Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011918

Physical Location & Seq

Genomic Coordinates Reverse (-)

64106634 .. 64109099

Gene Structure 2466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGTTAGTCCATTCAAAGACCACCAATCTCACTCTGCATCTTACACTCACTCCTTCATCAAGAAAATCTTACCTTATTTCATCTATGTCATACTTCCCATTGCTGTAATCCGCCTCTACCTTTACTCCCCCACTCTCCCTCAATCCTCCACAGTTCACTTTCACCTCCCTCAACCCTCCACAGTTCATCACCTCCCTCACTCCACCACCCCCATTTCCATAACCACTCCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACATGAAGAAGAAGAGAAGAAACCAGAAGCTAAAGAAACTCAATGTGACTTCACAGATGGGAACTGGGTCCCTGACAAAATGGGTCCTTTGTACAATGGCACAACCTGTGGGACAATTAAGGAAGGCCAGAATTGCATCACCCATGGGAGATCAGATTTGGGTTATCTCTACTGGAAATGGAAACCCAAGCAGTGCCCTTTACCAAGGTTTGAACCCAACACTTTTCTCCACCTCCTTAGAAACAAGCACATAGCTTTTGTCGGTGACTCCATGGCCAGGAACCAATTGGAGTCCCTTCTTTGCATGCTAGCCACTGCCTCTCCTCCCAAACTTGTTTACACTGATGGTGAGGACAACAAGTTTAGGAGGTGGAACTTTGCTTCTCACAATGTCAATGTGTCAGTGTATTGGTCACCTTTTCTTGTTAAAGGTGTTGAGAAATCAAAATCAGGGCCTGATCACAATGAATTGTATTTGGATCAAGTTGATGAGAGGTGGGCAGCTGATATGGGTAAGATGGACATGGTTGTGTTATCAGTTGGGCATTGGTTTTTGCATCCTGCTGTGTATTTTGAGGGTGGTTCAGCTCTTGGGTGTCATTTCTGTCCTGGTCTGAATCACACTGAGATTGGCTTCTATGATGTTCTGAGAAAGGCCGTAAGGACTACCCTAAAGACCATAACTGAAAGGAGAGGGACTAGTGAGAATGGGATCAATGTAATTGTGACTACATTTTCACCAGCTCATTTTGAAGGTGAGTGGGACAAGGCTGGGGCTTGTCCCAAGACCAAGCCTTACAACAAGGGAGAGAAAAATCTTCAAGGAATGGATGCTGAGATGAGGCAAGTTGAGGTGGAAGAAGTGGAAGCTGCTAAGGTGAATGGTAAAGGGTTTTCAGGGTTTAAGGTTGAAGAATTGGATGTGAGCTATTTGTCACTGATGAGGCCAGATGGGCACCCTGGGCCTTATATGAACCCTTTTCCATTTTTTAATGGGGTGAAAGAGAGGGTGCAAAATGATTGTGTACATTGGTGTTTGCCTGGGGCTATTGACACATGGAATGAGATATTGCTGGAGATCATGAAGAAATGGAATCGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

456

Amino Acids

51.52

Weight (kDa)

