Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011918

Physical Location & Seq

Genomic Coordinates Reverse (-)

71145364 .. 71146853

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG412600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGTTAGTCCATTCAAAGACCACCAATCTCACTCTCCATCTTACACTCACTCCTTCATCAAGAAAATCTTACCTTATTTCATCTATGTCGTACTTCCCATTGCTGTAATCCGCCTCTACCTTTACTCCCCCACTCTCCCCCAATCCTCCACAGTTCACTATCACCTCCCTCAACCCTCCACAGTTCATCACCTCCCTCACTCCACCACCCCCATTTCCATAACCACTCCATCTTCTTCTTCCTCTTCACATGAAGAAGAAGAGAAGAAACCAGAAGCTAAAGAAACTCAATGTGACTACACAGATGGAAACTGGGTCCCTGACAAAATGGGTCCTTTGTACAATGGCACAACCTGTGGGACAATTAAGGAAGGCCAGAATTGCATCACCCATGGGAGATCAGATTTGGGTTATCTCTACTGGAAATGGAAACCCAAGCAGTGCCCTTTACCAAGGTTTGAACCCAACACTTTTCTCCACCTCCTTAGAAACAAGCACATAGCTTTTGTCGGTGACTCCATGGCCAGGAACCAATTGGAGTCCCTTCTTTGCATGCTAGCCACTGCCTCTCCTCCCAGACTTGTTTACACTGATGGTGAGGACAACAAGTTTAGGAGGTGGAACTTTGCTTCTCACAATGTCAATGTGTCAGTGTATTGGTCACCCTTTCTTGTTAAAGGTCTTGAGAAATCAAAATCAGGGCCTGATCACAATGAATTGTATTTGGATCAAGTTGATGAGAGGTGGGCAGCTGATATGGGTAAGATGGACATGGTTGTGTTATCAGTTGGGCATTGGTTTTTGCATCCTGCTGTGTATTTTGAGGGTGGTTCAGCTCTTGGGTGTCATTTCTGTCCTGGTCTGAATCACACTGAGATTGGCTTCTATGATGTTCTGAGAAAGGCCGTAAGGACTACCCTAAAGACCATAACCGAAAGGAGAGGGACTAGTGAGAATGGGATCAATGTAATTGTGACTACATTTTCACCAGCTCATTTTGAAGGTGAGTGGGACAAGGCTGGGGCTTGTCCCAAGACCAAGCCTTACAACAAGGGAGAGAAAAATCTTGAAGGAATGGATGCTGAGATGAGGCAAGTTGAGGTGGAAGAAGTGGAAGCTGCTAAGGTGAATGGTAAGAGGTTTTCAGGGTTTAAGGTTGAAGAATTGGATGTGAGCTATTTGTCATTGATGAGGCCAGATGGGCATCCTGGGCCTTATATGAACCCATTTCCATTTTTTAATGGGGTGAAAGAGAGGGTGCAAAATGATTGTGTACATTGGTGTTTGCCTGGGGCTATTGACACATGGAATGAGATATTGCTGGAGATCATGAAGAAATGGAATCGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

450

Amino Acids

51.18

Weight (kDa)

