Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011918

Physical Location & Seq

Genomic Coordinates Reverse (-)

32434793 .. 32437421

Gene Structure 2629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGGTAGTCCATTCAAAGACCATCAAATTCACTCTCCTTCTTATACTCGCTCTTTCATCAAGAAAATCTTACCTTATTTCATCTATGTCATACTTCCCATTGCTGTATTCCGCCTCTACCTTTACTCCCCCACTCTCCCTCAATCCTCCACACTCCATAACCACCTCCCTCAACCCTCCACAGTTCATCACCTCCCTCACTCCACCACCCCCATTTCCATAACCACTACAACACCATCATCATCTTCTTCATCTAAACATGAACAAGAACAGAAAAAACCAGAAGCTAAAGAACCTCAATGTGACTACACAGATGGAGACTGGCTCCCTGACAAAATGGGTCCTTTGTACAATGGCACAACCTGTGGCACAATCAAGAAAGGCCAGAACTGCATCACCCATGGGAGACCAGATTTGGGTTATCTCTACTGGAAATGGAAACCCAAGCAGTGCCATTTACCAAGGTTTGAACCCAACACTTTTCTCAACCTCCTTAGAAACAAGCACATAGCCTTTGTTGGTGACTCCATGGCCAGGAACCAATTGGAGTCCCTTCTTTGCATGCTAGCCACTGCCTCTCATCCCAAGCTTGTTTACACTGATGGTGAGGAAAACAAGTTTAGGAGGTGGAACTTTGCTTCTCACAATGTAAATGTGTCAGTTTATTGGTCACCTTTTCTTGTTAGAGGTGTTGAGAAATCAAAAACAGGGCCTGATCACAATCAATTGTATTTGGATCAAGTTGATGAGAGGTGGGCAGCTGATATGGGTAAGATGGACATGGTTGTGTTATCAGTGGGGCATTGGTTCTTGCATCCTGCAGTGTATTTTGAGGGTGGTTCAGCTCTAGGATGTCATTTCTGTCCTGGTTTGAATCACACTGAGATTGGGTTCTATGATGTTCTGAGAAAGGCCATAAAGACTACCCTGAAGACCATAACAGAAAGGAGAGGGTCTAGTGAGAATGGGATTAATGTGATTGTGACTACATTTTCACCTGCTCATTTTGAAGGTGAGTGGGACAAGGCTGGGGCTTGTCCCAAGATCAAACCTTACAATAAGGGAGAGAAAAATCTTGAAGGAATGGATGCTGATATGAGGCAAGTTGAGGTGGAAGAAGTGGAAGCTGCTAAGGTGAATGGTAAAGGGGTTTTAGGGTTTAAGGTTGAAGAATTGGATGTGACCTATTTGTCATTGATGAGGCCAGATGGGCACCCGGGGCCTTATATGCACCCATTTCCATTTGCTGATGGGGTTAAAGAGAGGGTGCAAAATGATTGTGTACATTGGTGTTTGCCTGGAGCTATTGACACATGGAATGAAATAATGCTGGAGATCATGAAGAAATGGAATCAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

454

Amino Acids

51.42

Weight (kDa)

