Rroxscaffold_5G00380980

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010826
Physical Location & Seq
Forward (+)
61064026 .. 61065374
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380980.1

Sequence Viewer

Length: 555 bp
ATGGGTCGTTCTACAGGCTCTGGAAATAACTTTCTCCAAGTTGTGGCCAACAACTTTGATGTTCTTGCTTTACCTCTTGTCACTCTAGTTTTCCCCTTATATGCTTCGATTAGGGCAATAGAGACCAAGTCTCGCACTGATGATCAGCAATGGCTTACGTACTGGGTTTTGTATTCTCTCATAACACTCTTCGAGATGACCTTTGCCAAAGTCCTTGAATGCTTCCCGATTTGGGCTTATGCCAAGTTGATCGTGACTTGTTGGTTGGTGCTGCCTCAATTCAATGGCGCAGCATATGTTTATCGCCGCTTCATCCGACCCTTCTACATGAACCCACAGATCATAACTAATGGTCAGCAGATCTGGTATTTCCCAAGAACCAAGGATAAGAAGAACATCTTCAGCAAACCAGATGATGTATTAACCGCCGCTGAGAAATATATGGAAGAACATGGCACTGAAGCTTTTGAGAGGCTCATAACCAAGACTGATAGGGAAGCGAGAGCCAGGAGGAGCAACAATTACATGATCTTTGATGATGATTATATGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

184

Amino Acids

21.73

Weight (kDa)