6.72

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	97 - 148	3.1e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	150 - 442	4.1e-92	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011918)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70230
fragaria_vesca	FvH4_4g34920
malus_domestica	MD13G1087900.v1.1 MD16G1088200.v1.1
prunus_persica	Prupe.1G258400_v2.0.a1
pyrus_communis	pycom13g07560 pycom16g07550
rosa_chinensis	RchiOBHm_Chr4g0444361
rosa_laevigata	RLG00000005837
rosa_multiflora	Rmu_sc0002841.1_g000009
rosa_roxburghii	Rroxscaffold_5G00384900
rosa_rugosa	Rorug04G0352100 Rorug04G0352200 Rorug04G0352200
rosa_samantha	Rh4AG412600 Rh4BG424100 Rh4CG438400 Rh4DG419300
rosa_wichuraiana	Rw4G035440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	2 cut(s)	735, 968
AcoI	YGGCCR	1 cut(s)	522
AfaI	GTAC	3 cut(s)	93, 341, 1275
AfiI	CCNNNNNNNGG	1 cut(s)	525
AgsI	TTSAA	5 cut(s)	16, 461, 1001, 1070, 1160
AhlI	ACTAGT	1 cut(s)	947
AjnI	CCWGG	4 cut(s)	524, 856, 1207, 1288
AluBI	AGCT	7 cut(s)	278, 503, 752, 836, 992, 1118, 1176
AluI	AGCT	7 cut(s)	278, 503, 752, 836, 992, 1118, 1176
AlwI	GGATC	2 cut(s)	735, 968
AlwNI	CAGNNNCTG	1 cut(s)	704
AoxI	GGCC	6 cut(s)	373, 522, 701, 903, 1193, 1211
ApeKI	GCWGC	2 cut(s)	749, 1118
AspS9I	GGNCC	4 cut(s)	316, 332, 701, 1211
AsuNHI	GCTAGC	1 cut(s)	556
AvaII	GGWCC	2 cut(s)	316, 332
BaeGI	GKGCMC	1 cut(s)	446
BalI	TGGCCA	1 cut(s)	524
BbvI	GCAGC	2 cut(s)	761, 1105
BccI	CCATC	6 cut(s)	46, 238, 299, 587, 760, 1193
BceAI	ACGGC	1 cut(s)	890
BciT130I	CCWGG	4 cut(s)	526, 858, 1209, 1290
BclI	TGATCA	1 cut(s)	706
BcuI	ACTAGT	1 cut(s)	947
BfaI	CTAG	2 cut(s)	557, 948
BglI	GCCNNNNNGGC	1 cut(s)	1201
BisI	GCNGC	2 cut(s)	750, 1119
BlsI	GCNGC	2 cut(s)	751, 1120
Bme1390I	CCNGG	4 cut(s)	526, 858, 1209, 1290
Bme18I	GGWCC	2 cut(s)	316, 332
BmgT120I	GGNCC	4 cut(s)	316, 332, 701, 1211
BmiI	GGNNCC	4 cut(s)	317, 318, 333, 530
BmrFI	CCNGG	4 cut(s)	526, 858, 1209, 1290
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	4 cut(s)	393, 814, 1069, 1213
BmtI	GCTAGC	1 cut(s)	560
BmuI	ACTGGG	1 cut(s)	322
BpmI	CTGGAG	1 cut(s)	1343
Bpu10I	CCTNAGC	1 cut(s)	1122
BpuEI	CTTGAG	1 cut(s)	704
BsaBI	GATNNNNATC	1 cut(s)	1203
BsaJI	CCNNGG	5 cut(s)	391, 452, 519, 1208, 1289
BsaXI	ACNNNNNCTCC	6 cut(s)	35, 65, 110, 140, 553, 583
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
Bse1I	ACTGG	2 cut(s)	317, 425
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	1203
BseBI	CCWGG	4 cut(s)	526, 858, 1209, 1290
BseDI	CCNNGG	5 cut(s)	391, 452, 519, 1208, 1289
BseGI	GGATG	4 cut(s)	805, 1084, 1174, 1204
BseJI	GATNNNNATC	1 cut(s)	1203
BseLI	CCNNNNNNNGG	1 cut(s)	525
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	3 cut(s)	864, 887, 1074
BseNI	ACTGG	2 cut(s)	317, 425
BseRI	GAGGAG	1 cut(s)	561
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	2 cut(s)	761, 1105
BseYI	CCCAGC	1 cut(s)	1019
BshFI	GGCC	6 cut(s)	375, 524, 703, 905, 1195, 1213
BslFI	GGGAC	6 cut(s)	302, 373, 526, 958, 1014, 1025
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmFI	GGGAC	6 cut(s)	302, 373, 526, 958, 1014, 1025
BsnI	GGCC	6 cut(s)	375, 524, 703, 905, 1195, 1213
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp1407I	TGTACA	2 cut(s)	339, 1273
Bsp143I	GATC	5 cut(s)	398, 706, 727, 960, 1326