7.33

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	100 - 152	1e-19	PMR5 N terminal Domain
PC-Esterase	PF13839	153 - 445	2.4e-92	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70230
fragaria_vesca	FvH4_4g34920
malus_domestica	MD13G1087900.v1.1 MD16G1088200.v1.1
prunus_persica	Prupe.1G258400_v2.0.a1
pyrus_communis	pycom13g07560 pycom16g07550
rosa_chinensis	RchiOBHm_Chr4g0444361
rosa_laevigata	RLG00000005837
rosa_multiflora	Rmu_sc0002841.1_g000009
rosa_roxburghii	Rroxscaffold_5G00384900
rosa_rugosa	Rorug04G0352100 Rorug04G0352200 Rorug04G0352200
rosa_samantha	Rh4AG412600 Rh4BG424100 Rh4CG438400 Rh4DG419300
rosa_wichuraiana	Rw4G035440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1006
AasI	GACNNNNNNGTC	1 cut(s)	1189
Acc36I	ACCTGC	1 cut(s)	1006
AccB1I	GGYRCC	1 cut(s)	1212
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	1 cut(s)	744
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	950
AfaI	GTAC	2 cut(s)	350, 1284
AfiI	CCNNNNNNNGG	2 cut(s)	416, 534
AgsI	TTSAA	6 cut(s)	16, 470, 874, 1010, 1079, 1169
AjnI	CCWGG	3 cut(s)	533, 865, 1297
AluBI	AGCT	6 cut(s)	287, 589, 761, 845, 1127, 1304
AluI	AGCT	6 cut(s)	287, 589, 761, 845, 1127, 1304
Alw26I	GTCTC	2 cut(s)	312, 400
AlwI	GGATC	1 cut(s)	744
AlwNI	CAGNNNCTG	1 cut(s)	713
Ama87I	CYCGRG	1 cut(s)	1216
AoxI	GGCC	6 cut(s)	382, 531, 710, 912, 1202, 1220
ApeKI	GCWGC	2 cut(s)	758, 1127
ApoI	RAATTY	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	972
AspS9I	GGNCC	3 cut(s)	341, 710, 1220
AsuC2I	CCSGG	2 cut(s)	1217, 1218
AsuHPI	GGTGA	8 cut(s)	182, 388, 533, 617, 663, 987, 1025, 1147
AsuNHI	GCTAGC	1 cut(s)	565
AvaI	CYCGRG	1 cut(s)	1216
AvaII	GGWCC	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	1215
BalI	TGGCCA	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	1212
BbsI	GAAGAC	1 cut(s)	938
BbvI	GCAGC	2 cut(s)	770, 1114
BccI	CCATC	7 cut(s)	30, 244, 308, 596, 769, 1202, 1244
BciT130I	CCWGG	3 cut(s)	535, 867, 1299
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	2 cut(s)	1217, 1218
BcoDI	GTCTC	2 cut(s)	312, 400
BfaI	CTAG	3 cut(s)	566, 848, 957
BfmI	CTRYAG	1 cut(s)	819
BfuAI	ACCTGC	1 cut(s)	1006
BglI	GCCNNNNNGGC	1 cut(s)	1210
BisI	GCNGC	2 cut(s)	759, 1128
BlsI	GCNGC	2 cut(s)	760, 1129
Bme1390I	CCNGG	5 cut(s)	535, 867, 1217, 1218, 1299
Bme18I	GGWCC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	1216
BmgT120I	GGNCC	3 cut(s)	341, 710, 1220
BmiI	GGNNCC	5 cut(s)	326, 342, 539, 1214, 1221
BmrFI	CCNGG	5 cut(s)	535, 867, 1217, 1218, 1299
BmsI	GCATC	3 cut(s)	402, 823, 1078
BmtI	GCTAGC	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	938
BplI	GAGNNNNNCTC	2 cut(s)	309, 341
BpmI	CTGGAG	2 cut(s)	1320, 1352
Bpu10I	CCTNAGC	1 cut(s)	1131
BpuMI	CCSGG	2 cut(s)	1217, 1218