6.72

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	103 - 154	3.4e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	156 - 448	2.2e-92	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70230
fragaria_vesca	FvH4_4g34920
malus_domestica	MD13G1087900.v1.1 MD16G1088200.v1.1
prunus_persica	Prupe.1G258400_v2.0.a1
pyrus_communis	pycom13g07560 pycom16g07550
rosa_chinensis	RchiOBHm_Chr4g0444361
rosa_laevigata	RLG00000005837
rosa_multiflora	Rmu_sc0002841.1_g000009
rosa_roxburghii	Rroxscaffold_5G00384900
rosa_rugosa	Rorug04G0352100 Rorug04G0352200 Rorug04G0352200
rosa_samantha	Rh4AG412600 Rh4BG424100 Rh4CG438400 Rh4DG419300
rosa_wichuraiana	Rw4G035440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1221
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	2 cut(s)	753, 986
AcoI	YGGCCR	1 cut(s)	540
AfaI	GTAC	2 cut(s)	359, 1293
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgsI	TTSAA	5 cut(s)	16, 479, 1019, 1088, 1178
AhlI	ACTAGT	1 cut(s)	965
AjnI	CCWGG	4 cut(s)	542, 874, 1225, 1306
AluBI	AGCT	7 cut(s)	296, 521, 770, 854, 1010, 1136, 1194
AluI	AGCT	7 cut(s)	296, 521, 770, 854, 1010, 1136, 1194
AlwI	GGATC	2 cut(s)	753, 986
AlwNI	CAGNNNCTG	1 cut(s)	722
AoxI	GGCC	6 cut(s)	391, 540, 719, 921, 1211, 1229
ApeKI	GCWGC	2 cut(s)	767, 1136
AspS9I	GGNCC	4 cut(s)	334, 350, 719, 1229
AsuNHI	GCTAGC	1 cut(s)	574
AvaII	GGWCC	2 cut(s)	334, 350
BaeGI	GKGCMC	2 cut(s)	464, 1224
BalI	TGGCCA	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	1221
BbvI	GCAGC	2 cut(s)	779, 1123
BccI	CCATC	5 cut(s)	238, 317, 605, 778, 1211
BceAI	ACGGC	1 cut(s)	908
BciT130I	CCWGG	4 cut(s)	544, 876, 1227, 1308
BclI	TGATCA	1 cut(s)	724
BcuI	ACTAGT	1 cut(s)	965
BfaI	CTAG	2 cut(s)	575, 966
BglI	GCCNNNNNGGC	1 cut(s)	1219
BisI	GCNGC	2 cut(s)	768, 1137
BlsI	GCNGC	2 cut(s)	769, 1138
Bme1390I	CCNGG	4 cut(s)	544, 876, 1227, 1308
Bme18I	GGWCC	2 cut(s)	334, 350
BmgT120I	GGNCC	4 cut(s)	334, 350, 719, 1229
BmiI	GGNNCC	5 cut(s)	335, 336, 351, 548, 1223
BmrFI	CCNGG	4 cut(s)	544, 876, 1227, 1308
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	4 cut(s)	47, 411, 832, 1087
BmtI	GCTAGC	1 cut(s)	578
BmuI	ACTGGG	1 cut(s)	340
BpmI	CTGGAG	1 cut(s)	1361
Bpu10I	CCTNAGC	1 cut(s)	1140
BsaJI	CCNNGG	6 cut(s)	409, 470, 537, 1225, 1226, 1307
BsaXI	ACNNNNNCTCC	6 cut(s)	35, 65, 110, 140, 571, 601
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse1I	ACTGG	2 cut(s)	335, 443
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	4 cut(s)	544, 876, 1227, 1308
BseDI	CCNNGG	6 cut(s)	409, 470, 537, 1225, 1226, 1307
BseGI	GGATG	3 cut(s)	823, 1102, 1192
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	3 cut(s)	882, 905, 1092
BseNI	ACTGG	2 cut(s)	335, 443
BseRI	GAGGAG	1 cut(s)	579
BseSI	GKGCMC	2 cut(s)	464, 1224
BseXI	GCAGC	2 cut(s)	779, 1123
BseYI	CCCAGC	1 cut(s)	1037
BshFI	GGCC	6 cut(s)	393, 542, 721, 923, 1213, 1231
BshNI	GGYRCC	1 cut(s)	1221
BslFI	GGGAC	6 cut(s)	320, 391, 544, 976, 1032, 1043
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmFI	GGGAC	6 cut(s)	320, 391, 544, 976, 1032, 1043
BsnI	GGCC	6 cut(s)	393, 542, 721, 923, 1213, 1231
Bsp1286I	GDGCHC	2 cut(s)	464, 1224
Bsp1407I	TGTACA	2 cut(s)	357, 1291
Bsp143I	GATC	5 cut(s)	416, 724, 745, 978, 1344
