AT1G69700

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010826
Physical Location & Seq
Forward (+)
26220190 .. 26221870
1681 bp
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UTR
Exon/CDS
Intron
AT1G69700.1

Sequence Viewer

Length: 555 bp
ATGCCTTCAAATTCAGGAGATGATAATGTTCTTCAAGTTCTCATAAAGAACTTTGATGTCCTTGCTCTCCCATTGGTTACACTCGTCTATCCTCTATATGCATCAGTGAAAGCAATAGAGACAAGATCATTACCAGAAGATGAACAATGGCTTACTTACTGGGTTCTTTACGCACTTATCTCTCTCTTTGAACTCACTTTCTCCAAACCTCTCGAGTGGTTTCCTATATGGCCATACATGAAGTTGTTTGGGATCTGTTGGTTAGTGTTACCACAATTCAATGGAGCAGAACATATCTACAAACATTTCATTAGACCATTCTACAGAGATCCTCAAAGAGCTACCACCAAAATTTGGTATGTTCCTCACAAGAAATTCAATTTCTTCCCTAAACGCGACGACGACGACATTCTCACTGCTGCTGAAAAATACATGGAACAACACGGTACCGAAGCGTTTGAGCGAATGATCGTTAAGAAGGATAGTTATGAAAGAGGTAGGAGTAGTAGAGGAATCAATAATCACATGATCTTTGATGATGACTATAGGTACTAA

Protein Analysis

184

Amino Acids

22.03

Weight (kDa)