BsaBI	GATNNNNATC	1 cut(s)	720
BsaI	GGTCTC	1 cut(s)	400
BsaJI	CCNNGG	5 cut(s)	400, 461, 528, 1216, 1217
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 534
Bse1I	ACTGG	2 cut(s)	326, 434
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	3 cut(s)	535, 867, 1299
BseDI	CCNNGG	5 cut(s)	400, 461, 528, 1216, 1217
BseGI	GGATG	5 cut(s)	580, 814, 857, 1093, 1183
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	2 cut(s)	416, 534
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	873, 896
BseNI	ACTGG	2 cut(s)	326, 434
BseSI	GKGCMC	1 cut(s)	1215
BseXI	GCAGC	2 cut(s)	770, 1114
BseYI	CCCAGC	1 cut(s)	1028
BshFI	GGCC	6 cut(s)	384, 533, 712, 914, 1204, 1222
BshNI	GGYRCC	1 cut(s)	1212
BsiHKCI	CYCGRG	1 cut(s)	1216
BsiSI	CCGG	1 cut(s)	1217
BslFI	GGGAC	3 cut(s)	535, 1023, 1034
BslI	CCNNNNNNNGG	2 cut(s)	416, 534
BsmAI	GTCTC	2 cut(s)	312, 400
BsmFI	GGGAC	3 cut(s)	535, 1023, 1034
BsnI	GGCC	6 cut(s)	384, 533, 712, 914, 1204, 1222
Bso31I	GGTCTC	1 cut(s)	400
BsoBI	CYCGRG	1 cut(s)	1216
Bsp1286I	GDGCHC	1 cut(s)	1215
Bsp1407I	TGTACA	2 cut(s)	348, 1282
Bsp143I	GATC	4 cut(s)	715, 736, 1044, 1335
Bsp19I	CCATGG	2 cut(s)	400, 528
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	6 cut(s)	384, 533, 712, 914, 1204, 1222
BspCNI	CTCAG	2 cut(s)	874, 897
BspHI	TCATGA	1 cut(s)	1338
BspLI	GGNNCC	5 cut(s)	326, 342, 539, 1214, 1221
BspMAI	CTGCAG	1 cut(s)	823
BspMI	ACCTGC	1 cut(s)	1006
BspOI	GCTAGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	744
BspT107I	GGYRCC	1 cut(s)	1212
BspTNI	GGTCTC	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	99
BsrGI	TGTACA	2 cut(s)	348, 1282
BsrI	ACTGG	2 cut(s)	326, 434
BssECI	CCNNGG	5 cut(s)	400, 461, 528, 1216, 1217
BssMI	GATC	4 cut(s)	715, 736, 1044, 1335
BssT1I	CCWWGG	3 cut(s)	400, 461, 528
Bst2UI	CCWGG	3 cut(s)	535, 867, 1299
Bst4CI	ACNGT	1 cut(s)	184
BstAUI	TGTACA	2 cut(s)	348, 1282
BstC8I	GCNNGC	2 cut(s)	563, 567
BstDEI	CTNAG	4 cut(s)	494, 882, 905, 1131
BstDSI	CCRYGG	2 cut(s)	400, 528
BstEII	GGTNACC	1 cut(s)	669
BstF5I	GGATG	5 cut(s)	580, 814, 857, 1093, 1183
BstKTI	GATC	4 cut(s)	718, 739, 1047, 1338
BstMAI	GTCTC	2 cut(s)	312, 400
BstMBI	GATC	4 cut(s)	715, 736, 1044, 1335
BstMWI	GCNNNNNNNGC	4 cut(s)	390, 1210, 1219, 1228
BstNI	CCWGG	3 cut(s)	535, 867, 1299
BstNSI	RCATGY	1 cut(s)	565
BstPI	GGTNACC	1 cut(s)	669
BstSCI	CCNGG	5 cut(s)	533, 865, 1215, 1216, 1297
BstSFI	CTRYAG	1 cut(s)	819
BstSLI	GKGCMC	1 cut(s)	1215
BstV1I	GCAGC	2 cut(s)	770, 1114
BstV2I	GAAGAC	1 cut(s)	938
BsuRI	GGCC	6 cut(s)	384, 533, 712, 914, 1204, 1222
BtgI	CCRYGG	2 cut(s)	400, 528
BtsCI	GGATG	5 cut(s)	580, 814, 857, 1093, 1183
BtsI	GCAGTG	3 cut(s)	455, 570, 828
BtsIMutI	CAGTG	6 cut(s)	455, 570, 597, 801, 828, 879
BveI	ACCTGC	1 cut(s)	1006
Cac8I	GCNNGC	2 cut(s)	563, 567
