Prupe.1G272400_v2.0.a1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010826
Physical Location & Seq
Reverse (-)
27909307 .. 27911323
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G272400.1

Sequence Viewer

Length: 540 bp
ATGGGTCGCAATAATTCTGGGAATTCGAATAATTTTCTCCAAGTTGTGGCTAGCAACTTTGATGTTCTTGCTTTGCCTCTGATCACACTGGTTTATCCCCTATATGCTTCGATTAAGGCGATAGAGACCAAGTCTCGCACCGATGATCAACAATGGCTTACCTATTGGGTTCTGTATTCTTTGATGACAATCTTTGAGCTCACATTTGCCAAAGTCCTTGAATGCTTTCCCATTTGGCCGTATGCCAAGTTGATTTTCACGTGCTGGTTGGTGCTGCCACAATTCAATGGAGCAGCGTATGTTTATCGGCACTTTATCAGACCCTACTATATGAACCCACCATCACCTCATCAGATGTGGTATATCCCAAGGAAGAAGAACATCTTCAGCAAACCGGATGACGTTTTAACTGCTGCTGAAAAATATATGGAAGAGCATGGCACAGAAGCTTTTGAAAGGCTCATAACCAAGGCTGATAGAGAAGCAAGAAGCAGGAAGAGCCACAATTACATGATCTTTGATGATGATTATATGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

180

Amino Acids

21.24

Weight (kDa)

