Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011776

Physical Location & Seq

Genomic Coordinates Reverse (-)

28448435 .. 28451516

Gene Structure 3082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G281400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGATGCCCACCTGCTAAAAGCTTCAATGCTTAGCCCTTCAGGCCCCAACACCTCAAGATCTTCAAGACCCACTCCCCATTTGGTCTCCCACACCATTTTTAAGACCACCAACAATGTCTTTCGATCCAACCCCGGGAGAAAACTGTACCATCTTCTCCGAGTTTCTTCTTCTCCAACCTCTCCCATCAGATATTCAAGGAAGAAAAGGGTGGATGAGAGTGAAAGTTTAACTCTAGACAATATAAGACACTCTTTAATTCGACAAGAGGAGAGCATAATATTTAGCCTTTTGGAGAGGGCTCAGTATTGTTATAATGCAGACACATATGACCATGATGCCATCTCGGCAGAAGGATTTCGTGGGTCGCTCGTTGAGTTTATGATCTGGGAAACTGAAAAGCTCCATGCGCAGGTTGGCAGATACAAGAGCCCAGATGAGCATCCTTTCTTCCCAGCATATTTACCTGAGCCAATGCTTCCCCCTTTGCAGTACCCACAGGTTCTGCATCCTTGTGCCGCTTCAATTAATATAAACAATAAGCTTTGGAATATGTATTTTAGAAACCTTCTTCCCAGATTAGTCAAAGCTGGAGATGATGGTAATTGTGGATCAGCTGCTGTTTGTGACACACTTTGTTTGCAGGAACTGTCGAAAAGAATCCACTATGGTAAATTTGTTGCAGAGGCCAAATTTCTTCAATCCCCTGCTGAATATGAGACTGCCATTAGAGCACAAGATAGGACTCAATTGATGGCCTTGCTGACATTCGAAACAGTGGAAGAGGCGATCCAAAAGAGAGTAGAGATGAAGGCCAAAACTTATGCCCAAGAATTTAAAATCCACCAAGAGGAAGATGAAGCAAGTCCTGTATACAAAATCAAGCCACATTTAGTTGCTAGTCTGTATCGAGATTCGATCATGCCTCTGACAAAGGAAGTTCAGGTTGAATACCTATTGAGAAGATTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

325

Amino Acids

37.23

Weight (kDa)

8.17

Isoelectric Point (pI)

