AT1G70230

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
26450166 .. 26452039
1874 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70230.1

Sequence Viewer

Length: 1251 bp
ATGGGATTAAACGAGCAACAAAATGTTCCAAGTCAGAGGAAGATCATAGTTTTTATAGTCTTAGCTTTTATACCAATAGCTCTGTTTCGACTCTGTTTTAATAATCCATTCTCCTCCATTAAAGACACCTCTCTTCAAGACTCTGCAGCTAACGTTGTGATCACTAGCTTCTCTTCATCTTCTCAAGAAGAAGAAAGCCAAGAGAGTTTTGATCATATACAAGATGAACCTTTATGCGATTATACGCAAGGGAACTGGGTCAGAGACGAGATTGGTCCACTCTACAATGGTTCAACATGTGGAACAATCAAGGATGGTCAGAATTGTTTCCGCCATGGTAGACCTGATTCCGGTTATCTTTACTGGAAATGGAAACCAAACGAATGCGATATACCGAGATTCGACTCGAACCGGTTTCTTGATCTTATGAGAGATAAGCATCTAGCTTTTATCGGTGATTCCATGGCTAGAAATCAGCTTGAGTCTCTTTTATGCTTGCTCTCTACCGTCTCTAGCCCTGATCTCGTCTATAGAAACGGAGAAGACAATAAATTCAGAAGATGGCGTTTCGAGTCACACAACGTCACTGTCTCGGTTTACTGGTCCCCGTTTTTGGTGGCCGGTTTAGAGAAATCGGGAAACTTGGACCACAATGTATTGCACATAGACCGCGTGGATGAGAGATGGGGCAATGATTTAGAACGTTTTGATACGGTCGTAGTCTCTGTGGGACATTGGTTTCTGCATCCAGCGGTTTACTACGAGTCTGGTTCGGTTTTGGGATGTCATTCTTGTGAAACAAGTAACTGTACCGAGGTAGGGTTTTATGATGTATTTAGAAAAGCGATAAGAACAACGTTGAGAGCGGTTGCTGGAAGTGGTCGTGAGGTGATCTTGACGACATTTTCGCCATCACATTTTGAAGGACGGCCTTGGGACAGTCTCGGCGCATGTAACATGACCAAGCCGTACGAAGGGAAGGTTTTAGAAGGTCTGGACTTGGACATGCGCAAAATAGAAATTGAGGAATATACGGCGGCTGCGGCTGAGGTGAGGTTAGAGGTGTTGGACGTGACGGCTATGTCGGTACTGAGACCAGACGGACATCCTGGTCCGTACATGTACGCGGACCCGTTCAAGAACGGTGTACCGGAGAGAATTCCTAATGATTGTTTGCATTGGTGTCTACCTGGTCCTGTCGACACGTGGAACGAGATCATGATCGAGATGTTGCGGCGATGGAAGGTTTAA

Protein Analysis

416

Amino Acids

47.47

Weight (kDa)

