Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011918

Physical Location & Seq

Genomic Coordinates Forward (+)

6167640 .. 6170055

Gene Structure 2416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1087900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGGAACAACAACAAGCCCTTTCAAAGACCAATATCATCACTCATCATCTCTTGCCAAAAAGCTCTTGCCTTATGCAATCTATGTCCTCCTCCCCATTGCTGTAATCCGCTTGTACTTATACACTCCCTCTCTCTCTCTCTCCTCCACAGATCACCTCCCTCACTCCACTGAAATTACCATCTCAACCTCCTCCTCCTCTTATTCTTCCTCTCCTTCCCCATTGCCCCCCATTTCCTCCTCTCAAGAAGAGGAAAGGGCTAAAGAAACTACACCTTCATGTGACTACACTAGGGGCAAATGGGTCCATGAGAAGCTGGGCCCTTTGTACAATGGCACAACCTGTGGGACAATCAAGGAAGGTCAGAACTGCATCACCCATGGAAGAACTGATTTGGGTTATCTCTACTGGAGGTGGAAACCTAGCAAGTGCCAGCTCCCCAGGTTTGAACCCAGCACTTTTCTTCATCTTATTAAGAACAAGCACATAGCTTTTGTGGGGGACTCCATGGCCAGGAACCAGTTGGAGTCCCTCCTCTGCATGCTTGCCACTGCCTCTCCTCCCAACCTTGTTTACACAGATGGGGAGGAGAACAAGTTTAGGAGATGGAATTTTCCATCCCACAATGCCAATGTGTCAGTTTATTGGTCACCATTTCTTGTGAAAGGGGTTGAGAAATCACCAAATGGTCCAAATTATAATAAATTGTATTTGGATCAAGTGAATGAGAGGTGGGCTGCGGAGTTGGGGGGATTTGATATGGTTGTGTTGTCAGTTGGGCATTGGTTTTTGCACCCAGCAGTGTATTTTGAGGGGGATGATGTTCTGGGGTGCCATTTTTGCCCTGGATTAAACCACACTGAGATTGAATTCTATGATGTGTTGAGGAAAGCTGTGAGGACTACTCTCAAAACCATAATTGAGAGGAGAGGGAATGGGAGTGGGATTGATGTGGTTCTGACGACGTTTTCGCCTGCGCATTTTGAAGGGGAATGGGACAAGAATGGGGCTTGTTCAAAGACCAAACCCTACAAGGAGGGTGAGAAGCAGCTTGAAGGAATGGATGCTGAGATGAGGCAGCTGGAGGTGGAAGAAGTAGAGGCTGCTAGGGCAAATGGTGAGAAATTTGTAGGGTTTAGGTTGGAGGCATTGGATGTGACTAAATTGTCCATGATGAGGCCAGATGGGCATCCAGGGCCTTACATGAATAAGTTTCCATTTGCTGATGGGGTTCCTGAGAGGGTGCAGAATGATTGTGTGCATTGGTGCTTGCCAGGGCCTATTGACACATGGAATGAGATTCTGCTGGAGGTCATGAAGAAATGGAATCAGGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

447

Amino Acids

50.41

Weight (kDa)

