RLG00000006213

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010826
Physical Location & Seq
Reverse (-)
5285986 .. 5287010
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006213

Sequence Viewer

Length: 432 bp
ATGGGTCGTTCTACAGGCTCTGGAAATAACTTTCTCCAAGTTGTGGCCAACAACTTTGATGTTCTTGCTTTACCTCTTGTCACTCTAGTTTTCCCCTTCTTCCCGATTTGGGCTTATGCCAAGTTGATCGTGACTTGTTGGTTGGTGCTGCCTCAATTCAATGGCGCAGCATATGTTTATCGCCGCTTCATCCGACCCTTCTACATGAACCCACAGATCATAACTAATGGTCAGCAGATCTGGTATTTCCCAAGAACTAAGGATAAGAAGAACATCTTCAGCAAACCAGATGATGTTTTAACCGCCGCTGAGAAATATATGGAAGAACATGGCACTGAAGCTTTTGAGAGGCTCATAACCAAGACTGATAGGGAAGCAAGAGCCAGGAGGAGCAACAATTACATGATCTTTGATGATGATTATATGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

144

Amino Acids

16.85

Weight (kDa)

9.01

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 27 - 67 1.3e-11 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69700
fragaria_vesca FvH4_4g31530 FvH4_4g31530
malus_domestica MD13G1073600.v1.1 MD16G1074900.v1.1
prunus_persica Prupe.1G272400_v2.0.a1
pyrus_communis pycom16g06490
rosa_chinensis RchiOBHm_Chr4g0440041
rosa_laevigata RLG00000006213
rosa_multiflora Rmu_sc0001685.1_g000002 Rmu_sc0022520.1_g000002
rosa_roxburghii Rroxscaffold_5G00380980
rosa_rugosa Rorug04G0323400 Rorug04G0323500 Rorug04G0323600
rosa_samantha Rh4AG374400 Rh4BG386700 Rh4CG401200 Rh4DG381000
rosa_wichuraiana Rw4G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 43
AciI CCGC 3 cut(s) 184, 303, 306
AcoI YGGCCR 1 cut(s) 45
AcuI CTGAAG 2 cut(s) 262, 357
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 2 cut(s) 43, 109
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 148, 167
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 47
BbvI GCAGC 2 cut(s) 135, 179
BciT130I CCWGG 1 cut(s) 385
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 12
BglII AGATCT 1 cut(s) 237
BisI GCNGC 4 cut(s) 149, 168, 184, 306
BlsI GCNGC 4 cut(s) 150, 169, 185, 307
Bme1390I CCNGG 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 385
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 109
BseBI CCWGG 1 cut(s) 385
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 43, 109
BseMII CTCAG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 403
BseXI GCAGC 2 cut(s) 135, 179
BshFI GGCC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 43, 109
BsnI GGCC 1 cut(s) 47
Bsp143I GATC 4 cut(s) 126, 216, 237, 405
BspACI CCGC 3 cut(s) 184, 303, 306
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 301
BssMI GATC 4 cut(s) 126, 216, 237, 405
Bst2UI CCWGG 1 cut(s) 385
BstDEI CTNAG 2 cut(s) 258, 309
BstF5I GGATG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 4 cut(s) 129, 219, 240, 408
BstMBI GATC 4 cut(s) 126, 216, 237, 405
BstNI CCWGG 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 383
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 135, 179
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 333
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 427
CviAII CATG 3 cut(s) 205, 329, 403
CviJI RGCY 6 cut(s) 18, 47, 113, 341, 352, 383
CviKI_1 RGCY 6 cut(s) 18, 47, 113, 341, 352, 383
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 2 cut(s) 258, 309
DpnI GATC 4 cut(s) 128, 218, 239, 407
DpnII GATC 4 cut(s) 126, 216, 237, 405
EaeI YGGCCR 1 cut(s) 45
Eco57I CTGAAG 2 cut(s) 262, 357
EcoRII CCWGG 1 cut(s) 383
FaeI CATG 3 cut(s) 208, 332, 406
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 3 cut(s) 204, 328, 402
FauNDI CATATG 1 cut(s) 172
Fnu4HI GCNGC 4 cut(s) 149, 168, 184, 306
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 4 cut(s) 149, 168, 184, 306
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 166
GluI GCNGC 4 cut(s) 149, 168, 184, 306
HaeIII GGCC 1 cut(s) 47
HhaI GCGC 1 cut(s) 167
Hin1II CATG 3 cut(s) 208, 332, 406
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HindIII AAGCTT 1 cut(s) 339
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 3 cut(s) 21, 103, 130
HpyAV CCTTC 2 cut(s) 106, 208
HpyF3I CTNAG 2 cut(s) 258, 309
Hsp92II CATG 3 cut(s) 208, 332, 406
HspAI GCGC 1 cut(s) 165
Kzo9I GATC 4 cut(s) 126, 216, 237, 405
LmnI GCTCC 1 cut(s) 390
LpnPI CCDG 5 cut(s) 6, 226, 300, 370, 397
Lsp1109I GCAGC 2 cut(s) 135, 179
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 79, 130
MalI GATC 4 cut(s) 128, 218, 239, 407
MboI GATC 4 cut(s) 126, 216, 237, 405
MboII GAAGA 4 cut(s) 91, 268, 280, 335
MflI RGATCY 1 cut(s) 237
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 2 cut(s) 155, 397
MluNI TGGCCA 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 4 cut(s) 84, 162, 342, 381
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 275
MscI TGGCCA 1 cut(s) 47
MseI TTAA 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 385
MvaI CCWGG 1 cut(s) 385
NdeI CATATG 1 cut(s) 172
NdeII GATC 4 cut(s) 126, 216, 237, 405
NlaIII CATG 3 cut(s) 208, 332, 406
NmuCI GTSAC 2 cut(s) 79, 130
PdmI GAANNNNTTC 1 cut(s) 275
PflMI CCANNNNNTGG 1 cut(s) 43
PkrI GCNGC 4 cut(s) 150, 169, 185, 307
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 237
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 4 cut(s) 149, 168, 184, 306
Sau3AI GATC 4 cut(s) 126, 216, 237, 405
ScrFI CCNGG 1 cut(s) 385
SetI ASST 2 cut(s) 76, 343
SfcI CTRYAG 1 cut(s) 12
Sse9I AATT 2 cut(s) 155, 397
SsiI CCGC 3 cut(s) 184, 303, 306
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 383
TasI AATT 2 cut(s) 155, 397
TatI WGTACW 1 cut(s) 426
TauI GCSGC 2 cut(s) 186, 308
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 2 cut(s) 79, 130
TseI GCWGC 2 cut(s) 148, 167
Tsp45I GTSAC 2 cut(s) 79, 130
TspDTI ATGAA 2 cut(s) 178, 221
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.