8.46

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 32 - 108 1.2e-29 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69700
fragaria_vesca FvH4_4g31530 FvH4_4g31530
malus_domestica MD13G1073600.v1.1 MD16G1074900.v1.1
prunus_persica Prupe.1G272400_v2.0.a1
pyrus_communis pycom16g06490
rosa_chinensis RchiOBHm_Chr4g0440041
rosa_laevigata RLG00000006213
rosa_multiflora Rmu_sc0001685.1_g000002 Rmu_sc0022520.1_g000002
rosa_roxburghii Rroxscaffold_5G00380980
rosa_rugosa Rorug04G0323400 Rorug04G0323500 Rorug04G0323600
rosa_samantha Rh4AG374400 Rh4BG386700 Rh4CG401200 Rh4DG381000
rosa_wichuraiana Rw4G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 43
AciI CCGC 3 cut(s) 307, 426, 429
AcoI YGGCCR 1 cut(s) 45
AcuI CTGAAG 2 cut(s) 385, 480
AfaI GTAC 2 cut(s) 161, 551
AfiI CCNNNNNNNGG 2 cut(s) 43, 232
AgsI TTSAA 2 cut(s) 218, 283
AjnI CCWGG 1 cut(s) 506
AluBI AGCT 1 cut(s) 464
AluI AGCT 1 cut(s) 464
Alw26I GTCTC 2 cut(s) 116, 135
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 271, 290
Asp700I GAANNNNTTC 1 cut(s) 398
AspLEI GCGC 1 cut(s) 290
BalI TGGCCA 1 cut(s) 47
BbvI GCAGC 2 cut(s) 258, 302
BciT130I CCWGG 1 cut(s) 508
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 2 cut(s) 116, 135
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 12
BglII AGATCT 1 cut(s) 360
BisI GCNGC 4 cut(s) 272, 291, 307, 429
BlsI GCNGC 4 cut(s) 273, 292, 308, 430
Bme1390I CCNGG 1 cut(s) 508
BmrFI CCNGG 1 cut(s) 508
BmrI ACTGGG 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 172
BsaAI YACGTR 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 381
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 232
Bse1I ACTGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 155
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 43, 232
BseMI GCAATG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 526
BseXI GCAGC 2 cut(s) 258, 302
BshFI GGCC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 43, 232
BsmAI GTCTC 2 cut(s) 116, 135
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 116
Bsp143I GATC 5 cut(s) 142, 249, 339, 360, 528
BspACI CCGC 3 cut(s) 307, 426, 429
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 424
BspTNI GGTCTC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 155
BsrI ACTGG 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 5 cut(s) 142, 249, 339, 360, 528
BssT1I CCWWGG 1 cut(s) 381
Bst2UI CCWGG 1 cut(s) 508
Bst6I CTCTTC 1 cut(s) 194
BstBAI YACGTR 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 432
BstF5I GGATG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 5 cut(s) 145, 252, 342, 363, 531
BstMAI GTCTC 2 cut(s) 116, 135
BstMBI GATC 5 cut(s) 142, 249, 339, 360, 528
BstNI CCWGG 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 506
BstSFI CTRYAG 1 cut(s) 12
BstSNI TACGTA 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 258, 302
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 135, 456
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 290
Csp6I GTAC 2 cut(s) 160, 550
CviAII CATG 3 cut(s) 328, 452, 526
CviJI RGCY 7 cut(s) 18, 47, 154, 236, 464, 475, 506
CviKI_1 RGCY 7 cut(s) 18, 47, 154, 236, 464, 475, 506
CviQI GTAC 2 cut(s) 160, 550
DdeI CTNAG 1 cut(s) 432
DpnI GATC 5 cut(s) 144, 251, 341, 362, 530
DpnII GATC 5 cut(s) 142, 249, 339, 360, 528
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco105I TACGTA 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 385, 480
EcoRII CCWGG 1 cut(s) 506
EcoT14I CCWWGG 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 3 cut(s) 331, 455, 529
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FatI CATG 3 cut(s) 327, 451, 525
FauNDI CATATG 1 cut(s) 295
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 4 cut(s) 272, 291, 307, 429
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 4 cut(s) 272, 291, 307, 429
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 289
GluI GCNGC 4 cut(s) 272, 291, 307, 429
HaeIII GGCC 1 cut(s) 47
HhaI GCGC 1 cut(s) 290
Hin1II CATG 3 cut(s) 331, 455, 529
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 462
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 4 cut(s) 21, 193, 226, 253
HpyAV CCTTC 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 3 cut(s) 331, 455, 529
HspAI GCGC 1 cut(s) 288
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 5 cut(s) 142, 249, 339, 360, 528
LmnI GCTCC 1 cut(s) 513
LpnPI CCDG 6 cut(s) 6, 148, 349, 423, 493, 520
Lsp1109I GCAGC 2 cut(s) 258, 302
MaeI CTAG 1 cut(s) 86
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 79, 253
MalI GATC 5 cut(s) 144, 251, 341, 362, 530
MboI GATC 5 cut(s) 142, 249, 339, 360, 528
MboII GAAGA 4 cut(s) 181, 391, 403, 458
MflI RGATCY 1 cut(s) 360
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 2 cut(s) 278, 520
MluNI TGGCCA 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 4 cut(s) 84, 285, 465, 504
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 398
MscI TGGCCA 1 cut(s) 47
MseI TTAA 1 cut(s) 422
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 508
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 1 cut(s) 508
NdeI CATATG 1 cut(s) 295
NdeII GATC 5 cut(s) 142, 249, 339, 360, 528
NlaIII CATG 3 cut(s) 331, 455, 529
NmuCI GTSAC 2 cut(s) 79, 253
PctI GAATGC 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 398
PflFI GACNNNGTC 1 cut(s) 127
PflMI CCANNNNNTGG 1 cut(s) 43
PkrI GCNGC 4 cut(s) 273, 292, 308, 430
Ppu21I YACGTR 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 506
PspGI CCWGG 1 cut(s) 506
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 360
PsyI GACNNNGTC 1 cut(s) 127
RsaI GTAC 2 cut(s) 161, 551
RsaNI GTAC 2 cut(s) 160, 550
SaqAI TTAA 1 cut(s) 422
SatI GCNGC 4 cut(s) 272, 291, 307, 429
Sau3AI GATC 5 cut(s) 142, 249, 339, 360, 528
ScrFI CCNGG 1 cut(s) 508
SetI ASST 4 cut(s) 76, 161, 203, 466
SfcI CTRYAG 1 cut(s) 12
SnaBI TACGTA 1 cut(s) 159
Sse9I AATT 2 cut(s) 278, 520
SsiI CCGC 3 cut(s) 307, 426, 429
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 506
StyI CCWWGG 1 cut(s) 381
TaiI ACGT 1 cut(s) 161
TaqI TCGA 2 cut(s) 107, 192
TasI AATT 2 cut(s) 278, 520
TatI WGTACW 1 cut(s) 549
TauI GCSGC 2 cut(s) 309, 431
Tru1I TTAA 1 cut(s) 422
Tru9I TTAA 1 cut(s) 422
TscAI CASTG 2 cut(s) 142, 463
TseFI GTSAC 2 cut(s) 79, 253
TseI GCWGC 2 cut(s) 271, 290
Tsp45I GTSAC 2 cut(s) 79, 253
TspDTI ATGAA 2 cut(s) 301, 344
TspRI CASTG 2 cut(s) 142, 463
Tth111I GACNNNGTC 1 cut(s) 127
Van91I CCANNNNNTGG 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.