CaiI	CAGNNNCTG	1 cut(s)	713
CciI	TCATGA	1 cut(s)	1338
Cfr13I	GGNCC	3 cut(s)	341, 710, 1220
Cfr9I	CCCGGG	1 cut(s)	1216
Csp6I	GTAC	2 cut(s)	349, 1283
CviAII	CATG	7 cut(s)	260, 401, 529, 562, 781, 1314, 1339
CviQI	GTAC	2 cut(s)	349, 1283
DdeI	CTNAG	4 cut(s)	494, 882, 905, 1131
DpnI	GATC	4 cut(s)	717, 738, 1046, 1337
DpnII	GATC	4 cut(s)	715, 736, 1044, 1335
DrdI	GACNNNNNNGTC	1 cut(s)	1189
DseDI	GACNNNNNNGTC	1 cut(s)	1189
EaeI	YGGCCR	1 cut(s)	531
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	3 cut(s)	400, 461, 528
Eco31I	GGTCTC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	950
Eco88I	CYCGRG	1 cut(s)	1216
Eco91I	GGTNACC	1 cut(s)	669
EcoO109I	RGGNCCY	3 cut(s)	341, 710, 1220
EcoO65I	GGTNACC	1 cut(s)	669
EcoRII	CCWGG	3 cut(s)	533, 865, 1297
EcoT14I	CCWWGG	3 cut(s)	400, 461, 528
ErhI	CCWWGG	3 cut(s)	400, 461, 528
FaeI	CATG	7 cut(s)	263, 404, 532, 565, 784, 1317, 1342
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	3 cut(s)	535, 1023, 1034
FatI	CATG	7 cut(s)	259, 400, 528, 561, 780, 1313, 1338
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	2 cut(s)	759, 1128
FokI	GGATG	5 cut(s)	567, 801, 864, 1100, 1190
Fsp4HI	GCNGC	2 cut(s)	759, 1128
FspBI	CTAG	3 cut(s)	566, 848, 957
GluI	GCNGC	2 cut(s)	759, 1128
GsaI	CCCAGC	1 cut(s)	1032
GsuI	CTGGAG	2 cut(s)	1320, 1352
HaeIII	GGCC	6 cut(s)	384, 533, 712, 914, 1204, 1222
HapII	CCGG	1 cut(s)	1217
Hin1II	CATG	7 cut(s)	263, 404, 532, 565, 784, 1317, 1342
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	4 cut(s)	524, 548, 874, 1351
HpaII	CCGG	1 cut(s)	1217
HphI	GGTGA	8 cut(s)	182, 388, 533, 617, 663, 987, 1025, 1147
Hpy166II	GTNNAC	2 cut(s)	595, 1283
Hpy188I	TCNGA	1 cut(s)	906
Hpy188III	TCNNGA	4 cut(s)	61, 376, 1076, 1339
Hpy8I	GTNNAC	2 cut(s)	595, 1283
HpyAV	CCTTC	4 cut(s)	48, 563, 1004, 1073
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	6 cut(s)	393, 561, 814, 821, 1231, 1270
HpyF10VI	GCNNNNNNNGC	4 cut(s)	390, 1210, 1219, 1228
HpyF3I	CTNAG	4 cut(s)	494, 882, 905, 1131
Hsp92II	CATG	7 cut(s)	263, 404, 532, 565, 784, 1317, 1342
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	4 cut(s)	715, 736, 1044, 1335
LmnI	GCTCC	2 cut(s)	330, 1301
Lsp1109I	GCAGC	2 cut(s)	770, 1114
LweI	GCATC	3 cut(s)	402, 823, 1078
MaeI	CTAG	3 cut(s)	566, 848, 957
MaeIII	GTNAC	5 cut(s)	302, 521, 669, 982, 1180
MalI	GATC	4 cut(s)	717, 738, 1046, 1337
MboI	GATC	4 cut(s)	715, 736, 1044, 1335
MboII	GAAGA	6 cut(s)	237, 240, 943, 1127, 1181, 1354
MfeI	CAATTG	2 cut(s)	542, 725
MhlI	GDGCHC	1 cut(s)	1215
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	4 cut(s)	27, 542, 725, 1172
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	2 cut(s)	518, 557
Mox20I	TGGCCA	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	3 cut(s)	972, 1161, 1257
