Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011918

Physical Location & Seq

Genomic Coordinates Forward (+)

5029316 .. 5030348

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGAACAACAAGAAGCCCTTTCAAAGACCAACATCATCACTCATCATCTCTTGCTAAAAAGCTCTTGCCTTATGCAATCTATGTCCTCCTCCCCATTGCTGTAATCCGCTTGTACTTCTACACTCCCTCCCCCTCTCTCCCCTCCACAGATCACCTCCCTCACTCCACTGAAATTACCATCTCAACCTCCTCCTCCTCTTCTTCTTCCTCTCCTTCCCCATTGCCTCCCGTTTCCTCCTCTCAAGAAGAGGAAAAGGCTAAAGAAACTACACCTTCATGTGACTACACCAGGGGCAAATGGGTCCATGAGAAGCTGGGCCCTTTGTACAATGGCACAACCTGTGGGACAATCAAGGAAGGTCAGAACTGCATCACCCATGGAAGAACTGATTTGGGTTATCTCTACTGGAGGTGGAAACCCAGCAAGTGCCAGCTTCCCAGGTTTGAACCCAGCACTTTTCTCCATCTCATTAGCAACAAGCACATAGCTTTTGTGGGGGACTCCATGGCCAGGAACCAGTTGGAGTCCCTCCTCTGCCTGCTTGCCACTGCCTCTCCTCCCAACCTTGTTTACACAGATGGGGAGGAGAACAAGTTTAGGAGATGGAATTTTCCATCCCACGATGTCAATGTGTCAGTTTATTGGTCACCATTTCTTGTGAAAGGGGTTGAGAAATCACCAAATGGTCCAAATTATAATAAATTGTATTTGGATCAAGTTAATGAAAGGTGGGCTGCAGATTTGGGGGGATTTGATATGATTGTGTTGTCAGTTGGGCATTGGTTTTTGCACCCAGCAGTGTATTTTGAGGGGGATGATGTTCTGGGGTGCCATTTTTGCCCTGGATTAAATCAGACTGATCGATCGAATTCTATGATGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

296

Amino Acids

33.13

Weight (kDa)

6.88

Isoelectric Point (pI)