55.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69370
fragaria_vesca	FvH4_4g30560
malus_domestica	MD13G1066600.v1.1 MD16G1065700.v1.1
prunus_persica	Prupe.1G281400_v2.0.a1
pyrus_communis	pycom16g05730
rosa_chinensis	RchiOBHm_Chr4g0438951
rosa_laevigata	RLG00000006316
rosa_multiflora	Rmu_sc0005887.1_g000005 Rmu_sc0023005.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379960
rosa_rugosa	Rorug04G0314500 Rorug04G0314500
rosa_samantha	Rh4AG365200 Rh4BG376400 Rh4CG390500 Rh4DG371100
rosa_wichuraiana	Rw0G007350 Rw0G016900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AarI	CACCTGC	1 cut(s)	21
Acc16I	TGCGCA	1 cut(s)	411
Acc36I	ACCTGC	2 cut(s)	21, 403
AccI	GTMKAC	1 cut(s)	873
AciI	CCGC	1 cut(s)	519
AclWI	GGATC	3 cut(s)	120, 619, 784
AcsI	RAATTY	3 cut(s)	674, 692, 833
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	2 cut(s)	149, 494
AfiI	CCNNNNNNNGG	3 cut(s)	135, 412, 850
AgsI	TTSAA	6 cut(s)	27, 66, 198, 525, 701, 950
AluBI	AGCT	5 cut(s)	23, 403, 544, 590, 617
AluI	AGCT	5 cut(s)	23, 403, 544, 590, 617
Alw21I	GWGCWC	1 cut(s)	736
Alw26I	GTCTC	2 cut(s)	91, 713
AlwI	GGATC	3 cut(s)	120, 619, 784
AlwNI	CAGNNNCTG	3 cut(s)	505, 620, 649
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	4 cut(s)	43, 687, 756, 813
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	3 cut(s)	674, 692, 833
AseI	ATTAAT	1 cut(s)	528
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	2 cut(s)	135, 136
AsuII	TTCGAA	1 cut(s)	771
AvaI	CYCGRG	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	304, 434
Bbv12I	GWGCWC	1 cut(s)	736
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	5 cut(s)	159, 194, 350, 593, 748
BcnI	CCSGG	2 cut(s)	135, 136
BcoDI	GTCTC	2 cut(s)	91, 713
BfaI	CTAG	2 cut(s)	236, 900
BfuAI	ACCTGC	2 cut(s)	21, 403
BglI	GCCNNNNNGGC	2 cut(s)	42, 347
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	2 cut(s)	519, 618
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	2 cut(s)	520, 619
Bme1390I	CCNGG	2 cut(s)	135, 136
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	135, 136
BmsI	GCATC	3 cut(s)	328, 451, 517
BpmI	CTGGAG	1 cut(s)	612
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	2 cut(s)	135, 136
BsaBI	GATNNNNATC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	133, 134
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 412, 850
Bse8I	GATNNNNATC	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	133, 134
BseGI	GGATG	4 cut(s)	10, 220, 442, 508
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	3 cut(s)	135, 412, 850
BseMII	CTCAG	2 cut(s)	317, 459
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	1 cut(s)	604
BseYI	CCCAGC	1 cut(s)	454
BshFI	GGCC	4 cut(s)	45, 689, 758, 815
BsiHKAI	GWGCWC	1 cut(s)	736
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	3 cut(s)	135, 412, 850
BsmAI	GTCTC	2 cut(s)	91, 713
BsnI	GGCC	4 cut(s)	45, 689, 758, 815
Bso31I	GGTCTC	1 cut(s)	91
BsoBI	CYCGRG	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	771
Bsp1286I	GDGCHC	3 cut(s)	304, 434, 736
Bsp143I	GATC	6 cut(s)	59, 125, 384, 611, 789, 918
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	1 cut(s)	519
BspANI	GGCC	4 cut(s)	45, 689, 758, 815
BspCNI	CTCAG	2 cut(s)	316, 460
BspLI	GGNNCC	1 cut(s)	46
BspMI	ACCTGC	2 cut(s)	21, 403
BspPI	GGATC	3 cut(s)	120, 619, 784
BspT104I	TTCGAA	1 cut(s)	771
BspTNI	GGTCTC	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	133, 134
BssMI	GATC	6 cut(s)	59, 125, 384, 611, 789, 918
BssNAI	GTATAC	1 cut(s)	874
Bst1107I	GTATAC	1 cut(s)	874
Bst4CI	ACNGT	3 cut(s)	147, 651, 778
Bst6I	CTCTTC	1 cut(s)	777
BstBI	TTCGAA	1 cut(s)	771
BstDEI	CTNAG	3 cut(s)	32, 303, 468
BstF5I	GGATG	4 cut(s)	10, 220, 442, 508
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	6 cut(s)	62, 128, 387, 614, 792, 921
BstMAI	GTCTC	2 cut(s)	91, 713
BstMBI	GATC	6 cut(s)	59, 125, 384, 611, 789, 918
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 347, 409, 731
BstSCI	CCNGG	2 cut(s)	133, 134
BstV1I	GCAGC	1 cut(s)	604
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BstZ17I	GTATAC	1 cut(s)	874
BsuRI	GGCC	4 cut(s)	45, 689, 758, 815
BtsCI	GGATG	4 cut(s)	10, 220, 442, 508
BtsIMutI	CAGTG	1 cut(s)	783
BveI	ACCTGC	2 cut(s)	21, 403
CaiI	CAGNNNCTG	3 cut(s)	505, 620, 649
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	44
Cfr9I	CCCGGG	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	148, 493
CviAII	CATG	3 cut(s)	335, 407, 922
CviQI	GTAC	2 cut(s)	148, 493
DdeI	CTNAG	3 cut(s)	32, 303, 468
DpnI	GATC	6 cut(s)	61, 127, 386, 613, 791, 920
