Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011918

Physical Location & Seq

Genomic Coordinates Reverse (-)

26812223 .. 26814651

Gene Structure 2429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G258400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGGTACAATAACAACCCCATTCAAAGACCCATCTCATCACTCTCTTGCCAGAAAGCTCTTACCTTATGCCATTTATGTCATCCTCCCCATAGCTGTCATTCGCTTATACTTGTACACTCCCTCTCTCCCTCAATCCACAGATCAGCTCCCTCATTCCACTGCCATTACCATCAGCACCACCTCATCGTCTTCTTCTTCTCCTTCCTCACTGCCTCCTTTTCCTTCTTCTCAAGAAGTAGAAAGAGATAAAGAAACTCCATGTGACTACACCAGTGGGGATTGGGTCCAAGACAAGCTGGGCCCTTTGTACAATGGCACCACCTGTGGTACAATCAAGAAAGGACAGAATTGCATCACCCATGGGAGACCTGATTTGGGCTATCTCTTTTGGAGGTGGAAACCCAAGCAATGCCACATACCAAGGTTTGAACCCAACACTTTTCTCCAAATCCTTAGCAACAAACACATAGCATTTGTGGGTGACTCCATGGCCAGGAACCAATTGGAGTCTCTTCTTTGCATGCTTGCCACTGTTTCTCCTCCCAACCTTGTTTATACTGATGGTGAGGATAACAAGTTTAGAAGATGGCATTTTTCTTCTCACAATGTCAGTGTGTCAGTTTATTGGTCACCATTTCTTGTGAAAGGTATTGAGAAATCACAACATGGTCCAAATTACAACAAGTTGTATTTGGATCAAGTAGATGAAAGGTGGGCAGCAGATTTGGGTCAAATGGACAAGATTGTGTTGTCTGTTGGGCATTGGTTTTTACATCCAGCAGTGTATTTTGAGGGTGATTCAGTTCTTGGCTGCCATTACTGCCCTGGTCTTAATCACAGTGAGATTGGTTTCTATGATGTGCTGAGAAAAGCCATAAAGACTACCCTCAAGACCATAACTGAAAGGAGAGTTGCTAATGCTAATGGCAATGGGGTTAATGTAATTGTGACAACATTTTCACCTGCACATTTTGAAGGTGAGTGGGACAAGGCAGGGGCTTGCCCCAAGACCAAGCCTTACATGGAGGGAGAGAAGCAGCTTGAAGGAATGGATGCTGAGATGAGGCAACTTGAGGTTGAAGAAGTAGAAGCTGCTAAGGCAAATGGTAAAAAATTTGCAGGGTTTAGGCTGCAAGCATTGGATGTGACCAAATTATCACTGATGAGGCCAGATGGTCATCCAGGGCCTTATATGAATCCATTTCCATTTGCTGATGGGGTTCAAGAGAGGGTCCAAAATGATTGTGTTCATTGGTGCTTGCCAGGGCCTATAGACACATGGAATGAGATAATGCTAGAGGTTCTGAACAAATGGAATAATCAGGGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

445

Amino Acids

49.99

Weight (kDa)