7.73

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69700
fragaria_vesca FvH4_4g31530 FvH4_4g31530
malus_domestica MD13G1073600.v1.1 MD16G1074900.v1.1
prunus_persica Prupe.1G272400_v2.0.a1
pyrus_communis pycom16g06490
rosa_chinensis RchiOBHm_Chr4g0440041
rosa_laevigata RLG00000006213
rosa_multiflora Rmu_sc0001685.1_g000002 Rmu_sc0022520.1_g000002
rosa_roxburghii Rroxscaffold_5G00380980
rosa_rugosa Rorug04G0323400 Rorug04G0323500 Rorug04G0323600
rosa_samantha Rh4AG374400 Rh4BG386700 Rh4CG401200 Rh4DG381000
rosa_wichuraiana Rw4G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 236
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 370
AcvI CACGTG 1 cut(s) 261
AfaI GTAC 1 cut(s) 536
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 3 cut(s) 221, 286, 455
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 2 cut(s) 199, 449
AluI AGCT 2 cut(s) 199, 449
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 2 cut(s) 119, 138
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 3 cut(s) 274, 293, 413
ApoI RAATTY 1 cut(s) 22
Asp700I GAANNNNTTC 2 cut(s) 225, 383
AsuHPI GGTGA 1 cut(s) 336
AsuII TTCGAA 1 cut(s) 26
AsuNHI GCTAGC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 201
BbrPI CACGTG 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 3 cut(s) 261, 305, 400
BccI CCATC 1 cut(s) 349
BceAI ACGGC 1 cut(s) 223
BclI TGATCA 2 cut(s) 81, 145
BcoDI GTCTC 2 cut(s) 119, 138
BfaI CTAG 1 cut(s) 51
BisI GCNGC 3 cut(s) 275, 294, 414
BlsI GCNGC 3 cut(s) 276, 295, 415
BmtI GCTAGC 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 26
BsaAI YACGTR 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 368, 468
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 368, 468
BseGI GGATG 1 cut(s) 403
BseJI GATNNNNATC 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 46
BseNI ACTGG 1 cut(s) 93
BseXI GCAGC 3 cut(s) 261, 305, 400
BshFI GGCC 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 2 cut(s) 119, 138
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 119
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 81, 145, 513
BspANI GGCC 1 cut(s) 238
BspOI GCTAGC 1 cut(s) 54
BspQI GCTCTTC 2 cut(s) 426, 491
BspT104I TTCGAA 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 368, 468
BssMI GATC 3 cut(s) 81, 145, 513
BssT1I CCWWGG 2 cut(s) 368, 468
Bst6I CTCTTC 2 cut(s) 426, 491
BstBAI YACGTR 1 cut(s) 261
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 52
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 3 cut(s) 84, 148, 516
BstMAI GTCTC 2 cut(s) 119, 138
BstMBI GATC 3 cut(s) 81, 145, 513
BstMWI GCNNNNNNNGC 1 cut(s) 498
BstV1I GCAGC 3 cut(s) 261, 305, 400
BsuRI GGCC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 535
CviAII CATG 2 cut(s) 437, 511
CviJI RGCY 8 cut(s) 50, 157, 199, 238, 449, 460, 473, 501
CviKI_1 RGCY 8 cut(s) 50, 157, 199, 238, 449, 460, 473, 501
CviQI GTAC 1 cut(s) 535
DpnI GATC 3 cut(s) 83, 147, 515
DpnII GATC 3 cut(s) 81, 145, 513
EaeI YGGCCR 1 cut(s) 236
Eam1104I CTCTTC 2 cut(s) 426, 491
EarI CTCTTC 2 cut(s) 426, 491
Ecl136II GAGCTC 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 368, 468
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 370
Eco72I CACGTG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 22
EcoT14I CCWWGG 2 cut(s) 368, 468
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 2 cut(s) 368, 468
FaeI CATG 2 cut(s) 440, 514
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FatI CATG 2 cut(s) 436, 510
FbaI TGATCA 2 cut(s) 81, 145
Fnu4HI GCNGC 3 cut(s) 275, 294, 414
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 3 cut(s) 275, 294, 414
FspBI CTAG 1 cut(s) 51
GluI GCNGC 3 cut(s) 275, 294, 414
HaeIII GGCC 1 cut(s) 238
HapII CCGG 1 cut(s) 395
Hin1II CATG 2 cut(s) 440, 514
HindIII AAGCTT 1 cut(s) 447
HpaII CCGG 1 cut(s) 395
HphI GGTGA 1 cut(s) 336
Hpy188I TCNGA 3 cut(s) 81, 320, 354
HpyCH4IV ACGT 2 cut(s) 260, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 498
HpySE526I ACGT 2 cut(s) 260, 402
Hsp92II CATG 2 cut(s) 440, 514
Ksp22I TGATCA 2 cut(s) 81, 145
Kzo9I GATC 3 cut(s) 81, 145, 513
LguI GCTCTTC 2 cut(s) 426, 491
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 5 cut(s) 3, 74, 250, 408, 478
Lsp1109I GCAGC 3 cut(s) 261, 305, 400
MaeI CTAG 1 cut(s) 51
MaeII ACGT 2 cut(s) 260, 402
MalI GATC 3 cut(s) 83, 147, 515
MboI GATC 3 cut(s) 81, 145, 513
MboII GAAGA 5 cut(s) 376, 385, 388, 443, 508
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 5 cut(s) 13, 22, 31, 281, 505
MnlI CCTC 2 cut(s) 87, 357
MroXI GAANNNNTTC 2 cut(s) 225, 383
MseI TTAA 2 cut(s) 114, 407
MspI CCGG 1 cut(s) 395
Mva1269I GAATGC 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 498
NdeII GATC 3 cut(s) 81, 145, 513
NheI GCTAGC 1 cut(s) 50
NlaIII CATG 2 cut(s) 440, 514
NspV TTCGAA 1 cut(s) 26
PciSI GCTCTTC 2 cut(s) 426, 491
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PctI GAATGC 1 cut(s) 227
PdmI GAANNNNTTC 2 cut(s) 225, 383
PflFI GACNNNGTC 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 46
PkrI GCNGC 3 cut(s) 276, 295, 415
PmaCI CACGTG 1 cut(s) 261
PmlI CACGTG 1 cut(s) 261
Ppu21I YACGTR 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 201
PspCI CACGTG 1 cut(s) 261
PsyI GACNNNGTC 1 cut(s) 130
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
SacI GAGCTC 1 cut(s) 201
SapI GCTCTTC 2 cut(s) 426, 491
SaqAI TTAA 2 cut(s) 114, 407
SatI GCNGC 3 cut(s) 275, 294, 414
Sau3AI GATC 3 cut(s) 81, 145, 513
SduI GDGCHC 1 cut(s) 201
SetI ASST 6 cut(s) 164, 201, 263, 349, 405, 451
SfuI TTCGAA 1 cut(s) 26
Sse9I AATT 5 cut(s) 13, 22, 31, 281, 505
SspMI CTAG 1 cut(s) 51
SstI GAGCTC 1 cut(s) 201
StyI CCWWGG 2 cut(s) 368, 468
TaiI ACGT 2 cut(s) 263, 405
TaqI TCGA 2 cut(s) 26, 110
TasI AATT 5 cut(s) 13, 22, 31, 281, 505
TatI WGTACW 1 cut(s) 534
Tru1I TTAA 2 cut(s) 114, 407
Tru9I TTAA 2 cut(s) 114, 407
TscAI CASTG 1 cut(s) 93
TseI GCWGC 3 cut(s) 274, 293, 413
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 1 cut(s) 93
Tth111I GACNNNGTC 1 cut(s) 130
Van91I CCANNNNNTGG 1 cut(s) 46
XapI RAATTY 1 cut(s) 22
XmnI GAANNNNTTC 2 cut(s) 225, 383
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.