59.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	93 - 145	1.9e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	146 - 279	5.6e-43	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70230
fragaria_vesca	FvH4_4g34920
malus_domestica	MD13G1087900.v1.1 MD16G1088200.v1.1
prunus_persica	Prupe.1G258400_v2.0.a1
pyrus_communis	pycom13g07560 pycom16g07550
rosa_chinensis	RchiOBHm_Chr4g0444361
rosa_laevigata	RLG00000005837
rosa_multiflora	Rmu_sc0002841.1_g000009
rosa_roxburghii	Rroxscaffold_5G00384900
rosa_rugosa	Rorug04G0352100 Rorug04G0352200 Rorug04G0352200
rosa_samantha	Rh4AG412600 Rh4BG424100 Rh4CG438400 Rh4DG419300
rosa_wichuraiana	Rw4G035440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	699
AccB1I	GGYRCC	1 cut(s)	831
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	1 cut(s)	723
AcoI	YGGCCR	1 cut(s)	510
AcsI	RAATTY	2 cut(s)	610, 871
AfaI	GTAC	2 cut(s)	116, 329
AfiI	CCNNNNNNNGG	1 cut(s)	513
AgsI	TTSAA	2 cut(s)	25, 449
AjnI	CCWGG	4 cut(s)	290, 440, 512, 844
AluBI	AGCT	4 cut(s)	64, 316, 436, 491
AluI	AGCT	4 cut(s)	64, 316, 436, 491
AlwI	GGATC	1 cut(s)	723
AoxI	GGCC	2 cut(s)	319, 510
ApaI	GGGCCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	737
ApoI	RAATTY	2 cut(s)	610, 871
AspS9I	GGNCC	4 cut(s)	304, 319, 320, 689
AsuHPI	GGTGA	4 cut(s)	146, 367, 642, 672
AvaII	GGWCC	2 cut(s)	304, 689
BaeGI	GKGCMC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	831
BanII	GRGCYC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	724
BccI	CCATC	5 cut(s)	188, 474, 575, 600, 625
BciT130I	CCWGG	4 cut(s)	292, 442, 514, 846
BfmI	CTRYAG	1 cut(s)	738
BisI	GCNGC	1 cut(s)	738
BlsI	GCNGC	1 cut(s)	739
Bme1390I	CCNGG	4 cut(s)	292, 442, 514, 846
Bme18I	GGWCC	2 cut(s)	304, 689
BmgT120I	GGNCC	4 cut(s)	304, 319, 320, 689
BmiI	GGNNCC	4 cut(s)	305, 321, 518, 833
BmrFI	CCNGG	4 cut(s)	292, 442, 514, 846
BmsI	GCATC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	430
BpuEI	CTTGAG	1 cut(s)	228
Bsa29I	ATCGAT	1 cut(s)	865
BsaJI	CCNNGG	5 cut(s)	291, 379, 440, 507, 844
BsaXI	ACNNNNNCTCC	6 cut(s)	113, 143, 541, 571, 581, 611
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse1I	ACTGG	2 cut(s)	413, 520
Bse3DI	GCAATG	2 cut(s)	96, 221
BseBI	CCWGG	4 cut(s)	292, 442, 514, 846
BseCI	ATCGAT	1 cut(s)	865
BseDI	CCNNGG	5 cut(s)	291, 379, 440, 507, 844
BseGI	GGATG	2 cut(s)	617, 823
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMI	GCAATG	2 cut(s)	96, 221
BseNI	ACTGG	2 cut(s)	413, 520
BseRI	GAGGAG	8 cut(s)	80, 181, 184, 187, 229, 524, 549, 602
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	724
BseYI	CCCAGC	4 cut(s)	316, 422, 452, 796
Bsh1285I	CGRYCG	1 cut(s)	869
BshFI	GGCC	2 cut(s)	321, 512
BshNI	GGYRCC	1 cut(s)	831
BshVI	ATCGAT	1 cut(s)	865
BsiEI	CGRYCG	1 cut(s)	869
BslFI	GGGAC	3 cut(s)	361, 514, 515
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmFI	GGGAC	3 cut(s)	361, 514, 515
BsnI	GGCC	2 cut(s)	321, 512
Bsp120I	GGGCCC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	4 cut(s)	151, 715, 862, 866
Bsp19I	CCATGG	2 cut(s)	379, 507
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	2 cut(s)	321, 512
BspDI	ATCGAT	1 cut(s)	865
BspLI	GGNNCC	4 cut(s)	305, 321, 518, 833
BspMAI	CTGCAG	1 cut(s)	742
BspPI	GGATC	1 cut(s)	723
BspT107I	GGYRCC	1 cut(s)	831
BsrDI	GCAATG	2 cut(s)	96, 221
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	413, 520
BssECI	CCNNGG	5 cut(s)	291, 379, 440, 507, 844
BssMI	GATC	4 cut(s)	151, 715, 862, 866
BssT1I	CCWWGG	2 cut(s)	379, 507
Bst2UI	CCWGG	4 cut(s)	292, 442, 514, 846
Bst6I	CTCTTC	2 cut(s)	205, 243
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	434, 542, 546
BstDSI	CCRYGG	2 cut(s)	379, 507
BstEII	GGTNACC	1 cut(s)	648
BstF5I	GGATG	2 cut(s)	617, 823
BstKTI	GATC	4 cut(s)	154, 718, 865, 869
BstMBI	GATC	4 cut(s)	151, 715, 862, 866
BstMCI	CGRYCG	1 cut(s)	869
BstMWI	GCNNNNNNNGC	1 cut(s)	840
BstNI	CCWGG	4 cut(s)	292, 442, 514, 846
BstPI	GGTNACC	1 cut(s)	648
BstSCI	CCNGG	4 cut(s)	290, 440, 512, 844
BstSFI	CTRYAG	1 cut(s)	738
BstSLI	GKGCMC	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	724
Bsu15I	ATCGAT	1 cut(s)	865
BsuRI	GGCC	2 cut(s)	321, 512
BsuTUI	ATCGAT	1 cut(s)	865
BtgI	CCRYGG	2 cut(s)	379, 507
BtsCI	GGATG	2 cut(s)	617, 823