6.46

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70230
fragaria_vesca	FvH4_4g34920
malus_domestica	MD13G1087900.v1.1 MD16G1088200.v1.1
prunus_persica	Prupe.1G258400_v2.0.a1
pyrus_communis	pycom13g07560 pycom16g07550
rosa_chinensis	RchiOBHm_Chr4g0444361
rosa_laevigata	RLG00000005837
rosa_multiflora	Rmu_sc0002841.1_g000009
rosa_roxburghii	Rroxscaffold_5G00384900
rosa_rugosa	Rorug04G0352100 Rorug04G0352200 Rorug04G0352200
rosa_samantha	Rh4AG412600 Rh4BG424100 Rh4CG438400 Rh4DG419300
rosa_wichuraiana	Rw4G035440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	973
Acc36I	ACCTGC	1 cut(s)	973
AccB1I	GGYRCC	1 cut(s)	317
AclWI	GGATC	1 cut(s)	705
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	1115
AfaI	GTAC	4 cut(s)	7, 116, 311, 331
AfiI	CCNNNNNNNGG	2 cut(s)	377, 495
AgsI	TTSAA	6 cut(s)	25, 431, 977, 1046, 1082, 1226
AjnI	CCWGG	4 cut(s)	494, 826, 1183, 1264
AluBI	AGCT	6 cut(s)	58, 95, 148, 298, 1042, 1094
AluI	AGCT	6 cut(s)	58, 95, 148, 298, 1042, 1094
Alw26I	GTCTC	2 cut(s)	361, 516
AlwI	GGATC	1 cut(s)	705
AoxI	GGCC	5 cut(s)	301, 492, 1169, 1187, 1268
ApaI	GGGCCC	1 cut(s)	305
ApeKI	GCWGC	5 cut(s)	719, 813, 1039, 1094, 1132
ApoI	RAATTY	1 cut(s)	1115
AspS9I	GGNCC	7 cut(s)	286, 301, 302, 671, 1187, 1234, 1268
AsuHPI	GGTGA	7 cut(s)	349, 494, 578, 624, 809, 954, 992
AvaII	GGWCC	3 cut(s)	286, 671, 1234
BaeGI	GKGCMC	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	5 cut(s)	731, 800, 1051, 1081, 1119
BccI	CCATC	6 cut(s)	40, 179, 557, 582, 1169, 1211
BciT130I	CCWGG	4 cut(s)	496, 828, 1185, 1266
BcoDI	GTCTC	2 cut(s)	361, 516
BfaI	CTAG	1 cut(s)	1298
BfmI	CTRYAG	1 cut(s)	1272
BfuAI	ACCTGC	1 cut(s)	973
BisI	GCNGC	5 cut(s)	720, 814, 1040, 1095, 1133
BlsI	GCNGC	5 cut(s)	721, 815, 1041, 1096, 1134
Bme1390I	CCNGG	4 cut(s)	496, 828, 1185, 1266
Bme18I	GGWCC	3 cut(s)	286, 671, 1234
BmgT120I	GGNCC	7 cut(s)	286, 301, 302, 671, 1187, 1234, 1268
BmiI	GGNNCC	5 cut(s)	287, 303, 319, 500, 1235
BmrFI	CCNGG	4 cut(s)	496, 828, 1185, 1266
BmsI	GCATC	2 cut(s)	363, 1045
BpiI	GAAGAC	1 cut(s)	183
Bpu10I	CCTNAGC	2 cut(s)	455, 1098
BpuEI	CTTGAG	3 cut(s)	216, 875, 1094
BsaBI	GATNNNNATC	1 cut(s)	1179
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	6 cut(s)	361, 422, 489, 826, 1184, 1265
BsaXI	ACNNNNNCTCC	2 cut(s)	523, 553
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 495
Bse1I	ACTGG	1 cut(s)	273
Bse3DI	GCAATG	2 cut(s)	416, 937
Bse8I	GATNNNNATC	1 cut(s)	1179
BseBI	CCWGG	4 cut(s)	496, 828, 1185, 1266
BseDI	CCNNGG	6 cut(s)	361, 422, 489, 826, 1184, 1265
BseGI	GGATG	5 cut(s)	81, 775, 1060, 1150, 1180
BseJI	GATNNNNATC	1 cut(s)	1179
BseLI	CCNNNNNNNGG	2 cut(s)	377, 495
BseMI	GCAATG	2 cut(s)	416, 937
BseMII	CTCAG	2 cut(s)	857, 1050
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	531
BseSI	GKGCMC	1 cut(s)	305
BseXI	GCAGC	5 cut(s)	731, 800, 1051, 1081, 1119
BseYI	CCCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	951
BshFI	GGCC	5 cut(s)	303, 494, 1171, 1189, 1270
BshNI	GGYRCC	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	1001
BslI	CCNNNNNNNGG	2 cut(s)	377, 495
BsmAI	GTCTC	2 cut(s)	361, 516
BsmFI	GGGAC	1 cut(s)	1001
BsnI	GGCC	5 cut(s)	303, 494, 1171, 1189, 1270
Bso31I	GGTCTC	1 cut(s)	361