Bsp19I	CCATGG	2 cut(s)	409, 537
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	6 cut(s)	393, 542, 721, 923, 1213, 1231
BspCNI	CTCAG	3 cut(s)	883, 906, 1093
BspHI	TCATGA	1 cut(s)	1347
BspLI	GGNNCC	5 cut(s)	335, 336, 351, 548, 1223
BspOI	GCTAGC	1 cut(s)	578
BspPI	GGATC	2 cut(s)	753, 986
BspT107I	GGYRCC	1 cut(s)	1221
BsrDI	GCAATG	1 cut(s)	99
BsrGI	TGTACA	2 cut(s)	357, 1291
BsrI	ACTGG	2 cut(s)	335, 443
BssECI	CCNNGG	6 cut(s)	409, 470, 537, 1225, 1226, 1307
BssMI	GATC	5 cut(s)	416, 724, 745, 978, 1344
BssT1I	CCWWGG	3 cut(s)	409, 470, 537
Bst2UI	CCWGG	4 cut(s)	544, 876, 1227, 1308
Bst4CI	ACNGT	2 cut(s)	154, 184
Bst6I	CTCTTC	1 cut(s)	273
BstAUI	TGTACA	2 cut(s)	357, 1291
BstC8I	GCNNGC	2 cut(s)	572, 576
BstDEI	CTNAG	5 cut(s)	503, 891, 914, 1101, 1140
BstDSI	CCRYGG	2 cut(s)	409, 537
BstEII	GGTNACC	1 cut(s)	678
BstF5I	GGATG	3 cut(s)	823, 1102, 1192
BstKTI	GATC	5 cut(s)	419, 727, 748, 981, 1347
BstMBI	GATC	5 cut(s)	416, 724, 745, 978, 1344
BstMWI	GCNNNNNNNGC	3 cut(s)	399, 1219, 1228
BstNI	CCWGG	4 cut(s)	544, 876, 1227, 1308
BstNSI	RCATGY	1 cut(s)	574
BstPI	GGTNACC	1 cut(s)	678
BstSCI	CCNGG	4 cut(s)	542, 874, 1225, 1306
BstSLI	GKGCMC	2 cut(s)	464, 1224
BstV1I	GCAGC	2 cut(s)	779, 1123
BsuRI	GGCC	6 cut(s)	393, 542, 721, 923, 1213, 1231
BtgI	CCRYGG	2 cut(s)	409, 537
BtsCI	GGATG	3 cut(s)	823, 1102, 1192
BtsI	GCAGTG	2 cut(s)	464, 579
BtsIMutI	CAGTG	6 cut(s)	464, 579, 606, 675, 888, 1202
Cac8I	GCNNGC	2 cut(s)	572, 576
CaiI	CAGNNNCTG	1 cut(s)	722
CciI	TCATGA	1 cut(s)	1347
Cfr13I	GGNCC	4 cut(s)	334, 350, 719, 1229
Csp6I	GTAC	2 cut(s)	358, 1292
CviAII	CATG	7 cut(s)	269, 410, 538, 571, 790, 1323, 1348
CviQI	GTAC	2 cut(s)	358, 1292
DdeI	CTNAG	5 cut(s)	503, 891, 914, 1101, 1140
DpnI	GATC	5 cut(s)	418, 726, 747, 980, 1346
DpnII	GATC	5 cut(s)	416, 724, 745, 978, 1344
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	3 cut(s)	409, 470, 537
Eco47I	GGWCC	2 cut(s)	334, 350
Eco91I	GGTNACC	1 cut(s)	678
EcoO109I	RGGNCCY	3 cut(s)	334, 350, 719
EcoO65I	GGTNACC	1 cut(s)	678
EcoRII	CCWGG	4 cut(s)	542, 874, 1225, 1306
EcoT14I	CCWWGG	3 cut(s)	409, 470, 537
ErhI	CCWWGG	3 cut(s)	409, 470, 537
FaeI	CATG	7 cut(s)	272, 413, 541, 574, 793, 1326, 1351
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	6 cut(s)	320, 391, 544, 976, 1032, 1043
FatI	CATG	7 cut(s)	268, 409, 537, 570, 789, 1322, 1347
FbaI	TGATCA	1 cut(s)	724
Fnu4HI	GCNGC	2 cut(s)	768, 1137
FokI	GGATG	3 cut(s)	810, 1109, 1199
Fsp4HI	GCNGC	2 cut(s)	768, 1137
FspBI	CTAG	2 cut(s)	575, 966
GluI	GCNGC	2 cut(s)	768, 1137
GsaI	CCCAGC	1 cut(s)	1041
GsuI	CTGGAG	1 cut(s)	1361
HaeIII	GGCC	6 cut(s)	393, 542, 721, 923, 1213, 1231
Hin1II	CATG	7 cut(s)	272, 413, 541, 574, 793, 1326, 1351
HinfI	GANTC	4 cut(s)	533, 557, 883, 1360
Hpy166II	GTNNAC	3 cut(s)	157, 604, 1292
Hpy188I	TCNGA	3 cut(s)	421, 882, 915
Hpy188III	TCNNGA	2 cut(s)	61, 1348
Hpy8I	GTNNAC	3 cut(s)	157, 604, 1292
HpyAV	CCTTC	4 cut(s)	64, 383, 572, 1013
HpyCH4III	ACNGT	2 cut(s)	154, 184
HpyCH4V	TGCA	5 cut(s)	38, 402, 570, 823, 1279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	399, 1219, 1228
HpyF3I	CTNAG	5 cut(s)	503, 891, 914, 1101, 1140
Hsp92II	CATG	7 cut(s)	272, 413, 541, 574, 793, 1326, 1351