5.18

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 79 - 130 3.2e-21 PMR5 N terminal Domain
PC-Esterase PF13839 131 - 410 1.5e-91 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011918)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1081, 1110
Acc16I TGCGCA 1 cut(s) 1010
AccBSI CCGCTC 1 cut(s) 866
AccI GTMKAC 3 cut(s) 340, 1186, 1200
AccII CGCG 2 cut(s) 672, 1127
AciI CCGC 8 cut(s) 331, 670, 752, 866, 1037, 1043, 1127, 1234
AclI AACGTT 3 cut(s) 153, 703, 857
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 2 cut(s) 551, 1158
AcvI CACGTG 1 cut(s) 1206
AfaI GTAC 6 cut(s) 811, 971, 1089, 1118, 1124, 1149
AfiI CCNNNNNNNGG 4 cut(s) 350, 613, 819, 974
AflIII ACRYGT 3 cut(s) 296, 1119, 1203
AgeI ACCGGT 1 cut(s) 411
AgsI TTSAA 4 cut(s) 137, 294, 923, 1138
AjiI CACGTC 1 cut(s) 1072
AjnI CCWGG 2 cut(s) 1108, 1189
AluBI AGCT 6 cut(s) 65, 80, 149, 168, 446, 478
AluI AGCT 6 cut(s) 65, 80, 149, 168, 446, 478
Alw26I GTCTC 7 cut(s) 258, 489, 514, 595, 727, 947, 1087
AoxI GGCC 2 cut(s) 618, 929
ApeKI GCWGC 2 cut(s) 146, 1040
ApoI RAATTY 2 cut(s) 551, 1158
ArsI GACNNNNNNTTYG 2 cut(s) 889, 921
AsiGI ACCGGT 1 cut(s) 411
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 2 cut(s) 950, 1011
AspS9I GGNCC 6 cut(s) 275, 603, 646, 1112, 1129, 1193
AsuHPI GGTGA 3 cut(s) 467, 901, 1063
AvaII GGWCC 6 cut(s) 275, 603, 646, 1112, 1129, 1193
BaeI ACNNNNGTAYC 2 cut(s) 702, 735
BbrPI CACGTG 1 cut(s) 1206
BbsI GAAGAC 1 cut(s) 549
BbvCI CCTCAGC 1 cut(s) 1047
BbvI GCAGC 2 cut(s) 158, 1027
BccI CCATC 5 cut(s) 308, 555, 678, 919, 1233
BceAI ACGGC 4 cut(s) 944, 952, 1050, 1092
BciT130I CCWGG 2 cut(s) 1110, 1191
BclI TGATCA 2 cut(s) 159, 211
BcoDI GTCTC 7 cut(s) 258, 489, 514, 595, 727, 947, 1087
BfaI CTAG 4 cut(s) 165, 443, 468, 513
BfmI CTRYAG 2 cut(s) 144, 529
BisI GCNGC 5 cut(s) 147, 1038, 1041, 1044, 1235
BlsI GCNGC 5 cut(s) 148, 1039, 1042, 1045, 1236
Bme1390I CCNGG 2 cut(s) 1110, 1191
Bme18I GGWCC 6 cut(s) 275, 603, 646, 1112, 1129, 1193
BmgBI CACGTC 1 cut(s) 1072
BmgT120I GGNCC 6 cut(s) 275, 603, 646, 1112, 1129, 1193
BmiI GGNNCC 2 cut(s) 605, 1131
BmrFI CCNGG 2 cut(s) 1110, 1191
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 2 cut(s) 448, 754
BmuI ACTGGG 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 549
Bpu10I CCTNAGC 1 cut(s) 1047
BpuEI CTTGAG 2 cut(s) 168, 500
BsaAI YACGTR 1 cut(s) 1206
BsaBI GATNNNNATC 2 cut(s) 438, 1220
BsaI GGTCTC 1 cut(s) 1087
BsaJI CCNNGG 4 cut(s) 334, 462, 813, 932
BsaWI WCCGGW 3 cut(s) 350, 411, 1150
Bsc4I CCNNNNNNNGG 4 cut(s) 350, 613, 819, 974
Bse118I RCCGGY 2 cut(s) 411, 620
Bse1I ACTGG 3 cut(s) 260, 368, 605
Bse3DI GCAATG 1 cut(s) 697
Bse8I GATNNNNATC 2 cut(s) 438, 1220
BseBI CCWGG 2 cut(s) 1110, 1191
BseDI CCNNGG 4 cut(s) 334, 462, 813, 932
BseGI GGATG 5 cut(s) 319, 682, 745, 788, 1105
BseJI GATNNNNATC 2 cut(s) 438, 1220
BseLI CCNNNNNNNGG 4 cut(s) 350, 613, 819, 974
BseMI GCAATG 1 cut(s) 697
BseMII CTCAG 2 cut(s) 1038, 1082