Bsp120I	GGGCCC	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp1407I	TGTACA	2 cut(s)	114, 309
Bsp143I	GATC	2 cut(s)	142, 697
Bsp19I	CCATGG	2 cut(s)	361, 489
BspANI	GGCC	5 cut(s)	303, 494, 1171, 1189, 1270
BspCNI	CTCAG	2 cut(s)	858, 1051
BspLI	GGNNCC	5 cut(s)	287, 303, 319, 500, 1235
BspMI	ACCTGC	1 cut(s)	973
BspPI	GGATC	1 cut(s)	705
BspT107I	GGYRCC	1 cut(s)	317
BspTNI	GGTCTC	1 cut(s)	361
BsrDI	GCAATG	2 cut(s)	416, 937
BsrGI	TGTACA	2 cut(s)	114, 309
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	6 cut(s)	361, 422, 489, 826, 1184, 1265
BssMI	GATC	2 cut(s)	142, 697
BssT1I	CCWWGG	3 cut(s)	361, 422, 489
Bst2UI	CCWGG	4 cut(s)	496, 828, 1185, 1266
Bst4CI	ACNGT	2 cut(s)	535, 842
Bst6I	CTCTTC	1 cut(s)	519
BstAUI	TGTACA	2 cut(s)	114, 309
BstC8I	GCNNGC	5 cut(s)	524, 528, 1003, 1137, 1262
BstDEI	CTNAG	4 cut(s)	455, 866, 1059, 1098
BstDSI	CCRYGG	2 cut(s)	361, 489
BstEII	GGTNACC	1 cut(s)	630
BstF5I	GGATG	5 cut(s)	81, 775, 1060, 1150, 1180
BstKTI	GATC	2 cut(s)	145, 700
BstMAI	GTCTC	2 cut(s)	361, 516
BstMBI	GATC	2 cut(s)	142, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	822, 1100
BstNI	CCWGG	4 cut(s)	496, 828, 1185, 1266
BstNSI	RCATGY	1 cut(s)	526
BstPI	GGTNACC	1 cut(s)	630
BstSCI	CCNGG	4 cut(s)	494, 826, 1183, 1264
BstSFI	CTRYAG	1 cut(s)	1272
BstSLI	GKGCMC	1 cut(s)	305
BstV1I	GCAGC	5 cut(s)	731, 800, 1051, 1081, 1119
BstV2I	GAAGAC	1 cut(s)	183
BsuRI	GGCC	5 cut(s)	303, 494, 1171, 1189, 1270
BtgI	CCRYGG	2 cut(s)	361, 489
BtsCI	GGATG	5 cut(s)	81, 775, 1060, 1150, 1180
BtsI	GCAGTG	3 cut(s)	159, 209, 789
BtsIMutI	CAGTG	8 cut(s)	159, 209, 280, 531, 619, 789, 847, 1160
BveI	ACCTGC	1 cut(s)	973
Cac8I	GCNNGC	5 cut(s)	524, 528, 1003, 1137, 1262
Cfr13I	GGNCC	7 cut(s)	286, 301, 302, 671, 1187, 1234, 1268
Csp6I	GTAC	4 cut(s)	6, 115, 310, 330
CviAII	CATG	7 cut(s)	261, 362, 490, 523, 668, 1024, 1281
CviQI	GTAC	4 cut(s)	6, 115, 310, 330
DdeI	CTNAG	4 cut(s)	455, 866, 1059, 1098
DpnI	GATC	2 cut(s)	144, 699
DpnII	GATC	2 cut(s)	142, 697
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	3 cut(s)	361, 422, 489
Eco24I	GRGCYC	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	361
Eco47I	GGWCC	3 cut(s)	286, 671, 1234
Eco91I	GGTNACC	1 cut(s)	630
EcoO109I	RGGNCCY	3 cut(s)	302, 1187, 1268
EcoO65I	GGTNACC	1 cut(s)	630
EcoRII	CCWGG	4 cut(s)	494, 826, 1183, 1264
EcoT14I	CCWWGG	3 cut(s)	361, 422, 489
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	3 cut(s)	361, 422, 489
FaeI	CATG	7 cut(s)	264, 365, 493, 526, 671, 1027, 1284
FaqI	GGGAC	1 cut(s)	1001
FatI	CATG	7 cut(s)	260, 361, 489, 522, 667, 1023, 1280
Fnu4HI	GCNGC	5 cut(s)	720, 814, 1040, 1095, 1133
FokI	GGATG	5 cut(s)	68, 762, 1067, 1157, 1167
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	5 cut(s)	720, 814, 1040, 1095, 1133
FspBI	CTAG	1 cut(s)	1298
GluI	GCNGC	5 cut(s)	720, 814, 1040, 1095, 1133
GsaI	CCCAGC	1 cut(s)	302
HaeIII	GGCC	5 cut(s)	303, 494, 1171, 1189, 1270
Hin1II	CATG	7 cut(s)	264, 365, 493, 526, 671, 1027, 1284
HinfI	GANTC	4 cut(s)	485, 509, 800, 1198
HphI	GGTGA	7 cut(s)	349, 494, 578, 624, 809, 954, 992
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	1308
Hpy188III	TCNNGA	4 cut(s)	233, 337, 892, 1226
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	4 cut(s)	213, 234, 971, 1040