MslI	CAYNNNNRTG	1 cut(s)	785
Msp20I	TGGCCA	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	1 cut(s)	1217
MspR9I	CCNGG	5 cut(s)	535, 867, 1217, 1218, 1299
MunI	CAATTG	2 cut(s)	542, 725
MvaI	CCWGG	3 cut(s)	535, 867, 1299
MwoI	GCNNNNNNNGC	4 cut(s)	390, 1210, 1219, 1228
NciI	CCSGG	2 cut(s)	1217, 1218
NcoI	CCATGG	2 cut(s)	400, 528
NdeII	GATC	4 cut(s)	715, 736, 1044, 1335
NheI	GCTAGC	1 cut(s)	565
NlaIII	CATG	7 cut(s)	263, 404, 532, 565, 784, 1317, 1342
NlaIV	GGNNCC	5 cut(s)	326, 342, 539, 1214, 1221
NmuCI	GTSAC	5 cut(s)	302, 521, 669, 982, 1180
NspI	RCATGY	1 cut(s)	565
PaeI	GCATGC	1 cut(s)	565
PagI	TCATGA	1 cut(s)	1338
PaqCI	CACCTGC	1 cut(s)	1006
PfeI	GAWTC	2 cut(s)	874, 1351
PkrI	GCNGC	2 cut(s)	760, 1129
PleI	GAGTC	2 cut(s)	518, 556
PpsI	GAGTC	2 cut(s)	518, 556
PpuMI	RGGWCCY	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	972
Psp5II	RGGWCCY	1 cut(s)	341
Psp6I	CCWGG	3 cut(s)	533, 865, 1297
PspEI	GGTNACC	1 cut(s)	669
PspFI	CCCAGC	1 cut(s)	1028
PspGI	CCWGG	3 cut(s)	533, 865, 1297
PspN4I	GGNNCC	5 cut(s)	326, 342, 539, 1214, 1221
PspPI	GGNCC	3 cut(s)	341, 710, 1220
PspPPI	RGGWCCY	1 cut(s)	341
PstI	CTGCAG	1 cut(s)	823
PstNI	CAGNNNCTG	1 cut(s)	713
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	2 cut(s)	350, 1284
RsaNI	GTAC	2 cut(s)	349, 1283
RseI	CAYNNNNRTG	1 cut(s)	785
SaqAI	TTAA	3 cut(s)	972, 1161, 1257
SatI	GCNGC	2 cut(s)	759, 1128
Sau3AI	GATC	4 cut(s)	715, 736, 1044, 1335
Sau96I	GGNCC	3 cut(s)	341, 710, 1220
SchI	GAGTC	2 cut(s)	518, 557
ScrFI	CCNGG	5 cut(s)	535, 867, 1217, 1218, 1299
SduI	GDGCHC	1 cut(s)	1215
SfaNI	GCATC	3 cut(s)	402, 823, 1078
SfcI	CTRYAG	1 cut(s)	819
SinI	GGWCC	1 cut(s)	341
SmaI	CCCGGG	1 cut(s)	1218
SmiMI	CAYNNNNRTG	1 cut(s)	785
SphI	GCATGC	1 cut(s)	565
Sse9I	AATT	4 cut(s)	27, 542, 725, 1172
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	3 cut(s)	566, 848, 957
StyD4I	CCNGG	5 cut(s)	533, 865, 1215, 1216, 1297
StyI	CCWWGG	3 cut(s)	400, 461, 528
TaaI	ACNGT	1 cut(s)	184
TasI	AATT	4 cut(s)	27, 542, 725, 1172
TatI	WGTACW	2 cut(s)	348, 1282
TfiI	GAWTC	2 cut(s)	874, 1351
Tru1I	TTAA	3 cut(s)	972, 1161, 1257
Tru9I	TTAA	3 cut(s)	972, 1161, 1257
TscAI	CASTG	6 cut(s)	455, 577, 604, 801, 828, 886
TseFI	GTSAC	5 cut(s)	302, 521, 669, 982, 1180
TseI	GCWGC	2 cut(s)	758, 1127
Tsp45I	GTSAC	5 cut(s)	302, 521, 669, 982, 1180
TspDTI	ATGAA	7 cut(s)	46, 70, 176, 240, 276, 1335, 1355
TspMI	CCCGGG	1 cut(s)	1216
TspRI	CASTG	6 cut(s)	455, 577, 604, 801, 828, 886
VpaK11BI	GGWCC	1 cut(s)	341
VspI	ATTAAT	1 cut(s)	972
XapI	RAATTY	1 cut(s)	27
XceI	RCATGY	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XmaI	CCCGGG	1 cut(s)	1216
XspI	CTAG	3 cut(s)	566, 848, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.