KflI	GGGWCCC	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	724
Kzo9I	GATC	5 cut(s)	416, 724, 745, 978, 1344
Lsp1109I	GCAGC	2 cut(s)	779, 1123
LweI	GCATC	4 cut(s)	47, 411, 832, 1087
MaeI	CTAG	2 cut(s)	575, 966
MaeIII	GTNAC	5 cut(s)	311, 530, 678, 991, 1200
MalI	GATC	5 cut(s)	418, 726, 747, 980, 1346
MboI	GATC	5 cut(s)	416, 724, 745, 978, 1344
MfeI	CAATTG	1 cut(s)	551
MhlI	GDGCHC	2 cut(s)	464, 1224
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	6 cut(s)	381, 397, 551, 734, 987, 1181
MluNI	TGGCCA	1 cut(s)	542
MlyI	GAGTC	2 cut(s)	527, 566
Mox20I	TGGCCA	1 cut(s)	542
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	4 cut(s)	384, 693, 1170, 1257
MslI	CAYNNNNRTG	1 cut(s)	794
Msp20I	TGGCCA	1 cut(s)	542
MspA1I	CMGCKG	1 cut(s)	770
MspR9I	CCNGG	4 cut(s)	544, 876, 1227, 1308
MunI	CAATTG	1 cut(s)	551
MvaI	CCWGG	4 cut(s)	544, 876, 1227, 1308
MwoI	GCNNNNNNNGC	3 cut(s)	399, 1219, 1228
NcoI	CCATGG	2 cut(s)	409, 537
NdeII	GATC	5 cut(s)	416, 724, 745, 978, 1344
NheI	GCTAGC	1 cut(s)	574
NlaIII	CATG	7 cut(s)	272, 413, 541, 574, 793, 1326, 1351
NlaIV	GGNNCC	5 cut(s)	335, 336, 351, 548, 1223
NmuCI	GTSAC	5 cut(s)	311, 530, 678, 991, 1200
NspI	RCATGY	1 cut(s)	574
PaeI	GCATGC	1 cut(s)	574
PagI	TCATGA	1 cut(s)	1347
PasI	CCCWGGG	1 cut(s)	1226
PfeI	GAWTC	2 cut(s)	883, 1360
PkrI	GCNGC	2 cut(s)	769, 1138
PleI	GAGTC	2 cut(s)	527, 565
PpsI	GAGTC	2 cut(s)	527, 565
PpuMI	RGGWCCY	2 cut(s)	334, 350
Psp5II	RGGWCCY	2 cut(s)	334, 350
Psp6I	CCWGG	4 cut(s)	542, 874, 1225, 1306
PspEI	GGTNACC	1 cut(s)	678
PspFI	CCCAGC	1 cut(s)	1037
PspGI	CCWGG	4 cut(s)	542, 874, 1225, 1306
PspN4I	GGNNCC	5 cut(s)	335, 336, 351, 548, 1223
PspPI	GGNCC	4 cut(s)	334, 350, 719, 1229
PspPPI	RGGWCCY	2 cut(s)	334, 350
PstNI	CAGNNNCTG	1 cut(s)	722
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	2 cut(s)	359, 1293
RsaNI	GTAC	2 cut(s)	358, 1292
RseI	CAYNNNNRTG	1 cut(s)	794
SaqAI	TTAA	4 cut(s)	384, 693, 1170, 1257
SatI	GCNGC	2 cut(s)	768, 1137
Sau3AI	GATC	5 cut(s)	416, 724, 745, 978, 1344
Sau96I	GGNCC	4 cut(s)	334, 350, 719, 1229
SchI	GAGTC	2 cut(s)	527, 566
ScrFI	CCNGG	4 cut(s)	544, 876, 1227, 1308
SduI	GDGCHC	2 cut(s)	464, 1224
SfaNI	GCATC	4 cut(s)	47, 411, 832, 1087
SinI	GGWCC	2 cut(s)	334, 350
SmiMI	CAYNNNNRTG	1 cut(s)	794
SpeI	ACTAGT	1 cut(s)	965
SphI	GCATGC	1 cut(s)	574
Sse9I	AATT	6 cut(s)	381, 397, 551, 734, 987, 1181
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	2 cut(s)	575, 966
StyD4I	CCNGG	4 cut(s)	542, 874, 1225, 1306
StyI	CCWWGG	3 cut(s)	409, 470, 537
TaaI	ACNGT	2 cut(s)	154, 184
TasI	AATT	6 cut(s)	381, 397, 551, 734, 987, 1181
TatI	WGTACW	2 cut(s)	357, 1291
TfiI	GAWTC	2 cut(s)	883, 1360
Tru1I	TTAA	4 cut(s)	384, 693, 1170, 1257
Tru9I	TTAA	4 cut(s)	384, 693, 1170, 1257
TscAI	CASTG	6 cut(s)	464, 586, 613, 675, 895, 1209
TseFI	GTSAC	5 cut(s)	311, 530, 678, 991, 1200
TseI	GCWGC	2 cut(s)	767, 1136
Tsp45I	GTSAC	5 cut(s)	311, 530, 678, 991, 1200
TspDTI	ATGAA	7 cut(s)	46, 70, 176, 285, 747, 1253, 1364
TspRI	CASTG	6 cut(s)	464, 586, 613, 675, 895, 1209
VpaK11BI	GGWCC	2 cut(s)	334, 350
XceI	RCATGY	1 cut(s)	574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XspI	CTAG	2 cut(s)	575, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.