BseNI ACTGG 3 cut(s) 260, 368, 605
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 2 cut(s) 158, 1027
Bsh1236I CGCG 2 cut(s) 672, 1127
Bsh1285I CGRYCG 1 cut(s) 717
BshFI GGCC 2 cut(s) 620, 931
BshTI ACCGGT 1 cut(s) 411
BsiEI CGRYCG 1 cut(s) 717
BsiSI CCGG 4 cut(s) 351, 412, 621, 1151
BsiWI CGTACG 1 cut(s) 969
BslFI GGGAC 3 cut(s) 589, 744, 950
BslI CCNNNNNNNGG 4 cut(s) 350, 613, 819, 974
BsmAI GTCTC 7 cut(s) 258, 489, 514, 595, 727, 947, 1087
BsmBI CGTCTC 2 cut(s) 258, 514
BsmFI GGGAC 3 cut(s) 589, 744, 950
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 2 cut(s) 620, 931
Bso31I GGTCTC 1 cut(s) 1087
Bsp143I GATC 8 cut(s) 42, 159, 211, 421, 520, 891, 1215, 1221
Bsp19I CCATGG 2 cut(s) 334, 462
BspACI CCGC 8 cut(s) 331, 670, 752, 866, 1037, 1043, 1127, 1234
BspANI GGCC 2 cut(s) 620, 931
BspCNI CTCAG 2 cut(s) 1039, 1083
BspFNI CGCG 2 cut(s) 672, 1127
BspHI TCATGA 1 cut(s) 1218
BspLI GGNNCC 2 cut(s) 605, 1131
BspMAI CTGCAG 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 1087
BsrBI CCGCTC 1 cut(s) 866
BsrDI GCAATG 1 cut(s) 697
BsrFI RCCGGY 2 cut(s) 411, 620
BsrI ACTGG 3 cut(s) 260, 368, 605
BssAI RCCGGY 2 cut(s) 411, 620
BssECI CCNNGG 4 cut(s) 334, 462, 813, 932
BssMI GATC 8 cut(s) 42, 159, 211, 421, 520, 891, 1215, 1221
BssT1I CCWWGG 3 cut(s) 334, 462, 932
Bst2UI CCWGG 2 cut(s) 1110, 1191
Bst4CI ACNGT 6 cut(s) 508, 589, 715, 809, 941, 1145
Bst6I CTCTTC 2 cut(s) 138, 178
BstBAI YACGTR 1 cut(s) 1206
BstC8I GCNNGC 1 cut(s) 497
BstDEI CTNAG 3 cut(s) 61, 1047, 1091
BstDSI CCRYGG 2 cut(s) 334, 462
BstF5I GGATG 5 cut(s) 319, 682, 745, 788, 1105
BstFNI CGCG 2 cut(s) 672, 1127
BstHHI GCGC 2 cut(s) 950, 1011
BstKTI GATC 8 cut(s) 45, 162, 214, 424, 523, 894, 1218, 1224
BstMAI GTCTC 7 cut(s) 258, 489, 514, 595, 727, 947, 1087
BstMBI GATC 8 cut(s) 42, 159, 211, 421, 520, 891, 1215, 1221
BstMCI CGRYCG 1 cut(s) 717
BstMWI GCNNNNNNNGC 1 cut(s) 1043
BstNI CCWGG 2 cut(s) 1110, 1191
BstNSI RCATGY 4 cut(s) 300, 954, 1009, 1123
BstSCI CCNGG 2 cut(s) 1108, 1189
BstSFI CTRYAG 2 cut(s) 144, 529
BstUI CGCG 2 cut(s) 672, 1127
BstV1I GCAGC 2 cut(s) 158, 1027
BstV2I GAAGAC 1 cut(s) 549
BsuRI GGCC 2 cut(s) 620, 931
BtgI CCRYGG 2 cut(s) 334, 462
BtrI CACGTC 1 cut(s) 1072
BtsCI GGATG 5 cut(s) 319, 682, 745, 788, 1105
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 1 cut(s) 497
CciI TCATGA 1 cut(s) 1218
CfoI GCGC 2 cut(s) 950, 1011
Cfr10I RCCGGY 2 cut(s) 411, 620
Cfr13I GGNCC 6 cut(s) 275, 603, 646, 1112, 1129, 1193
CsiI ACCWGGT 1 cut(s) 1189
Csp6I GTAC 6 cut(s) 810, 970, 1088, 1117, 1123, 1148
CspAI ACCGGT 1 cut(s) 411
CviAII CATG 8 cut(s) 297, 335, 463, 951, 958, 1006, 1120, 1219
CviQI GTAC 6 cut(s) 810, 970, 1088, 1117, 1123, 1148
DdeI CTNAG 3 cut(s) 61, 1047, 1091
DpnI GATC 8 cut(s) 44, 161, 213, 423, 522, 893, 1217, 1223
DpnII GATC 8 cut(s) 42, 159, 211, 421, 520, 891, 1215, 1221
DrdI GACNNNNNNGTC 2 cut(s) 1081, 1110
DseDI GACNNNNNNGTC 2 cut(s) 1081, 1110
