FvH4_4g31530

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010826
Physical Location & Seq
Forward (+)
30622671 .. 30624318
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31530.t1

Sequence Viewer

Length: 564 bp
ATGGGTCGTTCTACAGGCTCTGGGAATAACTTTCTTCAAGTTGTGGCCAATAACTTTGATGTTCTTGCTTTACCTCTCGTCACTCTAGTCTTCCCCTTATACGCTTCGATTAGGGCGATAGAGACCAAGTCTCGTACTGATGATCAGCAATGGCTTACCTACTGGGTTCTGTATTCTCTCATAACACTCTTCGAGATCACCTTCGCCAAAATCCTCGAATGCTTCCCGATCTGGGCATATGGGAAGCTGATCCTGACTTGTTGGCTGGTGCTGCCACAGTTCAATGGGGCAGCCTATGTTTACCGCCGCTTCATCCGACCCTTTTACATGAACCCACAGATGATGACTAATATTAATAGTCAGCAGATCTGGTATTTCCCAAGAAGCAAGGATAAGAAGAACATCTTCAGCAAACCAGATGATGTTTTAACTGCCGCTGAGAAGTACATGGAAGAACATGGCACTGAAGCTTTTGAGAGGCTTATCACCAAGACTGATAGAGAAGCAAGAGCGAGAAGCAGGAGCAACAATTACCTGATCTTTGACGATGATTACATGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

188

Amino Acids

22.07

Weight (kDa)

8.46

Isoelectric Point (pI)

