, 497, 515, 572
SsiI	CCGC	1 cut(s)	723
SspI	AATATT	1 cut(s)	105
SspMI	CTAG	2 cut(s)	59, 716
StyD4I	CCNGG	2 cut(s)	276, 651
TaaI	ACNGT	4 cut(s)	65, 129, 158, 601
TaqI	TCGA	3 cut(s)	85, 347, 476
TasI	AATT	5 cut(s)	200, 427, 497, 515, 572
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	2 cut(s)	82, 483
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	606
TseI	GCWGC	2 cut(s)	440, 608
TspDTI	ATGAA	3 cut(s)	173, 193, 647
TspRI	CASTG	1 cut(s)	606
VspI	ATTAAT	1 cut(s)	351
XapI	RAATTY	3 cut(s)	200, 497, 515
XbaI	TCTAGA	1 cut(s)	58
XceI	RCATGY	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	2 cut(s)	59, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.