DpnII	GATC	6 cut(s)	59, 125, 384, 611, 789, 918
DraI	TTTAAA	1 cut(s)	838
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
Eco24I	GRGCYC	2 cut(s)	304, 434
Eco31I	GGTCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	44
EcoT38I	GRGCYC	2 cut(s)	304, 434
FaeI	CATG	3 cut(s)	338, 410, 925
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FatI	CATG	3 cut(s)	334, 406, 921
FauNDI	CATATG	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	2 cut(s)	519, 618
FokI	GGATG	4 cut(s)	17, 227, 429, 495
FriOI	GRGCYC	2 cut(s)	304, 434
Fsp4HI	GCNGC	2 cut(s)	519, 618
FspBI	CTAG	2 cut(s)	236, 900
FspI	TGCGCA	1 cut(s)	411
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	2 cut(s)	519, 618
GsaI	CCCAGC	1 cut(s)	458
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	4 cut(s)	45, 689, 758, 815
HapII	CCGG	1 cut(s)	135
HhaI	GCGC	1 cut(s)	412
Hin1II	CATG	3 cut(s)	338, 410, 925
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HindIII	AAGCTT	2 cut(s)	21, 542
HinfI	GANTC	3 cut(s)	660, 745, 914
HpaII	CCGG	1 cut(s)	135
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188I	TCNGA	3 cut(s)	161, 191, 930
Hpy188III	TCNNGA	4 cut(s)	57, 66, 236, 911
Hpy8I	GTNNAC	1 cut(s)	874
HpyAV	CCTTC	4 cut(s)	48, 347, 578, 805
HpyCH4III	ACNGT	3 cut(s)	147, 651, 778
HpyCH4V	TGCA	5 cut(s)	320, 490, 508, 643, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 347, 409, 731
HpyF3I	CTNAG	3 cut(s)	32, 303, 468
Hsp92II	CATG	3 cut(s)	338, 410, 925
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	6 cut(s)	59, 125, 384, 611, 789, 918
LmnI	GCTCC	1 cut(s)	408
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	3 cut(s)	328, 451, 517
MaeI	CTAG	2 cut(s)	236, 900
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	6 cut(s)	61, 127, 386, 613, 791, 920
MboI	GATC	6 cut(s)	59, 125, 384, 611, 789, 918
MfeI	CAATTG	1 cut(s)	749
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	3 cut(s)	304, 434, 736
MluCI	AATT	7 cut(s)	258, 525, 604, 674, 692, 749, 833
MlyI	GAGTC	1 cut(s)	739
MmeI	TCCRAC	2 cut(s)	153, 200
MnlI	CCTC	8 cut(s)	64, 190, 262, 291, 679, 778, 844, 936
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	6 cut(s)	102, 230, 257, 528, 837, 973
MslI	CAYNNNNRTG	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	135, 136
MunI	CAATTG	1 cut(s)	749
MwoI	GCNNNNNNNGC	4 cut(s)	42, 347, 409, 731
NciI	CCSGG	2 cut(s)	135, 136
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	6 cut(s)	59, 125, 384, 611, 789, 918
NlaIII	CATG	3 cut(s)	338, 410, 925
NlaIV	GGNNCC	1 cut(s)	46
NmeAIII	GCCGAG	1 cut(s)	326
NmuCI	GTSAC	1 cut(s)	626
NsbI	TGCGCA	1 cut(s)	411
NspV	TTCGAA	1 cut(s)	771
PaqCI	CACCTGC	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	660, 914
PkrI	GCNGC	2 cut(s)	520, 619
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
PshBI	ATTAAT	1 cut(s)	528
PsiI	TTATAA	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	44
PstNI	CAGNNNCTG	3 cut(s)	505, 620, 649
PsuI	RGATCY	1 cut(s)	59
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	2 cut(s)	149, 494
RsaNI	GTAC	2 cut(s)	148, 493
RseI	CAYNNNNRTG	1 cut(s)	513
SaqAI	TTAA	6 cut(s)	102, 230, 257, 528, 837, 973
SatI	GCNGC	2 cut(s)	519, 618
Sau3AI	GATC	6 cut(s)	59, 125, 384, 611, 789, 918
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	2 cut(s)	135, 136
SduI	GDGCHC	3 cut(s)	304, 434, 736
SfaNI	GCATC	3 cut(s)	328, 451, 517
SfuI	TTCGAA	1 cut(s)	771
SmaI	CCCGGG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	7 cut(s)	258, 525, 604, 674, 692, 749, 833
SsiI	CCGC	1 cut(s)	519
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	2 cut(s)	236, 900
StyD4I	CCNGG	2 cut(s)	133, 134
TaaI	ACNGT	3 cut(s)	147, 651, 778
TaqI	TCGA	6 cut(s)	124, 262, 653, 771, 910, 917
TasI	AATT	7 cut(s)	258, 525, 604, 674, 692, 749, 833
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	2 cut(s)	660, 914
Tru1I	TTAA	6 cut(s)	102, 230, 257, 528, 837, 973
Tru9I	TTAA	6 cut(s)	102, 230, 257, 528, 837, 973
TscAI	CASTG	1 cut(s)	783
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	1 cut(s)	617
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	2 cut(s)	824, 873
TspMI	CCCGGG	1 cut(s)	134
TspRI	CASTG	1 cut(s)	783
VspI	ATTAAT	1 cut(s)	528
XapI	RAATTY	3 cut(s)	674, 692, 833
XbaI	TCTAGA	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 413
XmaI	CCCGGG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	873
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	2 cut(s)	236, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.