Bsp19I	CCATGG	2 cut(s)	391, 519
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	6 cut(s)	375, 524, 703, 905, 1195, 1213
BspCNI	CTCAG	3 cut(s)	865, 888, 1075
BspHI	TCATGA	1 cut(s)	1329
BspLI	GGNNCC	4 cut(s)	317, 318, 333, 530
BspOI	GCTAGC	1 cut(s)	560
BspPI	GGATC	2 cut(s)	735, 968
BsrDI	GCAATG	1 cut(s)	99
BsrGI	TGTACA	2 cut(s)	339, 1273
BsrI	ACTGG	2 cut(s)	317, 425
BssECI	CCNNGG	5 cut(s)	391, 452, 519, 1208, 1289
BssMI	GATC	5 cut(s)	398, 706, 727, 960, 1326
BssT1I	CCWWGG	3 cut(s)	391, 452, 519
Bst2UI	CCWGG	4 cut(s)	526, 858, 1209, 1290
Bst4CI	ACNGT	2 cut(s)	154, 184
Bst6I	CTCTTC	2 cut(s)	250, 255
BstAUI	TGTACA	2 cut(s)	339, 1273
BstC8I	GCNNGC	2 cut(s)	554, 558
BstDEI	CTNAG	5 cut(s)	485, 873, 896, 1083, 1122
BstDSI	CCRYGG	2 cut(s)	391, 519
BstEII	GGTNACC	1 cut(s)	660
BstF5I	GGATG	4 cut(s)	805, 1084, 1174, 1204
BstKTI	GATC	5 cut(s)	401, 709, 730, 963, 1329
BstMBI	GATC	5 cut(s)	398, 706, 727, 960, 1326
BstMWI	GCNNNNNNNGC	3 cut(s)	381, 1201, 1210
BstNI	CCWGG	4 cut(s)	526, 858, 1209, 1290
BstNSI	RCATGY	1 cut(s)	556
BstPI	GGTNACC	1 cut(s)	660
BstSCI	CCNGG	4 cut(s)	524, 856, 1207, 1288
BstSLI	GKGCMC	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	761, 1105
BsuRI	GGCC	6 cut(s)	375, 524, 703, 905, 1195, 1213
BtgI	CCRYGG	2 cut(s)	391, 519
BtsCI	GGATG	4 cut(s)	805, 1084, 1174, 1204
BtsI	GCAGTG	2 cut(s)	446, 561
BtsIMutI	CAGTG	5 cut(s)	446, 561, 588, 657, 870
Cac8I	GCNNGC	2 cut(s)	554, 558
CaiI	CAGNNNCTG	1 cut(s)	704
CciI	TCATGA	1 cut(s)	1329
Cfr13I	GGNCC	4 cut(s)	316, 332, 701, 1211
Csp6I	GTAC	3 cut(s)	92, 340, 1274
CviAII	CATG	7 cut(s)	251, 392, 520, 553, 772, 1305, 1330
CviQI	GTAC	3 cut(s)	92, 340, 1274
DdeI	CTNAG	5 cut(s)	485, 873, 896, 1083, 1122
DpnI	GATC	5 cut(s)	400, 708, 729, 962, 1328
DpnII	GATC	5 cut(s)	398, 706, 727, 960, 1326
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	2 cut(s)	250, 255
EarI	CTCTTC	2 cut(s)	250, 255
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	3 cut(s)	391, 452, 519
Eco47I	GGWCC	2 cut(s)	316, 332
Eco91I	GGTNACC	1 cut(s)	660
EcoO109I	RGGNCCY	3 cut(s)	316, 332, 701
EcoO65I	GGTNACC	1 cut(s)	660
EcoRII	CCWGG	4 cut(s)	524, 856, 1207, 1288
EcoT14I	CCWWGG	3 cut(s)	391, 452, 519
ErhI	CCWWGG	3 cut(s)	391, 452, 519
FaeI	CATG	7 cut(s)	254, 395, 523, 556, 775, 1308, 1333
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	6 cut(s)	302, 373, 526, 958, 1014, 1025
FatI	CATG	7 cut(s)	250, 391, 519, 552, 771, 1304, 1329
FbaI	TGATCA	1 cut(s)	706
Fnu4HI	GCNGC	2 cut(s)	750, 1119
FokI	GGATG	4 cut(s)	792, 1091, 1181, 1191
Fsp4HI	GCNGC	2 cut(s)	750, 1119
FspBI	CTAG	2 cut(s)	557, 948
GluI	GCNGC	2 cut(s)	750, 1119
GsaI	CCCAGC	1 cut(s)	1023
GsuI	CTGGAG	1 cut(s)	1343
HaeIII	GGCC	6 cut(s)	375, 524, 703, 905, 1195, 1213
Hin1II	CATG	7 cut(s)	254, 395, 523, 556, 775, 1308, 1333
HinfI	GANTC	4 cut(s)	515, 539, 865, 1342
Hpy166II	GTNNAC	3 cut(s)	157, 586, 1274
Hpy188I	TCNGA	3 cut(s)	403, 864, 897
Hpy188III	TCNNGA	4 cut(s)	61, 683, 1067, 1330
Hpy8I	GTNNAC	3 cut(s)	157, 586, 1274
HpyAV	CCTTC	5 cut(s)	64, 365, 554, 995, 1064
HpyCH4III	ACNGT	2 cut(s)	154, 184
HpyCH4V	TGCA	4 cut(s)	384, 552, 805, 1261
HpyF10VI	GCNNNNNNNGC	3 cut(s)	381, 1201, 1210
HpyF3I	CTNAG	5 cut(s)	485, 873, 896, 1083, 1122
Hsp92II	CATG	7 cut(s)	254, 395, 523, 556, 775, 1308, 1333