6.36

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	93 - 145	3.6e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	146 - 437	1.9e-94	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70230
fragaria_vesca	FvH4_4g34920
malus_domestica	MD13G1087900.v1.1 MD16G1088200.v1.1
prunus_persica	Prupe.1G258400_v2.0.a1
pyrus_communis	pycom13g07560 pycom16g07550
rosa_chinensis	RchiOBHm_Chr4g0444361
rosa_laevigata	RLG00000005837
rosa_multiflora	Rmu_sc0002841.1_g000009
rosa_roxburghii	Rroxscaffold_5G00384900
rosa_rugosa	Rorug04G0352100 Rorug04G0352200 Rorug04G0352200
rosa_samantha	Rh4AG412600 Rh4BG424100 Rh4CG438400 Rh4DG419300
rosa_wichuraiana	Rw4G035440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	699
AasI	GACNNNNNNGTC	1 cut(s)	1165
Acc16I	TGCGCA	1 cut(s)	978
AccB1I	GGYRCC	1 cut(s)	831
AciI	CCGC	2 cut(s)	109, 740
AclWI	GGATC	1 cut(s)	723
AcoI	YGGCCR	1 cut(s)	510
AcsI	RAATTY	3 cut(s)	610, 869, 1124
AfaI	GTAC	2 cut(s)	116, 329
AfiI	CCNNNNNNNGG	2 cut(s)	513, 1176
AgsI	TTSAA	6 cut(s)	25, 449, 869, 986, 1017, 1055
AjnI	CCWGG	5 cut(s)	440, 512, 844, 1192, 1273
AluBI	AGCT	7 cut(s)	64, 316, 436, 491, 893, 1051, 1081
AluI	AGCT	7 cut(s)	64, 316, 436, 491, 893, 1051, 1081
AlwI	GGATC	1 cut(s)	723
AoxI	GGCC	5 cut(s)	319, 510, 1178, 1196, 1277
ApaI	GGGCCC	1 cut(s)	323
ApeKI	GCWGC	4 cut(s)	737, 1048, 1078, 1103
ApoI	RAATTY	3 cut(s)	610, 869, 1124
ArsI	GACNNNNNNTTYG	2 cut(s)	952, 984
AspLEI	GCGC	1 cut(s)	979
AspS9I	GGNCC	6 cut(s)	304, 319, 320, 689, 1196, 1277
AsuHPI	GGTGA	6 cut(s)	146, 367, 642, 672, 1052, 1130
AvaII	GGWCC	2 cut(s)	304, 689
BaeGI	GKGCMC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	831
BanII	GRGCYC	1 cut(s)	323
BbvI	GCAGC	4 cut(s)	724, 1060, 1090, 1090
BccI	CCATC	6 cut(s)	188, 575, 600, 625, 1178, 1220
BciT130I	CCWGG	5 cut(s)	442, 514, 846, 1194, 1275
BfaI	CTAG	3 cut(s)	291, 423, 1107
BglI	GCCNNNNNGGC	1 cut(s)	1186
BisI	GCNGC	4 cut(s)	738, 1049, 1079, 1104
BlsI	GCNGC	4 cut(s)	739, 1050, 1080, 1105
Bme1390I	CCNGG	5 cut(s)	442, 514, 846, 1194, 1275
Bme18I	GGWCC	2 cut(s)	304, 689
BmgT120I	GGNCC	6 cut(s)	304, 319, 320, 689, 1196, 1277
BmiI	GGNNCC	5 cut(s)	305, 321, 518, 833, 1233
BmrFI	CCNGG	5 cut(s)	442, 514, 846, 1194, 1275
BmsI	GCATC	3 cut(s)	381, 1054, 1198
BplI	GAGNNNNNCTC	2 cut(s)	889, 921
BpmI	CTGGAG	3 cut(s)	430, 1103, 1328
BpuEI	CTTGAG	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	1188
BsaJI	CCNNGG	6 cut(s)	379, 440, 507, 844, 1193, 1274
BsaXI	ACNNNNNCTCC	4 cut(s)	541, 571, 581, 611
