Rh4CG401200

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0010826
Physical Location & Seq
Forward (+)
64964258 .. 64965466
1209 bp
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UTR
Exon/CDS
Intron
Rh4CG401200.1

Sequence Viewer

Length: 393 bp
ATGAACATCAACTTATTTCATTACTCCACTAATTACTATGATCCATTATGCTCGCACAGCTTCCCGATTTGGGCTTATGCCAAGTTGATCGTGACTTGTTGGTTGGTGCTGCCTCAATTCAATGGCGCAGCATATGTTTATCGCCGCTTCATCCGACCCTTCTACATGAACCCACAGATCATAACTAATGGTCAGCAGATCTGGTATTTCCCAAGAACCAAGGATAAGAAGAACATCTTCAGCAAACCAGATGATGTTTTAACCGCCGCTGAGAAATATATGGAAGAACATGGCACTGAAGCTTTTGAGAGGCTCATAACCAAGACTGATAGGGAAGCAAGAGCCAGGAGGAGCAACAATTACATGATCTTTGATGATGATTATATGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

130

Amino Acids

15.73

Weight (kDa)

8.49

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 11 - 54 2.1e-11 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69700
fragaria_vesca FvH4_4g31530 FvH4_4g31530
malus_domestica MD13G1073600.v1.1 MD16G1074900.v1.1
prunus_persica Prupe.1G272400_v2.0.a1
pyrus_communis pycom16g06490
rosa_chinensis RchiOBHm_Chr4g0440041
rosa_laevigata RLG00000006213
rosa_multiflora Rmu_sc0001685.1_g000002 Rmu_sc0022520.1_g000002
rosa_roxburghii Rroxscaffold_5G00380980
rosa_rugosa Rorug04G0323400 Rorug04G0323500 Rorug04G0323600
rosa_samantha Rh4AG374400 Rh4BG386700 Rh4CG401200 Rh4DG381000
rosa_wichuraiana Rw4G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 145, 264, 267
AclWI GGATC 1 cut(s) 35
AcuI CTGAAG 2 cut(s) 223, 318
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 1 cut(s) 344
AluBI AGCT 2 cut(s) 60, 302
AluI AGCT 2 cut(s) 60, 302
AlwI GGATC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 109, 128
Asp700I GAANNNNTTC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 96, 140
BciT130I CCWGG 1 cut(s) 346
BglII AGATCT 1 cut(s) 198
BisI GCNGC 4 cut(s) 110, 129, 145, 267
BlsI GCNGC 4 cut(s) 111, 130, 146, 268
Bme1390I CCNGG 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 346
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 364
BseXI GCAGC 2 cut(s) 96, 140
BslI CCNNNNNNNGG 1 cut(s) 70
Bsp143I GATC 5 cut(s) 40, 87, 177, 198, 366
BspACI CCGC 3 cut(s) 145, 264, 267
BspCNI CTCAG 1 cut(s) 262
BspPI GGATC 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 5 cut(s) 40, 87, 177, 198, 366
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 5 cut(s) 43, 90, 180, 201, 369
BstMBI GATC 5 cut(s) 40, 87, 177, 198, 366
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstNI CCWGG 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 344
BstV1I GCAGC 2 cut(s) 96, 140
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BtsCI GGATG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 53
CfoI GCGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 388
CviAII CATG 3 cut(s) 166, 290, 364
CviJI RGCY 5 cut(s) 60, 74, 302, 313, 344
CviKI_1 RGCY 5 cut(s) 60, 74, 302, 313, 344
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 1 cut(s) 270
DpnI GATC 5 cut(s) 42, 89, 179, 200, 368
DpnII GATC 5 cut(s) 40, 87, 177, 198, 366
Eco130I CCWWGG 1 cut(s) 219
Eco57I CTGAAG 2 cut(s) 223, 318
EcoRII CCWGG 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 3 cut(s) 169, 293, 367
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FatI CATG 3 cut(s) 165, 289, 363
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 110, 129, 145, 267
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 4 cut(s) 110, 129, 145, 267
GlaI GCGC 1 cut(s) 127
GluI GCNGC 4 cut(s) 110, 129, 145, 267
HhaI GCGC 1 cut(s) 128
Hin1II CATG 3 cut(s) 169, 293, 367
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 300
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 2 cut(s) 64, 91
HpyAV CCTTC 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 1 cut(s) 270
Hsp92II CATG 3 cut(s) 169, 293, 367
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 5 cut(s) 40, 87, 177, 198, 366
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 4 cut(s) 187, 261, 331, 358
Lsp1109I GCAGC 2 cut(s) 96, 140
MaeIII GTNAC 1 cut(s) 91
MalI GATC 5 cut(s) 42, 89, 179, 200, 368
MboI GATC 5 cut(s) 40, 87, 177, 198, 366
MboII GAAGA 3 cut(s) 229, 241, 296
MflI RGATCY 1 cut(s) 198
MluCI AATT 3 cut(s) 31, 116, 358
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 3 cut(s) 123, 303, 342
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 346
MvaI CCWGG 1 cut(s) 346
MwoI GCNNNNNNNGC 1 cut(s) 57
NdeI CATATG 1 cut(s) 133
NdeII GATC 5 cut(s) 40, 87, 177, 198, 366
NlaIII CATG 3 cut(s) 169, 293, 367
NmuCI GTSAC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 236
PkrI GCNGC 4 cut(s) 111, 130, 146, 268
Psp6I CCWGG 1 cut(s) 344
PspGI CCWGG 1 cut(s) 344
PsuI RGATCY 1 cut(s) 198
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 4 cut(s) 110, 129, 145, 267
Sau3AI GATC 5 cut(s) 40, 87, 177, 198, 366
ScrFI CCNGG 1 cut(s) 346
SetI ASST 2 cut(s) 62, 304
Sse9I AATT 3 cut(s) 31, 116, 358
SsiI CCGC 3 cut(s) 145, 264, 267
StyD4I CCNGG 1 cut(s) 344
StyI CCWWGG 1 cut(s) 219
TasI AATT 3 cut(s) 31, 116, 358
TatI WGTACW 1 cut(s) 387
TauI GCSGC 2 cut(s) 147, 269
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 2 cut(s) 109, 128
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 4 cut(s) 8, 17, 139, 182
TspRI CASTG 1 cut(s) 301
XmnI GAANNNNTTC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.