HpyCH4III	ACNGT	2 cut(s)	535, 842
HpyCH4V	TGCA	5 cut(s)	354, 522, 968, 1121, 1135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	822, 1100
HpyF3I	CTNAG	4 cut(s)	455, 866, 1059, 1098
Hsp92II	CATG	7 cut(s)	264, 365, 493, 526, 671, 1027, 1284
Kzo9I	GATC	2 cut(s)	142, 697
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	5 cut(s)	731, 800, 1051, 1081, 1119
LweI	GCATC	2 cut(s)	363, 1045
MaeI	CTAG	1 cut(s)	1298
MaeIII	GTNAC	5 cut(s)	263, 482, 630, 949, 1147
MalI	GATC	2 cut(s)	144, 699
MboI	GATC	2 cut(s)	142, 697
MboII	GAAGA	8 cut(s)	183, 186, 189, 219, 506, 591, 597, 1094
MfeI	CAATTG	1 cut(s)	503
MhlI	GDGCHC	1 cut(s)	305
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	6 cut(s)	349, 503, 676, 945, 1115, 1154
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	479, 518
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	2 cut(s)	834, 939
Msp20I	TGGCCA	1 cut(s)	494
MspR9I	CCNGG	4 cut(s)	496, 828, 1185, 1266
MunI	CAATTG	1 cut(s)	503
MvaI	CCWGG	4 cut(s)	496, 828, 1185, 1266
MwoI	GCNNNNNNNGC	2 cut(s)	822, 1100
NcoI	CCATGG	2 cut(s)	361, 489
NdeII	GATC	2 cut(s)	142, 697
NlaIII	CATG	7 cut(s)	264, 365, 493, 526, 671, 1027, 1284
NlaIV	GGNNCC	5 cut(s)	287, 303, 319, 500, 1235
NmuCI	GTSAC	5 cut(s)	263, 482, 630, 949, 1147
NspI	RCATGY	1 cut(s)	526
PaeI	GCATGC	1 cut(s)	526
PaqCI	CACCTGC	1 cut(s)	973
PfeI	GAWTC	2 cut(s)	800, 1198
PkrI	GCNGC	5 cut(s)	721, 815, 1041, 1096, 1134
PleI	GAGTC	2 cut(s)	479, 517
PpsI	GAGTC	2 cut(s)	479, 517
Psp6I	CCWGG	4 cut(s)	494, 826, 1183, 1264
PspEI	GGTNACC	1 cut(s)	630
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	4 cut(s)	494, 826, 1183, 1264
PspN4I	GGNNCC	5 cut(s)	287, 303, 319, 500, 1235
PspOMI	GGGCCC	1 cut(s)	301
PspPI	GGNCC	7 cut(s)	286, 301, 302, 671, 1187, 1234, 1268
RsaI	GTAC	4 cut(s)	7, 116, 311, 331
RsaNI	GTAC	4 cut(s)	6, 115, 310, 330
SaqAI	TTAA	2 cut(s)	834, 939
SatI	GCNGC	5 cut(s)	720, 814, 1040, 1095, 1133
Sau3AI	GATC	2 cut(s)	142, 697
Sau96I	GGNCC	7 cut(s)	286, 301, 302, 671, 1187, 1234, 1268
SchI	GAGTC	2 cut(s)	479, 518
ScrFI	CCNGG	4 cut(s)	496, 828, 1185, 1266
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	2 cut(s)	363, 1045
SfcI	CTRYAG	1 cut(s)	1272
SinI	GGWCC	3 cut(s)	286, 671, 1234
SmlI	CTYRAG	3 cut(s)	231, 890, 1073
SmoI	CTYRAG	3 cut(s)	231, 890, 1073
SphI	GCATGC	1 cut(s)	526
Sse9I	AATT	6 cut(s)	349, 503, 676, 945, 1115, 1154
SspMI	CTAG	1 cut(s)	1298
StyD4I	CCNGG	4 cut(s)	494, 826, 1183, 1264
StyI	CCWWGG	3 cut(s)	361, 422, 489
TaaI	ACNGT	2 cut(s)	535, 842
TasI	AATT	6 cut(s)	349, 503, 676, 945, 1115, 1154
TatI	WGTACW	2 cut(s)	114, 309
TfiI	GAWTC	2 cut(s)	800, 1198
Tru1I	TTAA	2 cut(s)	834, 939
Tru9I	TTAA	2 cut(s)	834, 939
TscAI	CASTG	8 cut(s)	166, 216, 280, 538, 619, 789, 847, 1167
TseFI	GTSAC	5 cut(s)	263, 482, 630, 949, 1147
TseI	GCWGC	5 cut(s)	719, 813, 1039, 1094, 1132
Tsp45I	GTSAC	5 cut(s)	263, 482, 630, 949, 1147
TspDTI	ATGAA	3 cut(s)	723, 1211, 1241
TspRI	CASTG	8 cut(s)	166, 216, 280, 538, 619, 789, 847, 1167
VpaK11BI	GGWCC	3 cut(s)	286, 671, 1234
XapI	RAATTY	1 cut(s)	1115
XceI	RCATGY	1 cut(s)	526
XcmI	CCANNNNNNNNNTGG	3 cut(s)	502, 824, 1021
XspI	CTAG	1 cut(s)	1298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.