KflI	GGGWCCC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	5 cut(s)	398, 706, 727, 960, 1326
Lsp1109I	GCAGC	2 cut(s)	761, 1105
LweI	GCATC	4 cut(s)	393, 814, 1069, 1213
MaeI	CTAG	2 cut(s)	557, 948
MaeIII	GTNAC	4 cut(s)	293, 512, 660, 973
MalI	GATC	5 cut(s)	400, 708, 729, 962, 1328
MboI	GATC	5 cut(s)	398, 706, 727, 960, 1326
MfeI	CAATTG	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	446
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	6 cut(s)	363, 379, 533, 716, 969, 1163
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	2 cut(s)	509, 548
Mox20I	TGGCCA	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	4 cut(s)	366, 675, 1152, 1239
MslI	CAYNNNNRTG	1 cut(s)	776
Msp20I	TGGCCA	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	752
MspR9I	CCNGG	4 cut(s)	526, 858, 1209, 1290
MunI	CAATTG	1 cut(s)	533
MvaI	CCWGG	4 cut(s)	526, 858, 1209, 1290
MwoI	GCNNNNNNNGC	3 cut(s)	381, 1201, 1210
NcoI	CCATGG	2 cut(s)	391, 519
NdeII	GATC	5 cut(s)	398, 706, 727, 960, 1326
NheI	GCTAGC	1 cut(s)	556
NlaIII	CATG	7 cut(s)	254, 395, 523, 556, 775, 1308, 1333
NlaIV	GGNNCC	4 cut(s)	317, 318, 333, 530
NmuCI	GTSAC	4 cut(s)	293, 512, 660, 973
NspI	RCATGY	1 cut(s)	556
PaeI	GCATGC	1 cut(s)	556
PagI	TCATGA	1 cut(s)	1329
PfeI	GAWTC	2 cut(s)	865, 1342
PkrI	GCNGC	2 cut(s)	751, 1120
PleI	GAGTC	2 cut(s)	509, 547
PpsI	GAGTC	2 cut(s)	509, 547
PpuMI	RGGWCCY	2 cut(s)	316, 332
Psp5II	RGGWCCY	2 cut(s)	316, 332
Psp6I	CCWGG	4 cut(s)	524, 856, 1207, 1288
PspEI	GGTNACC	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	1019
PspGI	CCWGG	4 cut(s)	524, 856, 1207, 1288
PspN4I	GGNNCC	4 cut(s)	317, 318, 333, 530
PspPI	GGNCC	4 cut(s)	316, 332, 701, 1211
PspPPI	RGGWCCY	2 cut(s)	316, 332
PstNI	CAGNNNCTG	1 cut(s)	704
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	3 cut(s)	93, 341, 1275
RsaNI	GTAC	3 cut(s)	92, 340, 1274
RseI	CAYNNNNRTG	1 cut(s)	776
SaqAI	TTAA	4 cut(s)	366, 675, 1152, 1239
SatI	GCNGC	2 cut(s)	750, 1119
Sau3AI	GATC	5 cut(s)	398, 706, 727, 960, 1326
Sau96I	GGNCC	4 cut(s)	316, 332, 701, 1211
SchI	GAGTC	2 cut(s)	509, 548
ScrFI	CCNGG	4 cut(s)	526, 858, 1209, 1290
SduI	GDGCHC	1 cut(s)	446
SfaNI	GCATC	4 cut(s)	393, 814, 1069, 1213
SinI	GGWCC	2 cut(s)	316, 332
SmiMI	CAYNNNNRTG	1 cut(s)	776
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
SpeI	ACTAGT	1 cut(s)	947
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	6 cut(s)	363, 379, 533, 716, 969, 1163
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	2 cut(s)	557, 948
StyD4I	CCNGG	4 cut(s)	524, 856, 1207, 1288
StyI	CCWWGG	3 cut(s)	391, 452, 519
TaaI	ACNGT	2 cut(s)	154, 184
TasI	AATT	6 cut(s)	363, 379, 533, 716, 969, 1163
TatI	WGTACW	2 cut(s)	339, 1273
TfiI	GAWTC	2 cut(s)	865, 1342
Tru1I	TTAA	4 cut(s)	366, 675, 1152, 1239
Tru9I	TTAA	4 cut(s)	366, 675, 1152, 1239
TscAI	CASTG	5 cut(s)	446, 568, 595, 657, 877
TseFI	GTSAC	4 cut(s)	293, 512, 660, 973
TseI	GCWGC	2 cut(s)	749, 1118
Tsp45I	GTSAC	4 cut(s)	293, 512, 660, 973
TspDTI	ATGAA	7 cut(s)	46, 70, 176, 267, 729, 1235, 1346
TspRI	CASTG	5 cut(s)	446, 568, 595, 657, 877
VpaK11BI	GGWCC	2 cut(s)	316, 332
XceI	RCATGY	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XspI	CTAG	2 cut(s)	557, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.