55.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 32 - 108 2.3e-29 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010826)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69700
fragaria_vesca FvH4_4g31530 FvH4_4g31530
malus_domestica MD13G1073600.v1.1 MD16G1074900.v1.1
prunus_persica Prupe.1G272400_v2.0.a1
pyrus_communis pycom16g06490
rosa_chinensis RchiOBHm_Chr4g0440041
rosa_laevigata RLG00000006213
rosa_multiflora Rmu_sc0001685.1_g000002 Rmu_sc0022520.1_g000002
rosa_roxburghii Rroxscaffold_5G00380980
rosa_rugosa Rorug04G0323400 Rorug04G0323500 Rorug04G0323600
rosa_samantha Rh4AG374400 Rh4BG386700 Rh4CG401200 Rh4DG381000
rosa_wichuraiana Rw4G032030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 304, 307, 435
AclWI GGATC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 45
AcuI CTGAAG 2 cut(s) 391, 486
AfaI GTAC 2 cut(s) 136, 446
AfiI CCNNNNNNNGG 1 cut(s) 232
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 2 cut(s) 38, 283
AluBI AGCT 2 cut(s) 247, 470
AluI AGCT 2 cut(s) 247, 470
Alw26I GTCTC 2 cut(s) 116, 135
AlwI GGATC 1 cut(s) 244
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 271, 290
AseI ATTAAT 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 190, 478
BalI TGGCCA 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 82
BbvI GCAGC 2 cut(s) 258, 302
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 2 cut(s) 116, 135
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 12
BglII AGATCT 1 cut(s) 366
BisI GCNGC 4 cut(s) 272, 291, 307, 435
BlsI GCNGC 4 cut(s) 273, 292, 308, 436
BmrI ACTGGG 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 155
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 258, 302
BshFI GGCC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 2 cut(s) 116, 135
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 116
Bsp143I GATC 6 cut(s) 142, 195, 228, 249, 366, 537
BspACI CCGC 3 cut(s) 304, 307, 435
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 430
BspPI GGATC 1 cut(s) 244
BspTNI GGTCTC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 155
BsrI ACTGG 1 cut(s) 167
BssMI GATC 6 cut(s) 142, 195, 228, 249, 366, 537
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 438
BstF5I GGATG 1 cut(s) 312
BstKTI GATC 6 cut(s) 145, 198, 231, 252, 369, 540
BstMAI GTCTC 2 cut(s) 116, 135
BstMBI GATC 6 cut(s) 142, 195, 228, 249, 366, 537
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 559
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 258, 302
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 462
CaiI CAGNNNCTG 1 cut(s) 20
Csp6I GTAC 2 cut(s) 135, 445
CviAII CATG 4 cut(s) 328, 448, 458, 556
CviJI RGCY 8 cut(s) 18, 47, 154, 247, 265, 293, 470, 481
CviKI_1 RGCY 8 cut(s) 18, 47, 154, 247, 265, 293, 470, 481
CviQI GTAC 2 cut(s) 135, 445
DdeI CTNAG 1 cut(s) 438
DpnI GATC 6 cut(s) 144, 197, 230, 251, 368, 539
DpnII GATC 6 cut(s) 142, 195, 228, 249, 366, 537
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 391, 486
FaeI CATG 4 cut(s) 331, 451, 461, 559
FaiI YATR 9 cut(s) 100, 182, 238, 240, 297, 329, 449, 459, 557
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FatI CATG 4 cut(s) 327, 447, 457, 555
FauNDI CATATG 1 cut(s) 238
FbaI TGATCA 1 cut(s) 142
Fnu4HI GCNGC 4 cut(s) 272, 291, 307, 435
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 4 cut(s) 272, 291, 307, 435
FspBI CTAG 1 cut(s) 86
GluI GCNGC 4 cut(s) 272, 291, 307, 435
HaeIII GGCC 1 cut(s) 47
Hin1II CATG 4 cut(s) 331, 451, 461, 559
HindIII AAGCTT 1 cut(s) 468
HphI GGTGA 2 cut(s) 190, 478
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 3 cut(s) 193, 226, 253
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 1 cut(s) 438
Hsp92II CATG 4 cut(s) 331, 451, 461, 559
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 6 cut(s) 142, 195, 228, 249, 366, 537
LmnI GCTCC 1 cut(s) 522
LpnPI CCDG 9 cut(s) 6, 148, 217, 251, 266, 355, 429, 505, 548
Lsp1109I GCAGC 2 cut(s) 258, 302
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 79
MalI GATC 6 cut(s) 144, 197, 230, 251, 368, 539
MboI GATC 6 cut(s) 142, 195, 228, 249, 366, 537
MboII GAAGA 6 cut(s) 26, 82, 181, 397, 409, 464
MflI RGATCY 1 cut(s) 366
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 1 cut(s) 529
MluNI TGGCCA 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 3 cut(s) 84, 224, 471
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 404
MscI TGGCCA 1 cut(s) 47
MseI TTAA 2 cut(s) 354, 428
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 437
Mva1269I GAATGC 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 271
NdeI CATATG 1 cut(s) 238
NdeII GATC 6 cut(s) 142, 195, 228, 249, 366, 537
NlaIII CATG 4 cut(s) 331, 451, 461, 559
NmuCI GTSAC 1 cut(s) 79
NspI RCATGY 1 cut(s) 559
PciI ACATGT 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PctI GAATGC 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 404
PflFI GACNNNGTC 1 cut(s) 127
PkrI GCNGC 4 cut(s) 273, 292, 308, 436
PscI ACATGT 1 cut(s) 555
PshBI ATTAAT 1 cut(s) 354
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 366
PsyI GACNNNGTC 1 cut(s) 127
RsaI GTAC 2 cut(s) 136, 446
RsaNI GTAC 2 cut(s) 135, 445
SaqAI TTAA 2 cut(s) 354, 428
SatI GCNGC 4 cut(s) 272, 291, 307, 435
Sau3AI GATC 6 cut(s) 142, 195, 228, 249, 366, 537
SetI ASST 6 cut(s) 76, 161, 203, 249, 472, 537
SfcI CTRYAG 1 cut(s) 12
Sse9I AATT 1 cut(s) 529
SsiI CCGC 3 cut(s) 304, 307, 435
SspI AATATT 1 cut(s) 352
SspMI CTAG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 279
TaqI TCGA 3 cut(s) 107, 192, 216
TasI AATT 1 cut(s) 529
TatI WGTACW 1 cut(s) 444
TauI GCSGC 2 cut(s) 309, 437
Tru1I TTAA 2 cut(s) 354, 428
Tru9I TTAA 2 cut(s) 354, 428
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 2 cut(s) 271, 290
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 301, 344
TspRI CASTG 1 cut(s) 469
Tth111I GACNNNGTC 1 cut(s) 127
VspI ATTAAT 1 cut(s) 354
XceI RCATGY 1 cut(s) 559
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.