6.21

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 31 - 107 2.3e-28 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69700
fragaria_vesca FvH4_4g31530 FvH4_4g31530
malus_domestica MD13G1073600.v1.1 MD16G1074900.v1.1
prunus_persica Prupe.1G272400_v2.0.a1
pyrus_communis pycom16g06490
rosa_chinensis RchiOBHm_Chr4g0440041
rosa_laevigata RLG00000006213
rosa_multiflora Rmu_sc0001685.1_g000002 Rmu_sc0022520.1_g000002
rosa_roxburghii Rroxscaffold_5G00380980
rosa_rugosa Rorug04G0323400 Rorug04G0323500 Rorug04G0323600
rosa_samantha Rh4AG374400 Rh4BG386700 Rh4CG401200 Rh4DG381000
rosa_wichuraiana Rw4G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 446
AccB1I GGYRCC 1 cut(s) 446
AccB7I CCANNNNNTGG 1 cut(s) 354
AccII CGCG 1 cut(s) 396
AclWI GGATC 2 cut(s) 260, 323
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 3 cut(s) 10, 351, 374
AfaI GTAC 2 cut(s) 448, 551
AfiI CCNNNNNNNGG 1 cut(s) 354
AgsI TTSAA 5 cut(s) 9, 35, 191, 280, 379
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 2 cut(s) 260, 323
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 3 cut(s) 10, 351, 374
Asp718I GGTACC 1 cut(s) 446
AvaI CYCGRG 1 cut(s) 212
BalI TGGCCA 1 cut(s) 232
BanI GGYRCC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 113
BfmI CTRYAG 2 cut(s) 322, 544
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 448
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 110
BmuI ACTGGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 446
BsiHKCI CYCGRG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 232
BsoBI CYCGRG 1 cut(s) 212
Bsp143I GATC 5 cut(s) 125, 252, 328, 468, 528
BspANI GGCC 1 cut(s) 232
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 448
BspPI GGATC 2 cut(s) 260, 323
BspT107I GGYRCC 1 cut(s) 446
BsrI ACTGG 1 cut(s) 164
BssMI GATC 5 cut(s) 125, 252, 328, 468, 528
Bst4CI ACNGT 1 cut(s) 446
BstFNI CGCG 1 cut(s) 396
BstKTI GATC 5 cut(s) 128, 255, 331, 471, 531
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 5 cut(s) 125, 252, 328, 468, 528
BstSFI CTRYAG 2 cut(s) 322, 544
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 1 cut(s) 406
BstX2I RGATCY 2 cut(s) 252, 328
BstYI RGATCY 2 cut(s) 252, 328
BsuRI GGCC 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 2 cut(s) 111, 414
Csp6I GTAC 2 cut(s) 447, 550
CviAII CATG 3 cut(s) 238, 433, 526
CviJI RGCY 3 cut(s) 151, 232, 341
CviKI_1 RGCY 3 cut(s) 151, 232, 341
CviQI GTAC 2 cut(s) 447, 550
DpnI GATC 5 cut(s) 127, 254, 330, 470, 530
DpnII GATC 5 cut(s) 125, 252, 328, 468, 528
EaeI YGGCCR 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 212
EcoT22I ATGCAT 1 cut(s) 103
FaeI CATG 3 cut(s) 241, 436, 529
FatI CATG 3 cut(s) 237, 432, 525
Fnu4HI GCNGC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 420
GluI GCNGC 1 cut(s) 420
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 3 cut(s) 241, 436, 529
HinfI GANTC 1 cut(s) 513
Hpy188III TCNNGA 2 cut(s) 15, 212
Hpy99I CGWCG 3 cut(s) 401, 404, 407
HpyAV CCTTC 2 cut(s) 15, 472
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4V TGCA 1 cut(s) 101
Hsp92II CATG 3 cut(s) 241, 436, 529
KpnI GGTACC 1 cut(s) 450
Kzo9I GATC 5 cut(s) 125, 252, 328, 468, 528
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 2 cut(s) 145, 147
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 1 cut(s) 110
MaeIII GTNAC 2 cut(s) 76, 267
MalI GATC 5 cut(s) 127, 254, 330, 470, 530
MboI GATC 5 cut(s) 125, 252, 328, 468, 528
MboII GAAGA 3 cut(s) 23, 149, 376
MflI RGATCY 2 cut(s) 252, 328
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 5 cut(s) 10, 275, 351, 374, 379
MluNI TGGCCA 1 cut(s) 232
MnlI CCTC 6 cut(s) 102, 219, 342, 375, 488, 503
Mox20I TGGCCA 1 cut(s) 232
Mph1103I ATGCAT 1 cut(s) 103
MscI TGGCCA 1 cut(s) 232
MseI TTAA 1 cut(s) 474
Msp20I TGGCCA 1 cut(s) 232
MvnI CGCG 1 cut(s) 396
NdeII GATC 5 cut(s) 125, 252, 328, 468, 528
NlaIII CATG 3 cut(s) 241, 436, 529
NlaIV GGNNCC 1 cut(s) 448
NsiI ATGCAT 1 cut(s) 103
PaeR7I CTCGAG 1 cut(s) 212
PfeI GAWTC 1 cut(s) 513
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 448
PsuI RGATCY 2 cut(s) 252, 328
RsaI GTAC 2 cut(s) 448, 551
RsaNI GTAC 2 cut(s) 447, 550
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 5 cut(s) 125, 252, 328, 468, 528
SetI ASST 4 cut(s) 211, 343, 499, 551
SfaNI GCATC 1 cut(s) 110
SfcI CTRYAG 2 cut(s) 322, 544
Sfr274I CTCGAG 1 cut(s) 212
SlaI CTCGAG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 5 cut(s) 10, 275, 351, 374, 379
TaaI ACNGT 1 cut(s) 446
TaqI TCGA 1 cut(s) 213
TasI AATT 5 cut(s) 10, 275, 351, 374, 379
TfiI GAWTC 1 cut(s) 513
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 2 cut(s) 111, 421
TseI GCWGC 1 cut(s) 419
TspDTI ATGAA 4 cut(s) 156, 254, 298, 504
TspRI CASTG 2 cut(s) 111, 421
Van91I CCANNNNNTGG 1 cut(s) 354
XapI RAATTY 3 cut(s) 10, 351, 374
XhoI CTCGAG 1 cut(s) 212
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.