BtsI	GCAGTG	2 cut(s)	549, 807
BtsIMutI	CAGTG	3 cut(s)	168, 549, 807
Cac8I	GCNNGC	3 cut(s)	434, 542, 546
Cfr13I	GGNCC	4 cut(s)	304, 319, 320, 689
ClaI	ATCGAT	1 cut(s)	865
Csp6I	GTAC	2 cut(s)	115, 328
CviAII	CATG	4 cut(s)	279, 308, 380, 508
CviJI	RGCY	9 cut(s)	18, 64, 260, 316, 321, 436, 491, 512, 737
CviKI_1	RGCY	9 cut(s)	18, 64, 260, 316, 321, 436, 491, 512, 737
CviQI	GTAC	2 cut(s)	115, 328
DpnI	GATC	4 cut(s)	153, 717, 864, 868
DpnII	GATC	4 cut(s)	151, 715, 862, 866
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	2 cut(s)	205, 243
EarI	CTCTTC	2 cut(s)	205, 243
Eco130I	CCWWGG	2 cut(s)	379, 507
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	304, 689
Eco91I	GGTNACC	1 cut(s)	648
EcoO109I	RGGNCCY	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	648
EcoRI	GAATTC	1 cut(s)	871
EcoRII	CCWGG	4 cut(s)	290, 440, 512, 844
EcoT14I	CCWWGG	2 cut(s)	379, 507
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	2 cut(s)	379, 507
FaeI	CATG	4 cut(s)	282, 311, 383, 511
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	3 cut(s)	361, 514, 515
FatI	CATG	4 cut(s)	278, 307, 379, 507
Fnu4HI	GCNGC	1 cut(s)	738
FokI	GGATG	2 cut(s)	604, 830
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	738
GluI	GCNGC	1 cut(s)	738
GsaI	CCCAGC	4 cut(s)	320, 426, 456, 800
GsuI	CTGGAG	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	321, 512
Hin1II	CATG	4 cut(s)	282, 311, 383, 511
HinfI	GANTC	2 cut(s)	503, 527
HphI	GGTGA	4 cut(s)	146, 367, 642, 672
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	2 cut(s)	366, 858
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	574
HpyAV	CCTTC	3 cut(s)	225, 285, 353
HpyCH4V	TGCA	4 cut(s)	77, 372, 740, 793
HpyF10VI	GCNNNNNNNGC	1 cut(s)	840
Hsp92II	CATG	4 cut(s)	282, 311, 383, 511
Kzo9I	GATC	4 cut(s)	151, 715, 862, 866
Lsp1109I	GCAGC	1 cut(s)	724
LweI	GCATC	1 cut(s)	381
MaeIII	GTNAC	2 cut(s)	281, 648
MalI	GATC	4 cut(s)	153, 717, 864, 868
MboI	GATC	4 cut(s)	151, 715, 862, 866
MboII	GAAGA	5 cut(s)	192, 195, 198, 260, 396
MhlI	GDGCHC	1 cut(s)	323
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	5 cut(s)	174, 610, 694, 704, 871
MluNI	TGGCCA	1 cut(s)	512
MlyI	GAGTC	2 cut(s)	497, 536
MmeI	TCCRAC	1 cut(s)	504
Mox20I	TGGCCA	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	512
MseI	TTAA	2 cut(s)	723, 851
MslI	CAYNNNNRTG	1 cut(s)	277
Msp20I	TGGCCA	1 cut(s)	512
MspR9I	CCNGG	4 cut(s)	292, 442, 514, 846
MvaI	CCWGG	4 cut(s)	292, 442, 514, 846
MwoI	GCNNNNNNNGC	1 cut(s)	840
NcoI	CCATGG	2 cut(s)	379, 507
NdeII	GATC	4 cut(s)	151, 715, 862, 866
NlaIII	CATG	4 cut(s)	282, 311, 383, 511
NlaIV	GGNNCC	4 cut(s)	305, 321, 518, 833
NmuCI	GTSAC	2 cut(s)	281, 648
PkrI	GCNGC	1 cut(s)	739
Ple19I	CGATCG	1 cut(s)	869
PleI	GAGTC	2 cut(s)	497, 535
PpsI	GAGTC	2 cut(s)	497, 535
PsiI	TTATAA	1 cut(s)	699
Psp6I	CCWGG	4 cut(s)	290, 440, 512, 844
PspEI	GGTNACC	1 cut(s)	648
PspFI	CCCAGC	4 cut(s)	316, 422, 452, 796
PspGI	CCWGG	4 cut(s)	290, 440, 512, 844
PspN4I	GGNNCC	4 cut(s)	305, 321, 518, 833
PspOMI	GGGCCC	1 cut(s)	319
PspPI	GGNCC	4 cut(s)	304, 319, 320, 689
PstI	CTGCAG	1 cut(s)	742
PvuI	CGATCG	1 cut(s)	869
RsaI	GTAC	2 cut(s)	116, 329
RsaNI	GTAC	2 cut(s)	115, 328
RseI	CAYNNNNRTG	1 cut(s)	277
SaqAI	TTAA	2 cut(s)	723, 851
SatI	GCNGC	1 cut(s)	738
Sau3AI	GATC	4 cut(s)	151, 715, 862, 866
Sau96I	GGNCC	4 cut(s)	304, 319, 320, 689
SchI	GAGTC	2 cut(s)	497, 536
ScrFI	CCNGG	4 cut(s)	292, 442, 514, 846
SduI	GDGCHC	1 cut(s)	323
SfaNI	GCATC	1 cut(s)	381
SfcI	CTRYAG	1 cut(s)	738
SinI	GGWCC	2 cut(s)	304, 689
SmiMI	CAYNNNNRTG	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	5 cut(s)	174, 610, 694, 704, 871
SsiI	CCGC	1 cut(s)	109
StyD4I	CCNGG	4 cut(s)	290, 440, 512, 844
StyI	CCWWGG	2 cut(s)	379, 507
TaqI	TCGA	2 cut(s)	865, 869
TasI	AATT	5 cut(s)	174, 610, 694, 704, 871
TatI	WGTACW	2 cut(s)	114, 327
Tru1I	TTAA	2 cut(s)	723, 851
Tru9I	TTAA	2 cut(s)	723, 851
TscAI	CASTG	3 cut(s)	175, 556, 807
TseFI	GTSAC	2 cut(s)	281, 648
TseI	GCWGC	1 cut(s)	737
Tsp45I	GTSAC	2 cut(s)	281, 648
TspDTI	ATGAA	2 cut(s)	267, 741
TspRI	CASTG	3 cut(s)	175, 556, 807
VpaK11BI	GGWCC	2 cut(s)	304, 689
XapI	RAATTY	2 cut(s)	610, 871
XcmI	CCANNNNNNNNNTGG	2 cut(s)	520, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.