Bsc4I	CCNNNNNNNGG	2 cut(s)	513, 1176
Bse1I	ACTGG	2 cut(s)	413, 520
Bse3DI	GCAATG	2 cut(s)	96, 221
Bse8I	GATNNNNATC	1 cut(s)	1188
BseBI	CCWGG	5 cut(s)	442, 514, 846, 1194, 1275
BseDI	CCNNGG	6 cut(s)	379, 440, 507, 844, 1193, 1274
BseGI	GGATG	5 cut(s)	617, 823, 1069, 1159, 1189
BseJI	GATNNNNATC	1 cut(s)	1188
BseLI	CCNNNNNNNGG	2 cut(s)	513, 1176
BseMI	GCAATG	2 cut(s)	96, 221
BseMII	CTCAG	3 cut(s)	852, 1059, 1227
BseNI	ACTGG	2 cut(s)	413, 520
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	4 cut(s)	724, 1060, 1090, 1090
BseYI	CCCAGC	3 cut(s)	316, 452, 796
BsgI	GTGCAG	1 cut(s)	1265
BshFI	GGCC	5 cut(s)	321, 512, 1180, 1198, 1279
BshNI	GGYRCC	1 cut(s)	831
BslFI	GGGAC	4 cut(s)	361, 514, 515, 1010
BslI	CCNNNNNNNGG	2 cut(s)	513, 1176
BsmFI	GGGAC	4 cut(s)	361, 514, 515, 1010
BsnI	GGCC	5 cut(s)	321, 512, 1180, 1198, 1279
Bsp120I	GGGCCC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	151, 715
Bsp19I	CCATGG	2 cut(s)	379, 507
BspACI	CCGC	2 cut(s)	109, 740
BspANI	GGCC	5 cut(s)	321, 512, 1180, 1198, 1279
BspCNI	CTCAG	3 cut(s)	853, 1060, 1228
BspHI	TCATGA	1 cut(s)	1314
BspLI	GGNNCC	5 cut(s)	305, 321, 518, 833, 1233
BspPI	GGATC	1 cut(s)	723
BspT107I	GGYRCC	1 cut(s)	831
BsrDI	GCAATG	2 cut(s)	96, 221
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	413, 520
BssECI	CCNNGG	6 cut(s)	379, 440, 507, 844, 1193, 1274
BssMI	GATC	2 cut(s)	151, 715
BssT1I	CCWWGG	2 cut(s)	379, 507
Bst2UI	CCWGG	5 cut(s)	442, 514, 846, 1194, 1275
Bst6I	CTCTTC	1 cut(s)	243
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	5 cut(s)	434, 542, 546, 975, 1271
BstDEI	CTNAG	3 cut(s)	861, 1068, 1236
BstDSI	CCRYGG	2 cut(s)	379, 507
BstEII	GGTNACC	1 cut(s)	648
BstF5I	GGATG	5 cut(s)	617, 823, 1069, 1159, 1189
BstHHI	GCGC	1 cut(s)	979
BstKTI	GATC	2 cut(s)	154, 718
BstMBI	GATC	2 cut(s)	151, 715
BstMWI	GCNNNNNNNGC	4 cut(s)	840, 1109, 1186, 1195
BstNI	CCWGG	5 cut(s)	442, 514, 846, 1194, 1275
BstNSI	RCATGY	1 cut(s)	544
BstPI	GGTNACC	1 cut(s)	648
BstSCI	CCNGG	5 cut(s)	440, 512, 844, 1192, 1273
BstSLI	GKGCMC	1 cut(s)	323
BstV1I	GCAGC	4 cut(s)	724, 1060, 1090, 1090
BsuRI	GGCC	5 cut(s)	321, 512, 1180, 1198, 1279
BtgI	CCRYGG	2 cut(s)	379, 507
BtsCI	GGATG	5 cut(s)	617, 823, 1069, 1159, 1189
BtsI	GCAGTG	2 cut(s)	549, 807
BtsIMutI	CAGTG	4 cut(s)	168, 549, 807, 858
Cac8I	GCNNGC	5 cut(s)	434, 542, 546, 975, 1271
CciI	TCATGA	1 cut(s)	1314
CfoI	GCGC	1 cut(s)	979
Cfr13I	GGNCC	6 cut(s)	304, 319, 320, 689, 1196, 1277
Csp6I	GTAC	2 cut(s)	115, 328
CviAII	CATG	9 cut(s)	279, 308, 380, 508, 541, 1171, 1204, 1290, 1315