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 138, 178
EarI CTCTTC 2 cut(s) 138, 178
EciI GGCGGA 1 cut(s) 320
Eco130I CCWWGG 3 cut(s) 334, 462, 932
Eco31I GGTCTC 1 cut(s) 1087
Eco47I GGWCC 6 cut(s) 275, 603, 646, 1112, 1129, 1193
Eco72I CACGTG 1 cut(s) 1206
EcoRI GAATTC 1 cut(s) 1158
EcoRII CCWGG 2 cut(s) 1108, 1189
EcoT14I CCWWGG 3 cut(s) 334, 462, 932
ErhI CCWWGG 3 cut(s) 334, 462, 932
Esp3I CGTCTC 2 cut(s) 258, 514
FaeI CATG 8 cut(s) 300, 338, 466, 954, 961, 1009, 1123, 1222
FaqI GGGAC 3 cut(s) 589, 744, 950
FatI CATG 8 cut(s) 296, 334, 462, 950, 957, 1005, 1119, 1218
FbaI TGATCA 2 cut(s) 159, 211
FblI GTMKAC 3 cut(s) 340, 1186, 1200
Fnu4HI GCNGC 5 cut(s) 147, 1038, 1041, 1044, 1235
FokI GGATG 5 cut(s) 326, 689, 732, 795, 1092
Fsp4HI GCNGC 5 cut(s) 147, 1038, 1041, 1044, 1235
FspBI CTAG 4 cut(s) 165, 443, 468, 513
FspI TGCGCA 1 cut(s) 1010
GlaI GCGC 2 cut(s) 949, 1010
GluI GCNGC 5 cut(s) 147, 1038, 1041, 1044, 1235
HaeIII GGCC 2 cut(s) 620, 931
HapII CCGG 4 cut(s) 351, 412, 621, 1151
HhaI GCGC 2 cut(s) 950, 1011
Hin1II CATG 8 cut(s) 300, 338, 466, 954, 961, 1009, 1123, 1222
Hin6I GCGC 2 cut(s) 948, 1009
HinP1I GCGC 2 cut(s) 948, 1009
HincII GTYRAC 1 cut(s) 1201
HindII GTYRAC 1 cut(s) 1201
HinfI GANTC 9 cut(s) 90, 140, 347, 399, 404, 458, 482, 572, 764
HpaII CCGG 4 cut(s) 351, 412, 621, 1151
HphI GGTGA 3 cut(s) 467, 901, 1063
Hpy166II GTNNAC 7 cut(s) 278, 341, 598, 757, 1148, 1187, 1201
Hpy188I TCNGA 4 cut(s) 36, 263, 321, 557
Hpy8I GTNNAC 7 cut(s) 278, 341, 598, 757, 1148, 1187, 1201
HpyAV CCTTC 5 cut(s) 917, 968, 973, 983, 1237
HpyCH4III ACNGT 6 cut(s) 508, 589, 715, 809, 941, 1145
HpyCH4IV ACGT 6 cut(s) 153, 582, 703, 857, 1071, 1205
HpyCH4V TGCA 4 cut(s) 146, 661, 745, 1177
HpyF10VI GCNNNNNNNGC 1 cut(s) 1043
HpyF3I CTNAG 3 cut(s) 61, 1047, 1091
HpySE526I ACGT 6 cut(s) 153, 582, 703, 857, 1071, 1205
Hsp92II CATG 8 cut(s) 300, 338, 466, 954, 961, 1009, 1123, 1222
HspAI GCGC 2 cut(s) 948, 1009
Ksp22I TGATCA 2 cut(s) 159, 211
Kzo9I GATC 8 cut(s) 42, 159, 211, 421, 520, 891, 1215, 1221
Lsp1109I GCAGC 2 cut(s) 158, 1027
LweI GCATC 2 cut(s) 448, 754
MabI ACCWGGT 1 cut(s) 1189
MaeI CTAG 4 cut(s) 165, 443, 468, 513
MaeII ACGT 6 cut(s) 153, 582, 703, 857, 1071, 1205
MaeIII GTNAC 5 cut(s) 573, 583, 803, 953, 1072
MalI GATC 8 cut(s) 44, 161, 213, 423, 522, 893, 1217, 1223
MbiI CCGCTC 1 cut(s) 866
MboI GATC 8 cut(s) 42, 159, 211, 421, 520, 891, 1215, 1221
MboII GAAGA 8 cut(s) 52, 125, 165, 171, 200, 203, 554, 570
MluCI AATT 4 cut(s) 322, 551, 1020, 1158
MlyI GAGTC 6 cut(s) 84, 134, 398, 491, 581, 773
MmeI TCCRAC 1 cut(s) 1047
MnlI CCTC 9 cut(s) 30, 124, 139, 808, 880, 1018, 1042, 1047, 1054
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 4 cut(s) 8, 99, 120, 1249
MslI CAYNNNNRTG 1 cut(s) 792
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 4 cut(s) 351, 412, 621, 1151
MspR9I CCNGG 2 cut(s) 1110, 1191