CviQI	GTAC	2 cut(s)	115, 328
DdeI	CTNAG	3 cut(s)	861, 1068, 1236
DpnI	GATC	2 cut(s)	153, 717
DpnII	GATC	2 cut(s)	151, 715
DrdI	GACNNNNNNGTC	1 cut(s)	1165
DseDI	GACNNNNNNGTC	1 cut(s)	1165
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	379, 507
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	304, 689
Eco91I	GGTNACC	1 cut(s)	648
EcoO109I	RGGNCCY	3 cut(s)	320, 1196, 1277
EcoO65I	GGTNACC	1 cut(s)	648
EcoRI	GAATTC	1 cut(s)	869
EcoRII	CCWGG	5 cut(s)	440, 512, 844, 1192, 1273
EcoT14I	CCWWGG	2 cut(s)	379, 507
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	2 cut(s)	379, 507
FaeI	CATG	9 cut(s)	282, 311, 383, 511, 544, 1174, 1207, 1293, 1318
FaqI	GGGAC	4 cut(s)	361, 514, 515, 1010
FatI	CATG	9 cut(s)	278, 307, 379, 507, 540, 1170, 1203, 1289, 1314
Fnu4HI	GCNGC	4 cut(s)	738, 1049, 1079, 1104
FokI	GGATG	5 cut(s)	604, 830, 1076, 1166, 1176
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	4 cut(s)	738, 1049, 1079, 1104
FspBI	CTAG	3 cut(s)	291, 423, 1107
FspI	TGCGCA	1 cut(s)	978
GlaI	GCGC	1 cut(s)	978
GluI	GCNGC	4 cut(s)	738, 1049, 1079, 1104
GsaI	CCCAGC	3 cut(s)	320, 456, 800
GsuI	CTGGAG	3 cut(s)	430, 1103, 1328
HaeIII	GGCC	5 cut(s)	321, 512, 1180, 1198, 1279
HhaI	GCGC	1 cut(s)	979
Hin1II	CATG	9 cut(s)	282, 311, 383, 511, 544, 1174, 1207, 1293, 1318
Hin6I	GCGC	1 cut(s)	977
HinP1I	GCGC	1 cut(s)	977
HinfI	GANTC	4 cut(s)	503, 527, 1300, 1327
HphI	GGTGA	6 cut(s)	146, 367, 642, 672, 1052, 1130
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	2 cut(s)	366, 960
Hpy188III	TCNNGA	3 cut(s)	245, 1235, 1315
Hpy8I	GTNNAC	1 cut(s)	574
Hpy99I	CGWCG	1 cut(s)	967
HpyAV	CCTTC	5 cut(s)	225, 285, 353, 980, 1049
HpyCH4IV	ACGT	1 cut(s)	965
HpyCH4V	TGCA	6 cut(s)	77, 372, 540, 793, 1246, 1261
HpyF10VI	GCNNNNNNNGC	4 cut(s)	840, 1109, 1186, 1195
HpyF3I	CTNAG	3 cut(s)	861, 1068, 1236
HpySE526I	ACGT	1 cut(s)	965
Hsp92II	CATG	9 cut(s)	282, 311, 383, 511, 544, 1174, 1207, 1293, 1318
HspAI	GCGC	1 cut(s)	977
Kzo9I	GATC	2 cut(s)	151, 715
LmnI	GCTCC	1 cut(s)	441
Lsp1109I	GCAGC	4 cut(s)	724, 1060, 1090, 1090
LweI	GCATC	3 cut(s)	381, 1054, 1198
MaeI	CTAG	3 cut(s)	291, 423, 1107
MaeII	ACGT	1 cut(s)	965
MaeIII	GTNAC	3 cut(s)	281, 648, 1156
MalI	GATC	2 cut(s)	153, 717
MboI	GATC	2 cut(s)	151, 715
MboII	GAAGA	6 cut(s)	198, 260, 396, 455, 1103, 1330
MhlI	GDGCHC	1 cut(s)	323
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	8 cut(s)	174, 610, 694, 704, 869, 918, 1124, 1163
MluNI	TGGCCA	1 cut(s)	512
MlyI	GAGTC	2 cut(s)	497, 536
MmeI	TCCRAC	2 cut(s)	504, 1122