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 2 cut(s) 1110, 1191
MvnI CGCG 2 cut(s) 672, 1127
MwoI GCNNNNNNNGC 1 cut(s) 1043
NcoI CCATGG 2 cut(s) 334, 462
NdeII GATC 8 cut(s) 42, 159, 211, 421, 520, 891, 1215, 1221
NlaIII CATG 8 cut(s) 300, 338, 466, 954, 961, 1009, 1123, 1222
NlaIV GGNNCC 2 cut(s) 605, 1131
NmeAIII GCCGAG 1 cut(s) 924
NmuCI GTSAC 3 cut(s) 573, 583, 1072
NsbI TGCGCA 1 cut(s) 1010
NspI RCATGY 4 cut(s) 300, 954, 1009, 1123
PagI TCATGA 1 cut(s) 1218
PciI ACATGT 2 cut(s) 296, 1119
PctI GAATGC 1 cut(s) 389
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 3 cut(s) 347, 399, 458
Pfl23II CGTACG 1 cut(s) 969
PinAI ACCGGT 1 cut(s) 411
PkrI GCNGC 5 cut(s) 148, 1039, 1042, 1045, 1236
PleI GAGTC 6 cut(s) 84, 134, 398, 490, 580, 772
PmaCI CACGTG 1 cut(s) 1206
PmlI CACGTG 1 cut(s) 1206
PpsI GAGTC 6 cut(s) 84, 134, 398, 490, 580, 772
Ppu21I YACGTR 1 cut(s) 1206
PscI ACATGT 2 cut(s) 296, 1119
Psp1406I AACGTT 3 cut(s) 153, 703, 857
Psp6I CCWGG 2 cut(s) 1108, 1189
PspCI CACGTG 1 cut(s) 1206
PspGI CCWGG 2 cut(s) 1108, 1189
PspLI CGTACG 1 cut(s) 969
PspN4I GGNNCC 2 cut(s) 605, 1131
PspPI GGNCC 6 cut(s) 275, 603, 646, 1112, 1129, 1193
PstI CTGCAG 1 cut(s) 148
RsaI GTAC 6 cut(s) 811, 971, 1089, 1118, 1124, 1149
RsaNI GTAC 6 cut(s) 810, 970, 1088, 1117, 1123, 1148
RseI CAYNNNNRTG 1 cut(s) 792
SalI GTCGAC 1 cut(s) 1199
SaqAI TTAA 4 cut(s) 8, 99, 120, 1249
SatI GCNGC 5 cut(s) 147, 1038, 1041, 1044, 1235
Sau3AI GATC 8 cut(s) 42, 159, 211, 421, 520, 891, 1215, 1221
Sau96I GGNCC 6 cut(s) 275, 603, 646, 1112, 1129, 1193
SchI GAGTC 6 cut(s) 84, 134, 398, 491, 581, 773
ScrFI CCNGG 2 cut(s) 1110, 1191
SexAI ACCWGGT 1 cut(s) 1189
SfaNI GCATC 2 cut(s) 448, 754
SfcI CTRYAG 2 cut(s) 144, 529
SinI GGWCC 6 cut(s) 275, 603, 646, 1112, 1129, 1193
SmiMI CAYNNNNRTG 1 cut(s) 792
SmlI CTYRAG 2 cut(s) 183, 479
SmoI CTYRAG 2 cut(s) 183, 479
Sse9I AATT 4 cut(s) 322, 551, 1020, 1158
SsiI CCGC 8 cut(s) 331, 670, 752, 866, 1037, 1043, 1127, 1234
SspMI CTAG 4 cut(s) 165, 443, 468, 513
StyD4I CCNGG 2 cut(s) 1108, 1189
StyI CCWWGG 3 cut(s) 334, 462, 932
TaaI ACNGT 6 cut(s) 508, 589, 715, 809, 941, 1145
TaiI ACGT 6 cut(s) 156, 585, 706, 860, 1074, 1208
TaqI TCGA 6 cut(s) 88, 402, 407, 570, 1200, 1224
TasI AATT 4 cut(s) 322, 551, 1020, 1158
TauI GCSGC 3 cut(s) 1040, 1046, 1237
TfiI GAWTC 3 cut(s) 347, 399, 458
Tru1I TTAA 4 cut(s) 8, 99, 120, 1249
Tru9I TTAA 4 cut(s) 8, 99, 120, 1249
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 3 cut(s) 573, 583, 1072
TseI GCWGC 2 cut(s) 146, 1040
Tsp45I GTSAC 3 cut(s) 573, 583, 1072
TspDTI ATGAA 2 cut(s) 165, 240
TspGWI ACGGA 3 cut(s) 552, 1104, 1116
TspRI CASTG 1 cut(s) 592
VpaK11BI GGWCC 6 cut(s) 275, 603, 646, 1112, 1129, 1193
XapI RAATTY 2 cut(s) 551, 1158
XceI RCATGY 4 cut(s) 300, 954, 1009, 1123
XmiI GTMKAC 3 cut(s) 340, 1186, 1200
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 4 cut(s) 165, 443, 468, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.