Mox20I	TGGCCA	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	512
MseI	TTAA	2 cut(s)	474, 851
MslI	CAYNNNNRTG	1 cut(s)	277
Msp20I	TGGCCA	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	1081
MspR9I	CCNGG	5 cut(s)	442, 514, 846, 1194, 1275
MvaI	CCWGG	5 cut(s)	442, 514, 846, 1194, 1275
MwoI	GCNNNNNNNGC	4 cut(s)	840, 1109, 1186, 1195
NcoI	CCATGG	2 cut(s)	379, 507
NdeII	GATC	2 cut(s)	151, 715
NlaIII	CATG	9 cut(s)	282, 311, 383, 511, 544, 1174, 1207, 1293, 1318
NlaIV	GGNNCC	5 cut(s)	305, 321, 518, 833, 1233
NmuCI	GTSAC	3 cut(s)	281, 648, 1156
NsbI	TGCGCA	1 cut(s)	978
NspI	RCATGY	1 cut(s)	544
PaeI	GCATGC	1 cut(s)	544
PagI	TCATGA	1 cut(s)	1314
PfeI	GAWTC	2 cut(s)	1300, 1327
PkrI	GCNGC	4 cut(s)	739, 1050, 1080, 1105
PleI	GAGTC	2 cut(s)	497, 535
PpsI	GAGTC	2 cut(s)	497, 535
PsiI	TTATAA	1 cut(s)	699
Psp6I	CCWGG	5 cut(s)	440, 512, 844, 1192, 1273
PspEI	GGTNACC	1 cut(s)	648
PspFI	CCCAGC	3 cut(s)	316, 452, 796
PspGI	CCWGG	5 cut(s)	440, 512, 844, 1192, 1273
PspN4I	GGNNCC	5 cut(s)	305, 321, 518, 833, 1233
PspOMI	GGGCCC	1 cut(s)	319
PspPI	GGNCC	6 cut(s)	304, 319, 320, 689, 1196, 1277
PvuII	CAGCTG	1 cut(s)	1081
RsaI	GTAC	2 cut(s)	116, 329
RsaNI	GTAC	2 cut(s)	115, 328
RseI	CAYNNNNRTG	1 cut(s)	277
SaqAI	TTAA	2 cut(s)	474, 851
SatI	GCNGC	4 cut(s)	738, 1049, 1079, 1104
Sau3AI	GATC	2 cut(s)	151, 715
Sau96I	GGNCC	6 cut(s)	304, 319, 320, 689, 1196, 1277
SchI	GAGTC	2 cut(s)	497, 536
ScrFI	CCNGG	5 cut(s)	442, 514, 846, 1194, 1275
SduI	GDGCHC	1 cut(s)	323
SfaNI	GCATC	3 cut(s)	381, 1054, 1198
SinI	GGWCC	2 cut(s)	304, 689
SmiMI	CAYNNNNRTG	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	544
Sse9I	AATT	8 cut(s)	174, 610, 694, 704, 869, 918, 1124, 1163
SsiI	CCGC	2 cut(s)	109, 740
SspMI	CTAG	3 cut(s)	291, 423, 1107
StyD4I	CCNGG	5 cut(s)	440, 512, 844, 1192, 1273
StyI	CCWWGG	2 cut(s)	379, 507
TaiI	ACGT	1 cut(s)	968
TasI	AATT	8 cut(s)	174, 610, 694, 704, 869, 918, 1124, 1163
TatI	WGTACW	2 cut(s)	114, 327
TfiI	GAWTC	2 cut(s)	1300, 1327
Tru1I	TTAA	2 cut(s)	474, 851
Tru9I	TTAA	2 cut(s)	474, 851
TscAI	CASTG	4 cut(s)	175, 556, 807, 865
TseFI	GTSAC	3 cut(s)	281, 648, 1156
TseI	GCWGC	4 cut(s)	737, 1048, 1078, 1103
Tsp45I	GTSAC	3 cut(s)	281, 648, 1156
TspDTI	ATGAA	4 cut(s)	267, 455, 1220, 1331
TspRI	CASTG	4 cut(s)	175, 556, 807, 865
VpaK11BI	GGWCC	2 cut(s)	304, 689
XapI	RAATTY	3 cut(s)	610, 869, 1124
XceI	RCATGY	1 cut(s)	544
XcmI	CCANNNNNNNNNTGG	2 cut(s)	520, 842
XspI	CTAG	3 cut(s)	291, 423, 1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.